Searched refs:COL_READ (Results 1 – 11 of 11) sorted by relevance
| /dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/test/vdb/ |
| H A D | test-VDB-3418.cpp | 118 #define COL_READ "(INSDC:dna:text)READ" macro
143 COL_READ, /* 8 */ in TEST_CASE()
150 auto const readCol = curs.columnNumber(COL_READ); in TEST_CASE()
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| /dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/test/vdb/ |
| H A D | test-VDB-3418.cpp | 118 #define COL_READ "(INSDC:dna:text)READ" macro
143 COL_READ, /* 8 */ in TEST_CASE()
150 auto const readCol = curs.columnNumber(COL_READ); in TEST_CASE()
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| /dports/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/ |
| H A D | sam-aligned.h | 40 #define COL_READ "(INSDC:dna:text)READ" macro
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| H A D | sam-unaligned.c | 33 #define COL_READ "(INSDC:dna:text)READ" macro
150 rc = add_column( stx->cursor, COL_READ, &stx->read_idx ); in prepare_seq_table_ctx()
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| H A D | sam-aligned.c | 320 rc = add_column( cursor, COL_READ, &cmn->read_idx ); /* read_fkt.c */ in prepare_cmn_table_rows()
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| /dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/ |
| H A D | al_iterator.c | 47 #define COL_READ "READ" macro
163 rc = get_idx_and_read( curs, COL_READ, placement->id, &base, &data_len ); in AlignIteratorRecordPopulate()
229 rc = get_idx_and_read( curs, COL_READ, row_id, NULL, &read_len ); in AlignIteratorRecordSize()
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| H A D | ref_iterator.c | 47 #define COL_READ "(INSDC:4na:bin)READ" macro
391 { COL_REF_OFFSET, COL_HAS_REF_OFFSET, COL_HAS_MISMATCH, COL_READ };
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| /dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/align/ |
| H A D | al_iterator.c | 47 #define COL_READ "READ" macro
163 rc = get_idx_and_read( curs, COL_READ, placement->id, &base, &data_len ); in AlignIteratorRecordPopulate()
229 rc = get_idx_and_read( curs, COL_READ, row_id, NULL, &read_len ); in AlignIteratorRecordSize()
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| H A D | ref_iterator.c | 47 #define COL_READ "(INSDC:4na:bin)READ" macro
391 { COL_REF_OFFSET, COL_HAS_REF_OFFSET, COL_HAS_MISMATCH, COL_READ };
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| /dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/ |
| H A D | spot-filter.c | 353 COL_READ, in make_spot_filter() enumerator
361 BIND_COLUMN(COL_READ , uint8_t, read ); ///< 4NA or x2na or 2na in make_spot_filter()
375 assert(SAME_COUNT(COL_READ, COL_QUALITY)); in make_spot_filter()
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| /dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/sraxf/ |
| H A D | spot-filter.c | 353 COL_READ, in make_spot_filter() enumerator
361 BIND_COLUMN(COL_READ , uint8_t, read ); ///< 4NA or x2na or 2na in make_spot_filter()
375 assert(SAME_COUNT(COL_READ, COL_QUALITY)); in make_spot_filter()
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