Home
last modified time | relevance | path

Searched refs:CRAM_BF (Results 1 – 16 of 16) sorted by relevance

/dports/biology/vt/vt-0.57721/lib/htslib/cram/
H A Dcram_structs.h766 CRAM_BF = 0x00000001, enumerator
805 CRAM_SC | CRAM_HC | CRAM_PD | CRAM_RS | CRAM_RL | CRAM_BF)
H A Dcram_decode.c702 s->data_series |= CRAM_BF; in cram_dependent_data_series()
705 s->data_series |= CRAM_RI | CRAM_BF; in cram_dependent_data_series()
708 s->data_series |= CRAM_AP | CRAM_BF; in cram_dependent_data_series()
717 s->data_series |= CRAM_CF | CRAM_NF | CRAM_RI | CRAM_NS |CRAM_BF; in cram_dependent_data_series()
720 s->data_series |= CRAM_CF | CRAM_NF | CRAM_AP | CRAM_NP | CRAM_BF; in cram_dependent_data_series()
724 CRAM_BF | CRAM_MF | CRAM_RI | CRAM_CIGAR; in cram_dependent_data_series()
740 s->data_series |= CRAM_RG | CRAM_BF; in cram_dependent_data_series()
788 if (s->data_series & CRAM_MQ) s->data_series |= CRAM_BF; in cram_dependent_data_series()
795 s->data_series |= CRAM_BF | CRAM_CF | CRAM_RL; in cram_dependent_data_series()
2397 if (ds & CRAM_BF) { in cram_decode_slice()
/dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/cram/
H A Dcram_structs.h779 CRAM_BF = 0x00000001, enumerator
818 CRAM_SC | CRAM_HC | CRAM_PD | CRAM_RS | CRAM_RL | CRAM_BF)
H A Dcram_decode.c585 s->data_series |= CRAM_BF; in cram_dependent_data_series()
588 s->data_series |= CRAM_RI | CRAM_BF; in cram_dependent_data_series()
591 s->data_series |= CRAM_AP | CRAM_BF; in cram_dependent_data_series()
600 s->data_series |= CRAM_CF | CRAM_NF | CRAM_RI | CRAM_NS |CRAM_BF; in cram_dependent_data_series()
603 s->data_series |= CRAM_CF | CRAM_NF | CRAM_AP | CRAM_NP | CRAM_BF; in cram_dependent_data_series()
607 CRAM_BF | CRAM_MF | CRAM_RI | CRAM_CIGAR; in cram_dependent_data_series()
623 s->data_series |= CRAM_RG | CRAM_BF; in cram_dependent_data_series()
671 if (s->data_series & CRAM_MQ) s->data_series |= CRAM_BF; in cram_dependent_data_series()
678 s->data_series |= CRAM_BF | CRAM_CF | CRAM_RL; in cram_dependent_data_series()
2344 if (ds & CRAM_BF) { in cram_decode_slice()
/dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/cram/
H A Dcram_structs.h766 CRAM_BF = 0x00000001, enumerator
805 CRAM_SC | CRAM_HC | CRAM_PD | CRAM_RS | CRAM_RL | CRAM_BF)
H A Dcram_decode.c702 s->data_series |= CRAM_BF; in cram_dependent_data_series()
705 s->data_series |= CRAM_RI | CRAM_BF; in cram_dependent_data_series()
708 s->data_series |= CRAM_AP | CRAM_BF; in cram_dependent_data_series()
717 s->data_series |= CRAM_CF | CRAM_NF | CRAM_RI | CRAM_NS |CRAM_BF; in cram_dependent_data_series()
720 s->data_series |= CRAM_CF | CRAM_NF | CRAM_AP | CRAM_NP | CRAM_BF; in cram_dependent_data_series()
724 CRAM_BF | CRAM_MF | CRAM_RI | CRAM_CIGAR; in cram_dependent_data_series()
740 s->data_series |= CRAM_RG | CRAM_BF; in cram_dependent_data_series()
788 if (s->data_series & CRAM_MQ) s->data_series |= CRAM_BF; in cram_dependent_data_series()
795 s->data_series |= CRAM_BF | CRAM_CF | CRAM_RL; in cram_dependent_data_series()
2397 if (ds & CRAM_BF) { in cram_decode_slice()
/dports/biology/stacks/stacks-2.4/htslib/cram/
H A Dcram_structs.h756 CRAM_BF = 0x00000001, enumerator
795 CRAM_SC | CRAM_HC | CRAM_PD | CRAM_RS | CRAM_RL | CRAM_BF)
H A Dcram_decode.c702 hdr->data_series |= CRAM_BF; in cram_dependent_data_series()
705 hdr->data_series |= CRAM_RI | CRAM_BF; in cram_dependent_data_series()
708 hdr->data_series |= CRAM_AP | CRAM_BF; in cram_dependent_data_series()
717 hdr->data_series |= CRAM_CF | CRAM_NF | CRAM_RI | CRAM_NS |CRAM_BF; in cram_dependent_data_series()
720 hdr->data_series |= CRAM_CF | CRAM_NF | CRAM_AP | CRAM_NP | CRAM_BF; in cram_dependent_data_series()
724 CRAM_BF | CRAM_MF | CRAM_RI | CRAM_CIGAR; in cram_dependent_data_series()
740 hdr->data_series |= CRAM_RG | CRAM_BF; in cram_dependent_data_series()
788 if (hdr->data_series & CRAM_MQ) hdr->data_series |= CRAM_BF; in cram_dependent_data_series()
795 hdr->data_series |= CRAM_BF | CRAM_CF | CRAM_RL; in cram_dependent_data_series()
