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Searched refs:COL_READ_START (Results 1 – 7 of 7) sorted by relevance

/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/
H A Dcolor-from-dna.c80 COL_READ_START, in color_from_dna_drvr() enumerator
91 uint64_t out_len, nreads = argv [ COL_READ_START ] . u . data . elem_count; in color_from_dna_drvr()
94 const uint32_t *read_start = argv [ COL_READ_START ] . u . data . base; in color_from_dna_drvr()
100 assert(argv[COL_READ_START].u.data.elem_bits == 32); in color_from_dna_drvr()
109 read_start += argv [ COL_READ_START ] . u . data . first_elem; in color_from_dna_drvr()
H A Dspot-filter.c355 COL_READ_START, in make_spot_filter() enumerator
363 BIND_COLUMN(COL_READ_START , int32_t, start ); in make_spot_filter()
376 assert(SAME_COUNT(COL_READ_START, COL_READ_LEN)); in make_spot_filter()
377 assert(SAME_COUNT(COL_READ_START, COL_READ_TYPE)); in make_spot_filter()
/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/sraxf/
H A Dcolor-from-dna.c80 COL_READ_START, in color_from_dna_drvr() enumerator
91 uint64_t out_len, nreads = argv [ COL_READ_START ] . u . data . elem_count; in color_from_dna_drvr()
94 const uint32_t *read_start = argv [ COL_READ_START ] . u . data . base; in color_from_dna_drvr()
100 assert(argv[COL_READ_START].u.data.elem_bits == 32); in color_from_dna_drvr()
109 read_start += argv [ COL_READ_START ] . u . data . first_elem; in color_from_dna_drvr()
H A Dspot-filter.c355 COL_READ_START, in make_spot_filter() enumerator
363 BIND_COLUMN(COL_READ_START , int32_t, start ); in make_spot_filter()
376 assert(SAME_COUNT(COL_READ_START, COL_READ_LEN)); in make_spot_filter()
377 assert(SAME_COUNT(COL_READ_START, COL_READ_TYPE)); in make_spot_filter()
/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/test/vdb/
H A Dtest-VDB-3418.cpp125 #define COL_READ_START "(INSDC:coord:zero)READ_START" macro
142 COL_READ_START, /* 7 */ in TEST_CASE()
/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/test/vdb/
H A Dtest-VDB-3418.cpp125 #define COL_READ_START "(INSDC:coord:zero)READ_START" macro
142 COL_READ_START, /* 7 */ in TEST_CASE()
/dports/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/
H A Dsam-unaligned.c88 #define COL_READ_START "(INSDC:coord:zero)READ_START" macro
148 rc = add_column( stx->cursor, COL_READ_START, &stx->read_start_idx ); in prepare_seq_table_ctx()