/dports/biology/py-pysam/pysam-0.18.0/htslib/cram/ |
H A D | cram_decode.c | 219 switch(CRAM_KEY(cp[-2],cp[-1])) { in cram_decode_compression_header() 220 case CRAM_KEY('M','I'): // was mapped QS included in V1.0 in cram_decode_compression_header() 221 case CRAM_KEY('U','I'): // was unmapped QS included in V1.0 in cram_decode_compression_header() 222 case CRAM_KEY('P','I'): // was unmapped placed in V1.0 in cram_decode_compression_header() 226 case CRAM_KEY('R','N'): in cram_decode_compression_header() 238 case CRAM_KEY('A','P'): in cram_decode_compression_header() 250 case CRAM_KEY('R','R'): in cram_decode_compression_header() 262 case CRAM_KEY('Q','O'): in cram_decode_compression_header() 274 case CRAM_KEY('S','M'): in cram_decode_compression_header() 315 case CRAM_KEY('T','D'): { in cram_decode_compression_header() [all …]
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H A D | cram_encode.c | 189 switch(CRAM_KEY(key[0], key[1])) { in cram_encode_compression_header() 190 case CRAM_KEY('M','I'): in cram_encode_compression_header() 191 case CRAM_KEY('U','I'): in cram_encode_compression_header() 192 case CRAM_KEY('P','I'): in cram_encode_compression_header() 193 case CRAM_KEY('A','P'): in cram_encode_compression_header() 194 case CRAM_KEY('R','N'): in cram_encode_compression_header() 195 case CRAM_KEY('R','R'): in cram_encode_compression_header() 196 case CRAM_KEY('Q','O'): in cram_encode_compression_header() 200 case CRAM_KEY('S','M'): { in cram_encode_compression_header() 231 case CRAM_KEY('T','D'): { in cram_encode_compression_header()
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H A D | cram_io.h | 60 #define CRAM_KEY(a,b) ((((unsigned char) a)<<8)|(((unsigned char) b))) macro
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/dports/biology/htslib/htslib-1.14/cram/ |
H A D | cram_decode.c | 219 switch(CRAM_KEY(cp[-2],cp[-1])) { in cram_decode_compression_header() 220 case CRAM_KEY('M','I'): // was mapped QS included in V1.0 in cram_decode_compression_header() 221 case CRAM_KEY('U','I'): // was unmapped QS included in V1.0 in cram_decode_compression_header() 222 case CRAM_KEY('P','I'): // was unmapped placed in V1.0 in cram_decode_compression_header() 226 case CRAM_KEY('R','N'): in cram_decode_compression_header() 238 case CRAM_KEY('A','P'): in cram_decode_compression_header() 250 case CRAM_KEY('R','R'): in cram_decode_compression_header() 262 case CRAM_KEY('Q','O'): in cram_decode_compression_header() 274 case CRAM_KEY('S','M'): in cram_decode_compression_header() 315 case CRAM_KEY('T','D'): { in cram_decode_compression_header() [all …]
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H A D | cram_encode.c | 189 switch(CRAM_KEY(key[0], key[1])) { in cram_encode_compression_header() 190 case CRAM_KEY('M','I'): in cram_encode_compression_header() 191 case CRAM_KEY('U','I'): in cram_encode_compression_header() 192 case CRAM_KEY('P','I'): in cram_encode_compression_header() 193 case CRAM_KEY('A','P'): in cram_encode_compression_header() 194 case CRAM_KEY('R','N'): in cram_encode_compression_header() 195 case CRAM_KEY('R','R'): in cram_encode_compression_header() 196 case CRAM_KEY('Q','O'): in cram_encode_compression_header() 200 case CRAM_KEY('S','M'): { in cram_encode_compression_header() 231 case CRAM_KEY('T','D'): { in cram_encode_compression_header()
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H A D | cram_io.h | 60 #define CRAM_KEY(a,b) ((((unsigned char) a)<<8)|(((unsigned char) b))) macro
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/dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/cram/ |
H A D | cram_decode.c | 229 switch(CRAM_KEY(cp[-2],cp[-1])) { in cram_decode_compression_header() 230 case CRAM_KEY('M','I'): // was mapped QS included in V1.0 in cram_decode_compression_header() 231 case CRAM_KEY('U','I'): // was unmapped QS included in V1.0 in cram_decode_compression_header() 232 case CRAM_KEY('P','I'): // was unmapped placed in V1.0 in cram_decode_compression_header() 236 case CRAM_KEY('R','N'): in cram_decode_compression_header() 248 case CRAM_KEY('A','P'): in cram_decode_compression_header() 260 case CRAM_KEY('R','R'): in cram_decode_compression_header() 272 case CRAM_KEY('S','M'): in cram_decode_compression_header() 313 case CRAM_KEY('T','D'): { in cram_decode_compression_header() 490 m->key = CRAM_KEY(key[0], key[1]); in cram_decode_compression_header()
