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Searched refs:CMagicBlastOptionsHandle (Results 1 – 17 of 17) sorted by relevance

/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/api/
H A Dmagicblast_options.cpp48 CMagicBlastOptionsHandle::CMagicBlastOptionsHandle(EAPILocality locality) in BEGIN_SCOPE()
55 CMagicBlastOptionsHandle::CMagicBlastOptionsHandle(CRef<CBlastOptions> opt) in CMagicBlastOptionsHandle() function in CMagicBlastOptionsHandle
62 CMagicBlastOptionsHandle::SetDefaults() in SetDefaults()
70 CMagicBlastOptionsHandle::SetRNAToGenomeDefaults() in SetRNAToGenomeDefaults()
86 CMagicBlastOptionsHandle::SetRNAToRNADefaults() in SetRNAToRNADefaults()
110 CMagicBlastOptionsHandle::SetGenomeToGenomeDefaults() in SetGenomeToGenomeDefaults()
133 CMagicBlastOptionsHandle::SetLookupTableDefaults() in SetLookupTableDefaults()
149 CMagicBlastOptionsHandle::SetQueryOptionDefaults() in SetQueryOptionDefaults()
168 CMagicBlastOptionsHandle::SetGappedExtensionDefaults() in SetGappedExtensionDefaults()
181 CMagicBlastOptionsHandle::SetScoringOptionsDefaults() in SetScoringOptionsDefaults()
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H A Dblast_options_handle.cpp192 retval = new CMagicBlastOptionsHandle(locality); in Create()
461 CMagicBlastOptionsHandle* opts = in CreateTask()
462 dynamic_cast<CMagicBlastOptionsHandle*> in CreateTask()
H A Dmagicblast.cpp56 CRef<CMagicBlastOptionsHandle> options) in CMagicBlast()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/api/
H A Dmagicblast_options.cpp48 CMagicBlastOptionsHandle::CMagicBlastOptionsHandle(EAPILocality locality) in BEGIN_SCOPE()
55 CMagicBlastOptionsHandle::CMagicBlastOptionsHandle(CRef<CBlastOptions> opt) in CMagicBlastOptionsHandle() function in CMagicBlastOptionsHandle
62 CMagicBlastOptionsHandle::SetDefaults() in SetDefaults()
70 CMagicBlastOptionsHandle::SetRNAToGenomeDefaults() in SetRNAToGenomeDefaults()
86 CMagicBlastOptionsHandle::SetRNAToRNADefaults() in SetRNAToRNADefaults()
110 CMagicBlastOptionsHandle::SetGenomeToGenomeDefaults() in SetGenomeToGenomeDefaults()
133 CMagicBlastOptionsHandle::SetLookupTableDefaults() in SetLookupTableDefaults()
149 CMagicBlastOptionsHandle::SetQueryOptionDefaults() in SetQueryOptionDefaults()
168 CMagicBlastOptionsHandle::SetGappedExtensionDefaults() in SetGappedExtensionDefaults()
181 CMagicBlastOptionsHandle::SetScoringOptionsDefaults() in SetScoringOptionsDefaults()
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H A Dblast_options_handle.cpp192 retval = new CMagicBlastOptionsHandle(locality); in Create()
461 CMagicBlastOptionsHandle* opts = in CreateTask()
462 dynamic_cast<CMagicBlastOptionsHandle*> in CreateTask()
H A Dmagicblast.cpp56 CRef<CMagicBlastOptionsHandle> options) in CMagicBlast()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/algo/blast/api/
H A Dmagicblast_options.hpp54 class NCBI_XBLAST_EXPORT CMagicBlastOptionsHandle : class
60 CMagicBlastOptionsHandle(EAPILocality locality = CBlastOptions::eLocal);
63 CMagicBlastOptionsHandle(CRef<CBlastOptions> opt);
249 CMagicBlastOptionsHandle(const CMagicBlastOptionsHandle& rhs);
251 CMagicBlastOptionsHandle& operator=(const CMagicBlastOptionsHandle& rhs);
H A Dmagicblast.hpp71 CRef<CMagicBlastOptionsHandle> options);
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/blast/api/
H A Dmagicblast_options.hpp54 class NCBI_XBLAST_EXPORT CMagicBlastOptionsHandle : class
60 CMagicBlastOptionsHandle(EAPILocality locality = CBlastOptions::eLocal);
63 CMagicBlastOptionsHandle(CRef<CBlastOptions> opt);
249 CMagicBlastOptionsHandle(const CMagicBlastOptionsHandle& rhs);
251 CMagicBlastOptionsHandle& operator=(const CMagicBlastOptionsHandle& rhs);
H A Dmagicblast.hpp71 CRef<CMagicBlastOptionsHandle> options);
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/magicblast/
H A Dmagicblast_thread.hpp51 CRef<CMagicBlastOptionsHandle> options,
64 CRef<CMagicBlastOptionsHandle> m_Options;
H A Dmagicblast_app.cpp434 CRef<CMagicBlastOptionsHandle> magic_opts( in Run()
435 new CMagicBlastOptionsHandle(options)); in Run()
H A Dmagicblast_thread.cpp50 CRef<CMagicBlastOptionsHandle> options, in CMagicBlastThread()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/blastinput/
H A Dmagicblast_args.cpp287 return CRef<CBlastOptionsHandle>(new CMagicBlastOptionsHandle(locality)); in x_CreateOptionsHandle()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/blastinput/
H A Dmagicblast_args.cpp287 return CRef<CBlastOptionsHandle>(new CMagicBlastOptionsHandle(locality)); in x_CreateOptionsHandle()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/api/
H A Dmagicblast_unit_test.cpp66 CRef<CMagicBlastOptionsHandle> m_OptHandle;
74 m_OptHandle.Reset(new CMagicBlastOptionsHandle); in CMagicBlastTestFixture()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/api/
H A Dmagicblast_unit_test.cpp66 CRef<CMagicBlastOptionsHandle> m_OptHandle;
74 m_OptHandle.Reset(new CMagicBlastOptionsHandle); in CMagicBlastTestFixture()