Searched refs:COLLECT_QUALITY_STATS (Results 1 – 9 of 9) sorted by relevance
804 ReadStats.COLLECT_QUALITY_STATS=!qhistsNull(); in parseHist()805 …if(ReadStats.COLLECT_QUALITY_STATS){System.err.println("Set quality histogram output to "+ReadStat… in parseHist()808 ReadStats.COLLECT_QUALITY_STATS=!qhistsNull(); in parseHist()812 ReadStats.COLLECT_QUALITY_STATS=!qhistsNull(); in parseHist()816 ReadStats.COLLECT_QUALITY_STATS=!qhistsNull(); in parseHist()817 …if(ReadStats.COLLECT_QUALITY_STATS){System.err.println("Set average quality histogram output to "+… in parseHist()820 …ReadStats.COLLECT_QUALITY_STATS=(ReadStats.BQUAL_HIST_FILE!=null || ReadStats.QUAL_HIST_FILE!=null… in parseHist()821 …if(ReadStats.COLLECT_QUALITY_STATS){System.err.println("Set quality histogram output to "+ReadStat… in parseHist()
35 if(COLLECT_QUALITY_STATS){ in ReadStats()168 if(COLLECT_QUALITY_STATS){ in mergeAll()1612 COLLECT_QUALITY_STATS=false; in clear()1644 public static boolean COLLECT_QUALITY_STATS=false; field in ReadStats1658 …return COLLECT_QUALITY_STATS || COLLECT_QUALITY_ACCURACY || COLLECT_MATCH_STATS || COLLECT_INSERT_… in collectingStats()
211 ReadStats.COLLECT_QUALITY_STATS=(bqhist!=null); in process()212 if(ReadStats.COLLECT_QUALITY_STATS){ in process()
52 ReadStats.COLLECT_QUALITY_STATS=true; in main()64 final boolean oldCOLLECT_QUALITY_STATS=ReadStats.COLLECT_QUALITY_STATS; in main2()77 ReadStats.COLLECT_QUALITY_STATS=oldCOLLECT_QUALITY_STATS; in main2()
538 final boolean MAKE_QHIST=ReadStats.COLLECT_QUALITY_STATS; in process()
478 MAKE_QUALITY_HISTOGRAM=ReadStats.COLLECT_QUALITY_STATS; in Seal()
580 MAKE_QUALITY_HISTOGRAM=ReadStats.COLLECT_QUALITY_STATS; in BBDuk2()
702 MAKE_QUALITY_HISTOGRAM=ReadStats.COLLECT_QUALITY_STATS; in BBDuk()
409 final boolean MAKE_QUALITY_HISTOGRAM=(readstats==null ? false : ReadStats.COLLECT_QUALITY_STATS); in run()