| /dports/biology/emboss/EMBOSS-6.6.0/test/data/ |
| H A D | 1hmp_a.ccf | 19 CO 1 1 . P 1 1 . . . . . . S SER N 51.993 53.71…
20 CO 1 1 . P 1 1 . . . . . . S SER CA 52.814 53.82…
21 CO 1 1 . P 1 1 . . . . . . S SER C 51.997 54.08…
22 CO 1 1 . P 1 1 . . . . . . S SER O 50.959 53.48…
23 CO 1 1 . P 1 1 . . . . . . S SER CB 53.743 52.61…
24 CO 1 1 . P 1 1 . . . . . . S SER OG 54.029 52.37…
25 CO 1 1 . P 2 2 . . . . . . P PRO N 52.447 55.00…
26 CO 1 1 . P 2 2 . . . . . . P PRO CA 51.763 55.26…
27 CO 1 1 . P 2 2 . . . . . . P PRO C 52.425 54.40…
28 CO 1 1 . P 2 2 . . . . . . P PRO O 52.291 54.59…
[all …]
|
| H A D | 1atn.pxyz | 34 CO 1 1 . P 1 0 . . . . . . X ACE CA 105.046 51.54…
35 CO 1 1 . P 1 0 . . . . . . X ACE C 105.314 50.82…
36 CO 1 1 . P 1 0 . . . . . . X ACE O 105.220 51.45…
37 CO 1 1 . P 2 1 . . . . . . D ASP N 105.665 49.50…
38 CO 1 1 . P 2 1 . . . . . . D ASP CA 105.992 48.58…
39 CO 1 1 . P 2 1 . . . . . . D ASP C 107.024 49.19…
40 CO 1 1 . P 2 1 . . . . . . D ASP O 106.927 49.08…
41 CO 1 1 . P 2 1 . . . . . . D ASP CB 106.533 47.24…
42 CO 1 1 . P 2 1 . . . . . . D ASP CG 106.801 46.07…
43 CO 1 1 . P 2 1 . . . . . . D ASP OD1 107.722 46.14…
[all …]
|
| /dports/graphics/py-freeimagepy/FreeImagePy-2.0.1/FreeImagePy/ |
| H A D | funct_list.py | 60 ('FreeImage_SetTransparent', '@8', (CO.COL_8, CO.COL_32) ),
62 ('FreeImage_HasBackgroundColor', '@4', (CO.COL_8, CO.COL_24, CO.COL_32) ),
63 ('FreeImage_GetBackgroundColor', '@8', (CO.COL_8, CO.COL_24, CO.COL_32),
65 ('FreeImage_SetBackgroundColor', '@8', (CO.COL_8, CO.COL_24, CO.COL_32) ),
129 ('FreeImage_RotateEx', '@48', (CO.COL_8, CO.COL_24, CO.COL_32), ),
133 ('FreeImage_AdjustBrightness', '@12', (CO.COL_8, CO.COL_24, CO.COL_32), CO.BOOL),
134 ('FreeImage_AdjustCurve', '@12', (CO.COL_8, CO.COL_24, CO.COL_32), CO.BOOL),
135 ('FreeImage_AdjustGamma', '@12', (CO.COL_8, CO.COL_24, CO.COL_32), CO.BOOL),
136 ('FreeImage_AdjustContrast', '@12', (CO.COL_8, CO.COL_24, CO.COL_32), CO.BOOL),
137 ('FreeImage_GetHistogram', '@12', (CO.COL_8, CO.COL_24, CO.COL_32), CO.BOOL),
[all …]
|
| /dports/biology/emboss/EMBOSS-6.6.0/test/data/structure/sites/ |
| H A D | 1cs4.ccf | 59 CO 1 1 . P 22 377 . . . . . . M MET N 28.568 -27.77…
60 CO 1 1 . P 22 377 . . . . . . M MET CA 28.292 -26.44…
61 CO 1 1 . P 22 377 . . . . . . M MET C 29.325 -25.37…
62 CO 1 1 . P 22 377 . . . . . . M MET O 30.485 -25.68…
63 CO 1 1 . P 22 377 . . . . . . M MET CB 28.075 -26.50…
64 CO 1 1 . P 22 377 . . . . . . M MET CG 29.171 -27.20…
65 CO 1 1 . P 22 377 . . . . . . M MET SD 28.708 -27.44…
66 CO 1 1 . P 22 377 . . . . . . M MET CE 28.745 -25.74…
67 CO 1 1 . P 23 378 . . . . . . M MET N 28.883 -24.12…
