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Searched refs:CInternalExon (Results 1 – 4 of 4) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/
H A Dhmm.hpp389 class CInternalExon : public CExon class
392 ~CInternalExon() {} in ~CInternalExon()
393 …CInternalExon(EStrand strn, int ph, int point, const CSeqScores& seqscr, const CExonParameters& pa…
396 … const CInternalExon* PrevExon() const { return static_cast<const CInternalExon*>(m_prevexon); } in PrevExon()
475 double BranchScore(const CInternalExon& next) const;
495 inline double CIntron::BranchScore(const CInternalExon& next) const in BranchScore()
509 inline double CInternalExon::BranchScore(const CIntron& next) const in BranchScore()
H A Dparse.hpp64 vector<CInternalExon> m_ieplus[2][3], m_ieminus[2][3];
H A Dhmm.cpp239 CInternalExon::CInternalExon(EStrand strn, int ph, int point, const CSeqScores& seqscr, const CExon… in CInternalExon() function in CInternalExon
247 double CInternalExon::LengthScore() const in LengthScore()
266 double CInternalExon::TermScore() const in TermScore()
H A Dparse.cpp289 …_params, EStrand strand, int point, vector<CIntron> lvec[][3], vector<CInternalExon> rvec[][3]) … in s_MakeStep()
295 rvec[kr][phr].push_back(CInternalExon(strand,phr,point,seqscr,exon_params)); in s_MakeStep()