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H A D | cram_encode.c | 197 switch(CRAM_KEY(key[0], key[1])) { in cram_encode_compression_header() 198 case CRAM_KEY('M','I'): in cram_encode_compression_header() 202 case CRAM_KEY('U','I'): in cram_encode_compression_header() 206 case CRAM_KEY('P','I'): in cram_encode_compression_header() 210 case CRAM_KEY('A','P'): in cram_encode_compression_header() 214 case CRAM_KEY('R','N'): in cram_encode_compression_header() 218 case CRAM_KEY('R','R'): in cram_encode_compression_header() 222 case CRAM_KEY('S','M'): { in cram_encode_compression_header() 253 case CRAM_KEY('T','D'): { in cram_encode_compression_header()
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H A D | cram_io.h | 60 #define CRAM_KEY(a,b) ((((unsigned char) a)<<8)|(((unsigned char) b))) macro
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/dports/biology/stacks/stacks-2.4/htslib/cram/ |
H A D | cram_decode.c | 203 switch(CRAM_KEY(cp[-2],cp[-1])) { in cram_decode_compression_header() 204 case CRAM_KEY('M','I'): in cram_decode_compression_header() 216 case CRAM_KEY('U','I'): in cram_decode_compression_header() 228 case CRAM_KEY('P','I'): in cram_decode_compression_header() 240 case CRAM_KEY('R','N'): in cram_decode_compression_header() 252 case CRAM_KEY('A','P'): in cram_decode_compression_header() 264 case CRAM_KEY('R','R'): in cram_decode_compression_header() 276 case CRAM_KEY('S','M'): in cram_decode_compression_header() 317 case CRAM_KEY('T','D'): { in cram_decode_compression_header()
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H A D | cram_encode.c | 177 switch(CRAM_KEY(key[0], key[1])) { in cram_encode_compression_header() 178 case CRAM_KEY('M','I'): in cram_encode_compression_header() 182 case CRAM_KEY('U','I'): in cram_encode_compression_header() 186 case CRAM_KEY('P','I'): in cram_encode_compression_header() 190 case CRAM_KEY('A','P'): in cram_encode_compression_header() 194 case CRAM_KEY('R','N'): in cram_encode_compression_header() 198 case CRAM_KEY('R','R'): in cram_encode_compression_header() 202 case CRAM_KEY('S','M'): { in cram_encode_compression_header() 233 case CRAM_KEY('T','D'): { in cram_encode_compression_header()
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H A D | cram_io.h | 59 #define CRAM_KEY(a,b) (((a)<<8)|((b))) macro
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/dports/biology/kallisto/kallisto-0.46.1/ext/htslib/cram/ |
H A D | cram_decode.c | 203 switch(CRAM_KEY(cp[-2],cp[-1])) { in cram_decode_compression_header() 204 case CRAM_KEY('M','I'): in cram_decode_compression_header() 216 case CRAM_KEY('U','I'): in cram_decode_compression_header() 228 case CRAM_KEY('P','I'): in cram_decode_compression_header() 240 case CRAM_KEY('R','N'): in cram_decode_compression_header() 252 case CRAM_KEY('A','P'): in cram_decode_compression_header() 264 case CRAM_KEY('R','R'): in cram_decode_compression_header() 276 case CRAM_KEY('S','M'): in cram_decode_compression_header() 317 case CRAM_KEY('T','D'): { in cram_decode_compression_header()
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H A D | cram_encode.c | 177 switch(CRAM_KEY(key[0], key[1])) { in cram_encode_compression_header() 178 case CRAM_KEY('M','I'): in cram_encode_compression_header() 182 case CRAM_KEY('U','I'): in cram_encode_compression_header() 186 case CRAM_KEY('P','I'): in cram_encode_compression_header() 190 case CRAM_KEY('A','P'): in cram_encode_compression_header() 194 case CRAM_KEY('R','N'): in cram_encode_compression_header() 198 case CRAM_KEY('R','R'): in cram_encode_compression_header() 202 case CRAM_KEY('S','M'): { in cram_encode_compression_header() 233 case CRAM_KEY('T','D'): { in cram_encode_compression_header()
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H A D | cram_io.h | 59 #define CRAM_KEY(a,b) (((a)<<8)|((b))) macro
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/dports/biology/vt/vt-0.57721/lib/htslib/cram/ |
