| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/read_blast_result/ |
| H A D | match.cpp | 61 CNcbiStrstream input_range_stream; in match_na()
123 CNcbiStrstream buffer; in match_na()
134 CNcbiStrstream misc_feat; in match_na()
143 CNcbiStrstream buffer; in match_na()
154 CNcbiStrstream misc_feat; in match_na()
165 CNcbiStrstream buffer; in match_na()
171 CNcbiStrstream misc_feat; in match_na()
181 CNcbiStrstream buffer; in match_na()
194 CNcbiStrstream misc_feat; in match_na()
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| H A D | overlaps.cpp | 97 CNcbiStrstream ext_rna_range_stream; ext_rna_range_stream << from << "..." << to << '\0'; in find_overlap()
104 CNcbiStrstream ext_rna_range_stream2; ext_rna_range_stream2 << from2 << "..." << to2 << '\0'; in find_overlap()
121 … CNcbiStrstream ext_rna_range_stream2; ext_rna_range_stream2 << from2 << "..." << to2 << '\0'; in find_overlap()
276 CNcbiStrstream buffer(NCBI_STRSTREAM_INIT(bufferchar, 20480)); in overlaps_prot_na()
279 CNcbiStrstream buff_misc_feat_rna; in overlaps_prot_na()
284 CNcbiStrstream buff_misc_feat_protein; in overlaps_prot_na()
290 CNcbiStrstream misc_feat_rna; in overlaps_prot_na()
292 CNcbiStrstream misc_feat_protein; in overlaps_prot_na()
664 CNcbiStrstream buffer(NCBI_STRSTREAM_INIT(bufferchar, 20480)); in overlaps()
674 CNcbiStrstream misc_feat_left; in overlaps()
[all …]
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| H A D | missing.cpp | 134 CNcbiStrstream buffer; in ugly_simple_overlaps_call()
184 CNcbiStrstream seq2_range_stream; in simple_overlaps()
223 CNcbiStrstream misc_feat; in simple_overlaps()
250 CNcbiStrstream misc_feat; in simple_overlaps()
376 void CReadBlastApp::addSimpleTab(CNcbiStrstream& buffer, const string tag, const TSimpleSeqs::itera… in addSimpleTab()
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| H A D | short_proteins.cpp | 70 CNcbiStrstream bufferstr; in short_proteins()
71 CNcbiStrstream misc; in short_proteins()
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| H A D | read_trna.cpp | 90 CNcbiStrstream namestr; in ReadTRNA2()
92 CNcbiStrstream descstr; in ReadTRNA2()
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| H A D | fit_blast.cpp | 175 CNcbiStrstream buffer(NCBI_STRSTREAM_INIT(bufferchar, 20480)); in fit_blast()
177 CNcbiStrstream misc_feat; in fit_blast()
265 CNcbiStrstream buffer(NCBI_STRSTREAM_INIT(bufferchar, 2048)); in fit_blast()
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| H A D | read_rrna.cpp | 90 CNcbiStrstream descstr; in ReadRRNA2()
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| H A D | locations.cpp | 237 CNcbiStrstream label; in GetLocationString()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/blast/blastinput/ |
| H A D | blastn_args.hpp | 76 CNcbiStrstream & GetOutputStrStream() { return m_OutputStream; } in GetOutputStrStream()
86 CNcbiStrstream m_OutputStream;
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| H A D | blastp_args.hpp | 75 CNcbiStrstream & GetOutputStrStream() { return m_OutputStream; } in GetOutputStrStream()
85 CNcbiStrstream m_OutputStream;
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| H A D | blastx_args.hpp | 75 CNcbiStrstream & GetOutputStrStream() { return m_OutputStream; } in GetOutputStrStream()
85 CNcbiStrstream m_OutputStream;
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| H A D | rpstblastn_args.hpp | 82 CNcbiStrstream & GetOutputStrStream() { return m_OutputStream; } in GetOutputStrStream()
92 CNcbiStrstream m_OutputStream;
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| H A D | rpsblast_args.hpp | 89 CNcbiStrstream & GetOutputStrStream() { return m_OutputStream; } in GetOutputStrStream()
99 CNcbiStrstream m_OutputStream;
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| H A D | tblastn_args.hpp | 85 CNcbiStrstream & GetOutputStrStream() { return m_OutputStream; } in GetOutputStrStream()
95 CNcbiStrstream m_OutputStream;
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/corelib/test/ |
| H A D | test_java.cpp | 11 CNcbiStrstream *s_os = NULL;
52 s_os = new CNcbiStrstream; in Java_org_ncbi_toolkit_JniTest_initOutputBuffer()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/structure/cd_utils/ |
| H A D | cuCdReadWriteASN.hpp | 34 ncbi::CNcbiStrstream asnIOstream; in TransformASNObject()
59 ncbi::CNcbiStrstream asnIOstream; in CopyASNObject()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/corelib/ |
| H A D | ncbistre.hpp | 282 using CNcbiStrstream = CNcbistrstream_Base<IO_PREFIX::strstream, IOS_BASE::in | IOS_BASE::out>; typedef
293 typedef IO_PREFIX::stringstream CNcbiStrstream; typedef
350 using CNcbiStrstream = CNcbistrstream_Base<IO_PREFIX::stringstream, IOS_BASE::in | IOS_BASE::out>; typedef
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/corelib/ |
| H A D | ncbistre.hpp | 282 using CNcbiStrstream = CNcbistrstream_Base<IO_PREFIX::strstream, IOS_BASE::in | IOS_BASE::out>; typedef
293 typedef IO_PREFIX::stringstream CNcbiStrstream; typedef
350 using CNcbiStrstream = CNcbistrstream_Base<IO_PREFIX::stringstream, IOS_BASE::in | IOS_BASE::out>; typedef
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/general/unit_test/ |
| H A D | unit_test_field.cpp | 58 CNcbiStrstream str; in ToASNString()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/grid/remote_app/ |
| H A D | remote_cgi_wn.cpp | 229 CNcbiStrstream str_in; in Do()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/asniotest/ |
| H A D | asniotest.cpp | 433 CNcbiStrstream asnIOstream;
563 CNcbiStrstream ss;
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/edit/ |
| H A D | remote_updater.cpp | 246 CNcbiStrstream os; in GetOrgReply()
531 CNcbiStrstream os; in _UpdateOrgFromTaxon()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/blastinput/ |
| H A D | blast_input.cpp | 210 CNcbiStrstream ss; in GetAllSeqs()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/blastinput/ |
| H A D | blast_input.cpp | 210 CNcbiStrstream ss; in GetAllSeqs()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/grid/grid_cli/ |
| H A D | ns_cmds.cpp | 467 CNcbiStrstream remote_app_stdin; in x_LoadJobInput()
493 CNcbiStrstream remote_app_stdin; in SubmitJob_Batch()
539 CNcbiStrstream remote_app_stdin; in SubmitJob_Batch()
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