68 CO 1 1 . P 23 378 . . . . . . M MET CA 29.698 -22.96…
[all …]
|
| H A D | 1ii7.ccf | 35 CO 1 1 . P 1 1 . . . . . . M MET N -2.310 49.56…
36 CO 1 1 . P 1 1 . . . . . . M MET CA -2.152 48.88…
37 CO 1 1 . P 1 1 . . . . . . M MET C -1.530 47.51…
38 CO 1 1 . P 1 1 . . . . . . M MET O -2.222 46.56…
39 CO 1 1 . P 1 1 . . . . . . M MET CB -3.511 48.75…
40 CO 1 1 . P 1 1 . . . . . . M MET CG -3.502 47.89…
41 CO 1 1 . P 1 1 . . . . . . M MET SD -1.833 47.64…
42 CO 1 1 . P 1 1 . . . . . . M MET CE -1.470 49.39…
43 CO 1 1 . P 2 2 E 4 A . . . K LYS N -0.217 47.45…
44 CO 1 1 . P 2 2 E 4 A . . . K LYS CA 0.631 46.29…
[all …]
|
| /dports/biology/emboss/EMBOSS-6.6.0/test/data/structure/ |
| H A D | d1cs4a_.ccf | 19 CO 1 1 . P 22 377 . . . . . . M MET N 28.568 -27.77…
20 CO 1 1 . P 22 377 . . . . . . M MET CA 28.292 -26.44…
21 CO 1 1 . P 22 377 . . . . . . M MET C 29.325 -25.37…
22 CO 1 1 . P 22 377 . . . . . . M MET O 30.485 -25.68…
23 CO 1 1 . P 22 377 . . . . . . M MET CB 28.075 -26.50…
24 CO 1 1 . P 22 377 . . . . . . M MET CG 29.171 -27.20…
25 CO 1 1 . P 22 377 . . . . . . M MET SD 28.708 -27.44…
26 CO 1 1 . P 22 377 . . . . . . M MET CE 28.745 -25.74…
27 CO 1 1 . P 23 378 . . . . . . M MET N 28.883 -24.12…
28 CO 1 1 . P 23 378 . . . . . . M MET CA 29.698 -22.96…
[all …]
|
| H A D | 1cs4.ccf | 16 CO 1 1 . P 2 396 . . . . . . D ASP N 51.711 -11.78…
17 CO 1 1 . P 2 396 . . . . . . D ASP CA 52.810 -11.64…
18 CO 1 1 . P 2 396 . . . . . . D ASP C 54.137 -11.31…
19 CO 1 1 . P 2 396 . . . . . . D ASP O 54.175 -10.52…
20 CO 1 1 . P 2 396 . . . . . . D ASP CB 52.437 -10.55…
21 CO 1 1 . P 2 396 . . . . . . D ASP CG 53.460 -10.39…
22 CO 1 1 . P 2 396 . . . . . . D ASP OD1 54.316 -9.48…
23 CO 1 1 . P 2 396 . . . . . . D ASP OD2 53.390 -11.14…
24 CO 1 1 . P 3 397 . . . . . . I ILE N 55.216 -11.94…
25 CO 1 1 . P 3 397 . . . . . . I ILE CA 56.546 -11.70…
[all …]
|
| H A D | 1ii7.ccf | 17 CO 1 1 . P 8 8 . . . . . . D ASP N 7.977 32.25…
18 CO 1 1 . P 8 8 . . . . . . D ASP CA 8.882 31.14…
19 CO 1 1 . P 8 8 . . . . . . D ASP C 10.273 31.30…
20 CO 1 1 . P 8 8 . . . . . . D ASP O 10.740 30.45…
21 CO 1 1 . P 8 8 . . . . . . D ASP CB 8.186 29.88…
22 CO 1 1 . P 8 8 . . . . . . D ASP CG 6.918 29.58…
23 CO 1 1 . P 8 8 . . . . . . D ASP OD1 7.041 29.17…
24 CO 1 1 . P 8 8 . . . . . . D ASP OD2 5.801 29.77…
25 CO 1 1 . P 9 9 . . . . . . I ILE N 10.913 32.42…
26 CO 1 1 . P 9 9 . . . . . . I ILE CA 12.236 32.73…
[all …]
|
| H A D | d1ii7a_.ccf | 17 CO 1 1 . P 8 8 . . . . . . D ASP N 7.977 32.25…
18 CO 1 1 . P 8 8 . . . . . . D ASP CA 8.882 31.14…
19 CO 1 1 . P 8 8 . . . . . . D ASP C 10.273 31.30…
20 CO 1 1 . P 8 8 . . . . . . D ASP O 10.740 30.45…
21 CO 1 1 . P 8 8 . . . . . . D ASP CB 8.186 29.88…