H A D | cram_decode.c | 203 switch(CRAM_KEY(cp[-2],cp[-1])) { in cram_decode_compression_header() 204 case CRAM_KEY('M','I'): in cram_decode_compression_header() 216 case CRAM_KEY('U','I'): in cram_decode_compression_header() 228 case CRAM_KEY('P','I'): in cram_decode_compression_header() 240 case CRAM_KEY('R','N'): in cram_decode_compression_header() 252 case CRAM_KEY('A','P'): in cram_decode_compression_header() 264 case CRAM_KEY('R','R'): in cram_decode_compression_header() 276 case CRAM_KEY('S','M'): in cram_decode_compression_header() 317 case CRAM_KEY('T','D'): { in cram_decode_compression_header()
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H A D | cram_encode.c | 177 switch(CRAM_KEY(key[0], key[1])) { in cram_encode_compression_header() 178 case CRAM_KEY('M','I'): in cram_encode_compression_header() 182 case CRAM_KEY('U','I'): in cram_encode_compression_header() 186 case CRAM_KEY('P','I'): in cram_encode_compression_header() 190 case CRAM_KEY('A','P'): in cram_encode_compression_header() 194 case CRAM_KEY('R','N'): in cram_encode_compression_header() 198 case CRAM_KEY('R','R'): in cram_encode_compression_header() 202 case CRAM_KEY('S','M'): { in cram_encode_compression_header() 233 case CRAM_KEY('T','D'): { in cram_encode_compression_header()
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H A D | cram_io.h | 59 #define CRAM_KEY(a,b) (((a)<<8)|((b))) macro
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/dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/cram/ |
H A D | cram_decode.c | 203 switch(CRAM_KEY(cp[-2],cp[-1])) { in cram_decode_compression_header() 204 case CRAM_KEY('M','I'): in cram_decode_compression_header() 216 case CRAM_KEY('U','I'): in cram_decode_compression_header() 228 case CRAM_KEY('P','I'): in cram_decode_compression_header() 240 case CRAM_KEY('R','N'): in cram_decode_compression_header() 252 case CRAM_KEY('A','P'): in cram_decode_compression_header() 264 case CRAM_KEY('R','R'): in cram_decode_compression_header() 276 case CRAM_KEY('S','M'): in cram_decode_compression_header() 317 case CRAM_KEY('T','D'): { in cram_decode_compression_header()
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H A D | cram_encode.c | 177 switch(CRAM_KEY(key[0], key[1])) { in cram_encode_compression_header() 178 case CRAM_KEY('M','I'): in cram_encode_compression_header() 182 case CRAM_KEY('U','I'): in cram_encode_compression_header() 186 case CRAM_KEY('P','I'): in cram_encode_compression_header() 190 case CRAM_KEY('A','P'): in cram_encode_compression_header() 194 case CRAM_KEY('R','N'): in cram_encode_compression_header() 198 case CRAM_KEY('R','R'): in cram_encode_compression_header() 202 case CRAM_KEY('S','M'): { in cram_encode_compression_header() 233 case CRAM_KEY('T','D'): { in cram_encode_compression_header()
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H A D | cram_io.h | 59 #define CRAM_KEY(a,b) (((a)<<8)|((b))) macro
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/dports/biology/iolib/io_lib-io_lib-1-14-10/io_lib/ |
H A D | cram_decode.c | 212 switch(CRAM_KEY(cp[-2],cp[-1])) { in cram_decode_compression_header() 213 case CRAM_KEY('M','I'): in cram_decode_compression_header() 222 case CRAM_KEY('U','I'): in cram_decode_compression_header() 231 case CRAM_KEY('P','I'): in cram_decode_compression_header() 240 case CRAM_KEY('R','N'): in cram_decode_compression_header() 249 case CRAM_KEY('A','P'): in cram_decode_compression_header() 258 case CRAM_KEY('R','R'): in cram_decode_compression_header() 267 case CRAM_KEY('S','M'): in cram_decode_compression_header() 304 case CRAM_KEY('T','D'): { in cram_decode_compression_header()
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H A D | cram_encode.c | 163 switch(CRAM_KEY(hi->key[0], hi->key[1])) { in cram_encode_compression_header() 164 case CRAM_KEY('M','I'): in cram_encode_compression_header() 168 case CRAM_KEY('U','I'): in cram_encode_compression_header() 172 case CRAM_KEY('P','I'): in cram_encode_compression_header() 176 case CRAM_KEY('A','P'): in cram_encode_compression_header() 180 case CRAM_KEY('R','N'): in cram_encode_compression_header() 184 case CRAM_KEY('R','R'): in cram_encode_compression_header() 188 case CRAM_KEY('S','M'): { in cram_encode_compression_header() 219 case CRAM_KEY('T','D'): { in cram_encode_compression_header()
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H A D | cram_io.h | 69 #define CRAM_KEY(a,b) (((a)<<8)|((b))) macro
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