Searched refs:ChimeraReAligner (Results 1 – 3 of 3) sorted by relevance
15 ChimeraReAligner::ChimeraReAligner() { m = MothurOut::getInstance(); } in ChimeraReAligner() function in ChimeraReAligner17 ChimeraReAligner::~ChimeraReAligner() {} in ~ChimeraReAligner()19 void ChimeraReAligner::reAlign(Sequence* query, vector<string> parents) { in reAlign()42 void ChimeraReAligner::buildTemplateProfile(vector<string> parents) { in buildTemplateProfile()79 void ChimeraReAligner::createAlignMatrix(int queryUnalignedLength, int alignmentLength){ in createAlignMatrix()98 void ChimeraReAligner::fillAlignMatrix(string query){ in fillAlignMatrix()139 int ChimeraReAligner::calcMatchScore(bases p, char q){ in calcMatchScore()163 string ChimeraReAligner::getNewAlignment(string query){ in getNewAlignment()
34 class ChimeraReAligner {37 ChimeraReAligner(); 38 ~ChimeraReAligner();
571 ChimeraReAligner realigner; in getChimeras()