Home
last modified time | relevance | path

Searched refs:CRAM_KEY (Results 1 – 24 of 24) sorted by relevance

/dports/biology/py-pysam/pysam-0.18.0/htslib/cram/
H A Dcram_decode.c219 switch(CRAM_KEY(cp[-2],cp[-1])) { in cram_decode_compression_header()
220 case CRAM_KEY('M','I'): // was mapped QS included in V1.0 in cram_decode_compression_header()
221 case CRAM_KEY('U','I'): // was unmapped QS included in V1.0 in cram_decode_compression_header()
222 case CRAM_KEY('P','I'): // was unmapped placed in V1.0 in cram_decode_compression_header()
226 case CRAM_KEY('R','N'): in cram_decode_compression_header()
238 case CRAM_KEY('A','P'): in cram_decode_compression_header()
250 case CRAM_KEY('R','R'): in cram_decode_compression_header()
262 case CRAM_KEY('Q','O'): in cram_decode_compression_header()
274 case CRAM_KEY('S','M'): in cram_decode_compression_header()
315 case CRAM_KEY('T','D'): { in cram_decode_compression_header()
[all …]
H A Dcram_encode.c189 switch(CRAM_KEY(key[0], key[1])) { in cram_encode_compression_header()
190 case CRAM_KEY('M','I'): in cram_encode_compression_header()
191 case CRAM_KEY('U','I'): in cram_encode_compression_header()
192 case CRAM_KEY('P','I'): in cram_encode_compression_header()
193 case CRAM_KEY('A','P'): in cram_encode_compression_header()
194 case CRAM_KEY('R','N'): in cram_encode_compression_header()
195 case CRAM_KEY('R','R'): in cram_encode_compression_header()
196 case CRAM_KEY('Q','O'): in cram_encode_compression_header()
200 case CRAM_KEY('S','M'): { in cram_encode_compression_header()
231 case CRAM_KEY('T','D'): { in cram_encode_compression_header()
H A Dcram_io.h60 #define CRAM_KEY(a,b) ((((unsigned char) a)<<8)|(((unsigned char) b))) macro
/dports/biology/htslib/htslib-1.14/cram/
H A Dcram_decode.c219 switch(CRAM_KEY(cp[-2],cp[-1])) { in cram_decode_compression_header()
220 case CRAM_KEY('M','I'): // was mapped QS included in V1.0 in cram_decode_compression_header()
221 case CRAM_KEY('U','I'): // was unmapped QS included in V1.0 in cram_decode_compression_header()
222 case CRAM_KEY('P','I'): // was unmapped placed in V1.0 in cram_decode_compression_header()
226 case CRAM_KEY('R','N'): in cram_decode_compression_header()
238 case CRAM_KEY('A','P'): in cram_decode_compression_header()
250 case CRAM_KEY('R','R'): in cram_decode_compression_header()
262 case CRAM_KEY('Q','O'): in cram_decode_compression_header()
274 case CRAM_KEY('S','M'): in cram_decode_compression_header()
315 case CRAM_KEY('T','D'): { in cram_decode_compression_header()
[all …]
H A Dcram_encode.c189 switch(CRAM_KEY(key[0], key[1])) { in cram_encode_compression_header()
190 case CRAM_KEY('M','I'): in cram_encode_compression_header()
191 case CRAM_KEY('U','I'): in cram_encode_compression_header()
192 case CRAM_KEY('P','I'): in cram_encode_compression_header()
193 case CRAM_KEY('A','P'): in cram_encode_compression_header()
194 case CRAM_KEY('R','N'): in cram_encode_compression_header()
195 case CRAM_KEY('R','R'): in cram_encode_compression_header()
196 case CRAM_KEY('Q','O'): in cram_encode_compression_header()
200 case CRAM_KEY('S','M'): { in cram_encode_compression_header()
231 case CRAM_KEY('T','D'): { in cram_encode_compression_header()
H A Dcram_io.h60 #define CRAM_KEY(a,b) ((((unsigned char) a)<<8)|(((unsigned char) b))) macro
/dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/cram/
H A Dcram_decode.c229 switch(CRAM_KEY(cp[-2],cp[-1])) { in cram_decode_compression_header()
230 case CRAM_KEY('M','I'): // was mapped QS included in V1.0 in cram_decode_compression_header()
231 case CRAM_KEY('U','I'): // was unmapped QS included in V1.0 in cram_decode_compression_header()
232 case CRAM_KEY('P','I'): // was unmapped placed in V1.0 in cram_decode_compression_header()
236 case CRAM_KEY('R','N'): in cram_decode_compression_header()