22 CO 1 1 . P 8 8 . . . . . . D ASP CG 6.918 29.58…
23 CO 1 1 . P 8 8 . . . . . . D ASP OD1 7.041 29.17…
24 CO 1 1 . P 8 8 . . . . . . D ASP OD2 5.801 29.77…
25 CO 1 1 . P 9 9 . . . . . . I ILE N 10.913 32.42…
26 CO 1 1 . P 9 9 . . . . . . I ILE CA 12.236 32.73…
[all …]
|
| /dports/biology/emboss/EMBOSS-6.6.0/test/data/structure/pdbplus/ |
| H A D | 1cs4.ccf | 16 CO 1 1 . P 2 396 . . . . . . D ASP N 51.711 -11.78…
17 CO 1 1 . P 2 396 . . . . . . D ASP CA 52.810 -11.64…
18 CO 1 1 . P 2 396 . . . . . . D ASP C 54.137 -11.31…
19 CO 1 1 . P 2 396 . . . . . . D ASP O 54.175 -10.52…
20 CO 1 1 . P 2 396 . . . . . . D ASP CB 52.437 -10.55…
21 CO 1 1 . P 2 396 . . . . . . D ASP CG 53.460 -10.39…
22 CO 1 1 . P 2 396 . . . . . . D ASP OD1 54.316 -9.48…
23 CO 1 1 . P 2 396 . . . . . . D ASP OD2 53.390 -11.14…
24 CO 1 1 . P 3 397 . . . . . . I ILE N 55.216 -11.94…
25 CO 1 1 . P 3 397 . . . . . . I ILE CA 56.546 -11.70…
[all …]
|
| H A D | 1ii7.ccf | 17 CO 1 1 . P 8 8 . . . . . . D ASP N 7.977 32.25…
18 CO 1 1 . P 8 8 . . . . . . D ASP CA 8.882 31.14…
19 CO 1 1 . P 8 8 . . . . . . D ASP C 10.273 31.30…
20 CO 1 1 . P 8 8 . . . . . . D ASP O 10.740 30.45…
21 CO 1 1 . P 8 8 . . . . . . D ASP CB 8.186 29.88…
22 CO 1 1 . P 8 8 . . . . . . D ASP CG 6.918 29.58…
23 CO 1 1 . P 8 8 . . . . . . D ASP OD1 7.041 29.17…
24 CO 1 1 . P 8 8 . . . . . . D ASP OD2 5.801 29.77…
25 CO 1 1 . P 9 9 . . . . . . I ILE N 10.913 32.42…
26 CO 1 1 . P 9 9 . . . . . . I ILE CA 12.236 32.73…
[all …]
|
| /dports/biology/emboss/EMBOSS-6.6.0/test/data/structure/interface/ |
| H A D | 2hhb.ccf | 45 CO 1 1 . P 1 1 . . . . . . V VAL N 6.130 16.55…
46 CO 1 1 . P 1 1 . . . . . . V VAL CA 6.870 17.78…
47 CO 1 1 . P 1 1 . . . . . . V VAL C 8.377 17.54…
48 CO 1 1 . P 1 1 . . . . . . V VAL O 8.820 16.98…
49 CO 1 1 . P 1 1 . . . . . . V VAL CB 6.345 18.76…
50 CO 1 1 . P 1 1 . . . . . . V VAL CG1 6.745 20.18…
51 CO 1 1 . P 1 1 . . . . . . V VAL CG2 4.826 18.61…
52 CO 1 1 . P 2 2 . . . . . . L LEU N 9.146 18.00…
53 CO 1 1 . P 2 2 . . . . . . L LEU CA 10.599 17.91…
54 CO 1 1 . P 2 2 . . . . . . L LEU C 11.062 19.08…
[all …]
|
| /dports/biology/emboss/EMBOSS-6.6.0/test/data/structure/domainer/ |
| H A D | d1cs4a_.ccf | 16 CO 1 1 . P 2 396 . . . . . . D ASP N 51.711 -11.78…
17 CO 1 1 . P 2 396 . . . . . . D ASP CA 52.810 -11.64…
18 CO 1 1 . P 2 396 . . . . . . D ASP C 54.137 -11.31…
19 CO 1 1 . P 2 396 . . . . . . D ASP O 54.175 -10.52…
20 CO 1 1 . P 2 396 . . . . . . D ASP CB 52.437 -10.55…
21 CO 1 1 . P 2 396 . . . . . . D ASP CG 53.460 -10.39…
22 CO 1 1 . P 2 396 . . . . . . D ASP OD1 54.316 -9.48…
23 CO 1 1 . P 2 396 . . . . . . D ASP OD2 53.390 -11.14…
