Searched refs:CMagicBlastOptionsHandle (Results 1 – 17 of 17) sorted by relevance
48 CMagicBlastOptionsHandle::CMagicBlastOptionsHandle(EAPILocality locality) in BEGIN_SCOPE()55 CMagicBlastOptionsHandle::CMagicBlastOptionsHandle(CRef<CBlastOptions> opt) in CMagicBlastOptionsHandle() function in CMagicBlastOptionsHandle62 CMagicBlastOptionsHandle::SetDefaults() in SetDefaults()70 CMagicBlastOptionsHandle::SetRNAToGenomeDefaults() in SetRNAToGenomeDefaults()86 CMagicBlastOptionsHandle::SetRNAToRNADefaults() in SetRNAToRNADefaults()110 CMagicBlastOptionsHandle::SetGenomeToGenomeDefaults() in SetGenomeToGenomeDefaults()133 CMagicBlastOptionsHandle::SetLookupTableDefaults() in SetLookupTableDefaults()149 CMagicBlastOptionsHandle::SetQueryOptionDefaults() in SetQueryOptionDefaults()168 CMagicBlastOptionsHandle::SetGappedExtensionDefaults() in SetGappedExtensionDefaults()181 CMagicBlastOptionsHandle::SetScoringOptionsDefaults() in SetScoringOptionsDefaults()[all …]
192 retval = new CMagicBlastOptionsHandle(locality); in Create()461 CMagicBlastOptionsHandle* opts = in CreateTask()462 dynamic_cast<CMagicBlastOptionsHandle*> in CreateTask()
56 CRef<CMagicBlastOptionsHandle> options) in CMagicBlast()
54 class NCBI_XBLAST_EXPORT CMagicBlastOptionsHandle : class60 CMagicBlastOptionsHandle(EAPILocality locality = CBlastOptions::eLocal);63 CMagicBlastOptionsHandle(CRef<CBlastOptions> opt);249 CMagicBlastOptionsHandle(const CMagicBlastOptionsHandle& rhs);251 CMagicBlastOptionsHandle& operator=(const CMagicBlastOptionsHandle& rhs);
71 CRef<CMagicBlastOptionsHandle> options);
51 CRef<CMagicBlastOptionsHandle> options,64 CRef<CMagicBlastOptionsHandle> m_Options;
434 CRef<CMagicBlastOptionsHandle> magic_opts( in Run()435 new CMagicBlastOptionsHandle(options)); in Run()
50 CRef<CMagicBlastOptionsHandle> options, in CMagicBlastThread()
287 return CRef<CBlastOptionsHandle>(new CMagicBlastOptionsHandle(locality)); in x_CreateOptionsHandle()
66 CRef<CMagicBlastOptionsHandle> m_OptHandle;74 m_OptHandle.Reset(new CMagicBlastOptionsHandle); in CMagicBlastTestFixture()