248 case CRAM_KEY('A','P'): in cram_decode_compression_header()
260 case CRAM_KEY('R','R'): in cram_decode_compression_header()
272 case CRAM_KEY('S','M'): in cram_decode_compression_header()
313 case CRAM_KEY('T','D'): { in cram_decode_compression_header()
490 m->key = CRAM_KEY(key[0], key[1]); in cram_decode_compression_header()
H A Dcram_encode.c197 switch(CRAM_KEY(key[0], key[1])) { in cram_encode_compression_header()
198 case CRAM_KEY('M','I'): in cram_encode_compression_header()
202 case CRAM_KEY('U','I'): in cram_encode_compression_header()
206 case CRAM_KEY('P','I'): in cram_encode_compression_header()
210 case CRAM_KEY('A','P'): in cram_encode_compression_header()
214 case CRAM_KEY('R','N'): in cram_encode_compression_header()
218 case CRAM_KEY('R','R'): in cram_encode_compression_header()
222 case CRAM_KEY('S','M'): { in cram_encode_compression_header()
253 case CRAM_KEY('T','D'): { in cram_encode_compression_header()
H A Dcram_io.h60 #define CRAM_KEY(a,b) ((((unsigned char) a)<<8)|(((unsigned char) b))) macro
/dports/biology/stacks/stacks-2.4/htslib/cram/
H A Dcram_decode.c203 switch(CRAM_KEY(cp[-2],cp[-1])) { in cram_decode_compression_header()
204 case CRAM_KEY('M','I'): in cram_decode_compression_header()
216 case CRAM_KEY('U','I'): in cram_decode_compression_header()
228 case CRAM_KEY('P','I'): in cram_decode_compression_header()
240 case CRAM_KEY('R','N'): in cram_decode_compression_header()
252 case CRAM_KEY('A','P'): in cram_decode_compression_header()
264 case CRAM_KEY('R','R'): in cram_decode_compression_header()
276 case CRAM_KEY('S','M'): in cram_decode_compression_header()
317 case CRAM_KEY('T','D'): { in cram_decode_compression_header()
H A Dcram_encode.c177 switch(CRAM_KEY(key[0], key[1])) { in cram_encode_compression_header()
178 case CRAM_KEY('M','I'): in cram_encode_compression_header()
182 case CRAM_KEY('U','I'): in cram_encode_compression_header()
186 case CRAM_KEY('P','I'): in cram_encode_compression_header()
190 case CRAM_KEY('A','P'): in cram_encode_compression_header()
194 case CRAM_KEY('R','N'): in cram_encode_compression_header()
198 case CRAM_KEY('R','R'): in cram_encode_compression_header()
202 case CRAM_KEY('S','M'): { in cram_encode_compression_header()
233 case CRAM_KEY('T','D'): { in cram_encode_compression_header()
H A Dcram_io.h59 #define CRAM_KEY(a,b) (((a)<<8)|((b))) macro
/dports/biology/kallisto/kallisto-0.46.1/ext/htslib/cram/
H A Dcram_decode.c203 switch(CRAM_KEY(cp[-2],cp[-1])) { in cram_decode_compression_header()
204 case CRAM_KEY('M','I'): in cram_decode_compression_header()
216 case CRAM_KEY('U','I'): in cram_decode_compression_header()
228 case CRAM_KEY('P','I'): in cram_decode_compression_header()
240 case CRAM_KEY('R','N'): in cram_decode_compression_header()
252 case CRAM_KEY('A','P'): in cram_decode_compression_header()
264 case CRAM_KEY('R','R'): in cram_decode_compression_header()
276 case CRAM_KEY('S','M'): in cram_decode_compression_header()
317 case CRAM_KEY('T','D'): { in cram_decode_compression_header()
H A Dcram_encode.c177 switch(CRAM_KEY(key[0], key[1])) { in cram_encode_compression_header()
178 case CRAM_KEY('M','I'): in cram_encode_compression_header()
182 case CRAM_KEY('U','I'): in cram_encode_compression_header()
186 case CRAM_KEY('P','I'): in cram_encode_compression_header()
190 case CRAM_KEY('A','P'): in cram_encode_compression_header()
194 case CRAM_KEY('R','N'): in cram_encode_compression_header()
198 case CRAM_KEY('R','R'): in cram_encode_compression_header()
202 case CRAM_KEY('S','M'): { in cram_encode_compression_header()
233 case CRAM_KEY('T','D'): { in cram_encode_compression_header()
H A Dcram_io.h59 #define CRAM_KEY(a,b) (((a)<<8)|((b))) macro
/dports/biology/vt/vt-0.57721/lib/htslib/cram/
H A Dcram_decode.c203 switch(CRAM_KEY(cp[-2],cp[-1])) { in cram_decode_compression_header()