24 CO 1 1 . P 3 397 . . . . . . I ILE N 55.216 -11.94…
25 CO 1 1 . P 3 397 . . . . . . I ILE CA 56.546 -11.70…
[all …]
|
| H A D | d1ii7a_.ccf | 17 CO 1 1 . P 8 8 . . . . . . D ASP N 7.977 32.25…
18 CO 1 1 . P 8 8 . . . . . . D ASP CA 8.882 31.14…
19 CO 1 1 . P 8 8 . . . . . . D ASP C 10.273 31.30…
20 CO 1 1 . P 8 8 . . . . . . D ASP O 10.740 30.45…
21 CO 1 1 . P 8 8 . . . . . . D ASP CB 8.186 29.88…
22 CO 1 1 . P 8 8 . . . . . . D ASP CG 6.918 29.58…
23 CO 1 1 . P 8 8 . . . . . . D ASP OD1 7.041 29.17…
24 CO 1 1 . P 8 8 . . . . . . D ASP OD2 5.801 29.77…
25 CO 1 1 . P 9 9 . . . . . . I ILE N 10.913 32.42…
26 CO 1 1 . P 9 9 . . . . . . I ILE CA 12.236 32.73…
[all …]
|
| /dports/biology/py-biopython/biopython-1.79/Tests/EMBL/ |
| H A D | Human_contigs.embl | 134 CO join(complement(AL512310.3:2094..185605),
156 CO AL132718.5:19161..128000,AL110292.4:9..177427,
197 CO AL359950.4:24001..194191,AL391694.4:2..7823,
224 CO AL358341.3:56489..136105,AL512342.2:45..838,
294 CO AL928766.1:2..22955,AL589183.2:600..17576,
298 CO AL133241.3:2000..157347,AL117667.4:2..90331,
331 CO AC007956.5:2..232647,AC006530.4:84..117603,
373 CO AL133279.7:243..196743,AL049834.3:2..171405,
384 CO AL135818.3:706..88440,AL133153.3:7..231490,
391 CO AL132838.4:4285..58790,AL122023.3:2..170429,
[all …]
|
| /dports/biology/emboss/EMBOSS-6.6.0/doc/programs/master/emboss/apps/inc/ |
| H A D | psiphi.input | 25 CO 1 1 . P 1 1 . . . . . . S SER N 51.993 53.71…
26 CO 1 1 . P 1 1 . . . . . . S SER CA 52.814 53.82…
27 CO 1 1 . P 1 1 . . . . . . S SER C 51.997 54.08…
28 CO 1 1 . P 1 1 . . . . . . S SER O 50.959 53.48…
29 CO 1 1 . P 1 1 . . . . . . S SER CB 53.743 52.61…
30 CO 1 1 . P 1 1 . . . . . . S SER OG 54.029 52.37…
31 CO 1 1 . P 2 2 . . . . . . P PRO N 52.447 55.00…
32 CO 1 1 . P 2 2 . . . . . . P PRO CA 51.763 55.26…
33 CO 1 1 . P 2 2 . . . . . . P PRO C 52.425 54.40…
34 CO 1 1 . P 2 2 . . . . . . P PRO O 52.291 54.59…
[all …]
|
| /dports/biology/p5-BioPerl/BioPerl-1.7.7/t/data/ |
| H A D | bug2982.embl | 134 CO join(complement(AL512310.3:2094..185605),
156 CO AL132718.5:19161..128000,AL110292.4:9..177427,
197 CO AL359950.4:24001..194191,AL391694.4:2..7823,
224 CO AL358341.3:56489..136105,AL512342.2:45..838,
294 CO AL928766.1:2..22955,AL589183.2:600..17576,
298 CO AL133241.3:2000..157347,AL117667.4:2..90331,
331 CO AC007956.5:2..232647,AC006530.4:84..117603,
373 CO AL133279.7:243..196743,AL049834.3:2..171405,
384 CO AL135818.3:706..88440,AL133153.3:7..231490,
391 CO AL132838.4:4285..58790,AL122023.3:2..170429,
[all …]
|
| /dports/biology/samtools/samtools-1.14/test/dat/ |
| H A D | depad.001p.sam | 3 @CO The MIT License
4 @CO
5 @CO Copyright (c) 2014 Genome Research Ltd.