2399 if (ds & CRAM_BF) { in cram_decode_slice()
/dports/biology/kallisto/kallisto-0.46.1/ext/htslib/cram/
H A Dcram_structs.h757 CRAM_BF = 0x00000001, enumerator
796 CRAM_SC | CRAM_HC | CRAM_PD | CRAM_RS | CRAM_RL | CRAM_BF)
H A Dcram_decode.c702 hdr->data_series |= CRAM_BF; in cram_dependent_data_series()
705 hdr->data_series |= CRAM_RI | CRAM_BF; in cram_dependent_data_series()
708 hdr->data_series |= CRAM_AP | CRAM_BF; in cram_dependent_data_series()
717 hdr->data_series |= CRAM_CF | CRAM_NF | CRAM_RI | CRAM_NS |CRAM_BF; in cram_dependent_data_series()
720 hdr->data_series |= CRAM_CF | CRAM_NF | CRAM_AP | CRAM_NP | CRAM_BF; in cram_dependent_data_series()
724 CRAM_BF | CRAM_MF | CRAM_RI | CRAM_CIGAR; in cram_dependent_data_series()
740 hdr->data_series |= CRAM_RG | CRAM_BF; in cram_dependent_data_series()
788 if (hdr->data_series & CRAM_MQ) hdr->data_series |= CRAM_BF; in cram_dependent_data_series()
795 hdr->data_series |= CRAM_BF | CRAM_CF | CRAM_RL; in cram_dependent_data_series()
2399 if (ds & CRAM_BF) { in cram_decode_slice()
/dports/biology/py-pysam/pysam-0.18.0/htslib/cram/
H A Dcram_structs.h880 CRAM_BF = 0x00000001, enumerator
919 CRAM_SC | CRAM_HC | CRAM_PD | CRAM_RS | CRAM_RL | CRAM_BF)
H A Dcram_decode.c577 s->data_series |= CRAM_BF; in cram_dependent_data_series()
580 s->data_series |= CRAM_RI | CRAM_BF; in cram_dependent_data_series()
583 s->data_series |= CRAM_AP | CRAM_BF; in cram_dependent_data_series()
592 s->data_series |= CRAM_CF | CRAM_NF | CRAM_RI | CRAM_NS |CRAM_BF; in cram_dependent_data_series()
595 s->data_series |= CRAM_CF | CRAM_NF | CRAM_AP | CRAM_NP | CRAM_BF; in cram_dependent_data_series()
599 CRAM_BF | CRAM_MF | CRAM_RI | CRAM_CIGAR; in cram_dependent_data_series()
615 s->data_series |= CRAM_RG | CRAM_BF; in cram_dependent_data_series()
663 if (s->data_series & CRAM_MQ) s->data_series |= CRAM_BF; in cram_dependent_data_series()
670 s->data_series |= CRAM_BF | CRAM_CF | CRAM_RL; in cram_dependent_data_series()
2454 if (ds & CRAM_BF) { in cram_decode_slice()
/dports/biology/htslib/htslib-1.14/cram/
H A Dcram_structs.h880 CRAM_BF = 0x00000001, enumerator
919 CRAM_SC | CRAM_HC | CRAM_PD | CRAM_RS | CRAM_RL | CRAM_BF)
H A Dcram_decode.c577 s->data_series |= CRAM_BF; in cram_dependent_data_series()
580 s->data_series |= CRAM_RI | CRAM_BF; in cram_dependent_data_series()
583 s->data_series |= CRAM_AP | CRAM_BF; in cram_dependent_data_series()
592 s->data_series |= CRAM_CF | CRAM_NF | CRAM_RI | CRAM_NS |CRAM_BF; in cram_dependent_data_series()
595 s->data_series |= CRAM_CF | CRAM_NF | CRAM_AP | CRAM_NP | CRAM_BF; in cram_dependent_data_series()
599 CRAM_BF | CRAM_MF | CRAM_RI | CRAM_CIGAR; in cram_dependent_data_series()
615 s->data_series |= CRAM_RG | CRAM_BF; in cram_dependent_data_series()
663 if (s->data_series & CRAM_MQ) s->data_series |= CRAM_BF; in cram_dependent_data_series()
670 s->data_series |= CRAM_BF | CRAM_CF | CRAM_RL; in cram_dependent_data_series()
2454 if (ds & CRAM_BF) { in cram_decode_slice()
/dports/biology/iolib/io_lib-io_lib-1-14-10/io_lib/
H A Dcram_decode.c663 s->data_series |= CRAM_BF; in cram_dependent_data_series()
666 s->data_series |= CRAM_RI | CRAM_BF; in cram_dependent_data_series()
669 s->data_series |= CRAM_AP | CRAM_BF; in cram_dependent_data_series()
678 s->data_series |= CRAM_CF | CRAM_NF | CRAM_RI | CRAM_NS |CRAM_BF; in cram_dependent_data_series()
681 s->data_series |= CRAM_CF | CRAM_NF | CRAM_AP | CRAM_NP | CRAM_BF; in cram_dependent_data_series()
685 CRAM_BF | CRAM_MF | CRAM_RI | CRAM_CIGAR; in cram_dependent_data_series()
697 s->data_series |= CRAM_BF; in cram_dependent_data_series()
704 s->data_series |= CRAM_RG | CRAM_BF; in cram_dependent_data_series()
752 if (s->data_series & CRAM_MQ) s->data_series |= CRAM_BF; in cram_dependent_data_series()
759 s->data_series |= CRAM_BF | CRAM_CF | CRAM_RL; in cram_dependent_data_series()
[all …]
H A Dcram_structs.h898 CRAM_BF = 0x00000001, enumerator
937 CRAM_SC | CRAM_HC | CRAM_PD | CRAM_RS | CRAM_RL | CRAM_BF)