204 case CRAM_KEY('M','I'): in cram_decode_compression_header()
216 case CRAM_KEY('U','I'): in cram_decode_compression_header()
228 case CRAM_KEY('P','I'): in cram_decode_compression_header()
240 case CRAM_KEY('R','N'): in cram_decode_compression_header()
252 case CRAM_KEY('A','P'): in cram_decode_compression_header()
264 case CRAM_KEY('R','R'): in cram_decode_compression_header()
276 case CRAM_KEY('S','M'): in cram_decode_compression_header()
317 case CRAM_KEY('T','D'): { in cram_decode_compression_header()
H A Dcram_encode.c177 switch(CRAM_KEY(key[0], key[1])) { in cram_encode_compression_header()
178 case CRAM_KEY('M','I'): in cram_encode_compression_header()
182 case CRAM_KEY('U','I'): in cram_encode_compression_header()
186 case CRAM_KEY('P','I'): in cram_encode_compression_header()
190 case CRAM_KEY('A','P'): in cram_encode_compression_header()
194 case CRAM_KEY('R','N'): in cram_encode_compression_header()
198 case CRAM_KEY('R','R'): in cram_encode_compression_header()
202 case CRAM_KEY('S','M'): { in cram_encode_compression_header()
233 case CRAM_KEY('T','D'): { in cram_encode_compression_header()
H A Dcram_io.h59 #define CRAM_KEY(a,b) (((a)<<8)|((b))) macro
/dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/cram/
H A Dcram_decode.c203 switch(CRAM_KEY(cp[-2],cp[-1])) { in cram_decode_compression_header()
204 case CRAM_KEY('M','I'): in cram_decode_compression_header()
216 case CRAM_KEY('U','I'): in cram_decode_compression_header()
228 case CRAM_KEY('P','I'): in cram_decode_compression_header()
240 case CRAM_KEY('R','N'): in cram_decode_compression_header()
252 case CRAM_KEY('A','P'): in cram_decode_compression_header()
264 case CRAM_KEY('R','R'): in cram_decode_compression_header()
276 case CRAM_KEY('S','M'): in cram_decode_compression_header()
317 case CRAM_KEY('T','D'): { in cram_decode_compression_header()
H A Dcram_encode.c177 switch(CRAM_KEY(key[0], key[1])) { in cram_encode_compression_header()
178 case CRAM_KEY('M','I'): in cram_encode_compression_header()
182 case CRAM_KEY('U','I'): in cram_encode_compression_header()
186 case CRAM_KEY('P','I'): in cram_encode_compression_header()
190 case CRAM_KEY('A','P'): in cram_encode_compression_header()
194 case CRAM_KEY('R','N'): in cram_encode_compression_header()
198 case CRAM_KEY('R','R'): in cram_encode_compression_header()
202 case CRAM_KEY('S','M'): { in cram_encode_compression_header()
233 case CRAM_KEY('T','D'): { in cram_encode_compression_header()
H A Dcram_io.h59 #define CRAM_KEY(a,b) (((a)<<8)|((b))) macro
/dports/biology/iolib/io_lib-io_lib-1-14-10/io_lib/
H A Dcram_decode.c212 switch(CRAM_KEY(cp[-2],cp[-1])) { in cram_decode_compression_header()
213 case CRAM_KEY('M','I'): in cram_decode_compression_header()
222 case CRAM_KEY('U','I'): in cram_decode_compression_header()
231 case CRAM_KEY('P','I'): in cram_decode_compression_header()
240 case CRAM_KEY('R','N'): in cram_decode_compression_header()
249 case CRAM_KEY('A','P'): in cram_decode_compression_header()
258 case CRAM_KEY('R','R'): in cram_decode_compression_header()
267 case CRAM_KEY('S','M'): in cram_decode_compression_header()
304 case CRAM_KEY('T','D'): { in cram_decode_compression_header()
H A Dcram_encode.c163 switch(CRAM_KEY(hi->key[0], hi->key[1])) { in cram_encode_compression_header()
164 case CRAM_KEY('M','I'): in cram_encode_compression_header()
168 case CRAM_KEY('U','I'): in cram_encode_compression_header()
172 case CRAM_KEY('P','I'): in cram_encode_compression_header()
176 case CRAM_KEY('A','P'): in cram_encode_compression_header()
180 case CRAM_KEY('R','N'): in cram_encode_compression_header()
184 case CRAM_KEY('R','R'): in cram_encode_compression_header()
188 case CRAM_KEY('S','M'): { in cram_encode_compression_header()
219 case CRAM_KEY('T','D'): { in cram_encode_compression_header()
H A Dcram_io.h69 #define CRAM_KEY(a,b) (((a)<<8)|((b))) macro