6 @CO
13 @CO
16 @CO
23 @CO THE SOFTWARE.
24 @CO
25 @CO 1 2 3
30 @CO Insert ACGTA
[all …]
|
| H A D | depad.001u.sam | 3 @CO The MIT License
4 @CO
5 @CO Copyright (c) 2014 Genome Research Ltd.
6 @CO
13 @CO
16 @CO
23 @CO THE SOFTWARE.
24 @CO
25 @CO 1 2 3
30 @CO Insert ACGTA
[all …]
|
| /dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/test/mpileup/ |
| H A D | mp_N.sam | 3 @CO
5 @CO
13 @CO
16 @CO
24 @CO
29 @CO
30 @CO 1
32 @CO ref TAGCTTAGCAGGT
33 @CO s1 AGCTTAGCAGG 11M
36 @CO qual 01234567890
[all …]
|
| H A D | mp_I.sam | 3 @CO
5 @CO
13 @CO
16 @CO
24 @CO
25 @CO Various I combinations
29 @CO
30 @CO 1
33 @CO
37 @CO AB0123ABC4567890CD
[all …]
|
| /dports/biology/htslib/htslib-1.14/test/mpileup/ |
| H A D | mp_N.sam | 3 @CO
5 @CO
13 @CO
16 @CO
24 @CO
29 @CO
30 @CO 1
32 @CO ref TAGCTTAGCAGGT
33 @CO s1 AGCTTAGCAGG 11M
36 @CO qual 01234567890
[all …]
|
| H A D | mp_I.sam | 3 @CO
5 @CO
13 @CO
16 @CO
24 @CO
25 @CO Various I combinations
29 @CO
30 @CO 1
33 @CO
37 @CO AB0123ABC4567890CD
[all …]
|
| /dports/devel/gdb761/gdb-7.6.1/sim/testsuite/sim/bfin/ |
| H A D | c_dsp32alu_rrppmm_sft_x.s | 19 R0 = R0 +|+ R0, R7 = R0 -|- R0 (CO , ASR);
20 R1 = R0 +|+ R1, R6 = R0 -|- R1 (CO , ASL);
21 R2 = R0 +|+ R2, R5 = R0 -|- R2 (CO , ASR);
22 R3 = R0 +|+ R3, R4 = R0 -|- R3 (CO , ASR);
23 R4 = R0 +|+ R4, R3 = R0 -|- R4 (CO , ASL);
24 R5 = R0 +|+ R5, R2 = R0 -|- R5 (CO , ASR);
25 R6 = R0 +|+ R6, R1 = R0 -|- R6 (CO , ASL);
26 R7 = R0 +|+ R7, R0 = R0 -|- R7 (CO , ASR);
44 R0 = R1 +|+ R0, R7 = R1 -|- R0 (CO , ASR);
45 R1 = R1 +|+ R1, R6 = R1 -|- R1 (CO , ASR);
[all …]
|
| H A D | c_dsp32alu_rrpmmp_sft_x.s | 19 R0 = R0 +|- R0 , R7 = R0 -|+ R0 (CO , ASR);
20 R1 = R0 +|- R1 , R6 = R0 -|+ R1 (CO , ASR);
21 R2 = R0 +|- R2 , R5 = R0 -|+ R2 (CO , ASR);
22 R3 = R0 +|- R3 , R4 = R0 -|+ R3 (CO , ASR);
23 R4 = R0 +|- R4 , R3 = R0 -|+ R4 (CO , ASR);
24 R5 = R0 +|- R5 , R2 = R0 -|+ R5 (CO , ASR);
25 R6 = R0 +|- R6 , R1 = R0 -|+ R6 (CO , ASR);
26 R7 = R0 +|- R7 , R0 = R0 -|+ R7 (CO , ASR);
44 R0 = R1 +|- R0 , R7 = R1 -|+ R0 (CO , ASR);
45 R1 = R1 +|- R1 , R6 = R1 -|+ R1 (CO , ASR);
[all …]
|