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Searched refs:DS_DL (Results 1 – 25 of 25) sorted by relevance

/dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/cram/
H A Dcram_encode.c384 if (h->codecs[DS_DL]) { in cram_encode_compression_header()
385 if (-1 == h->codecs[DS_DL]->store(h->codecs[DS_DL], map, "DL", in cram_encode_compression_header()
745 r |= h->codecs[DS_DL]->encode(s, h->codecs[DS_DL], in cram_encode_slice_read()
1628 h->codecs[DS_DL] = cram_encoder_init(cram_stats_encoding(fd, c->stats[DS_DL]), in cram_encode_container()
1629 c->stats[DS_DL], E_INT, NULL, in cram_encode_container()
1631 if (c->stats[DS_DL]->nvals && !h->codecs[DS_DL]) goto_err; in cram_encode_container()
1979 if (cram_stats_add(c->stats[DS_DL], len) < 0) return -1; in cram_add_deletion()
H A Dcram_structs.h157 DS_DL, enumerator
H A Dcram_decode.c441 ds_id = DS_DL; type = E_INT; in cram_decode_compression_header()
567 DS_BF, DS_AP, DS_FP, DS_RL, DS_DL, DS_NF, DS_BA, DS_QS, in cram_dependent_data_series()
1378 if (!c->comp_hdr->codecs[DS_DL]) return -1; in cram_decode_seq()
1379 r |= c->comp_hdr->codecs[DS_DL] in cram_decode_seq()
1380 ->decode(s, c->comp_hdr->codecs[DS_DL], blk, in cram_decode_seq()
/dports/biology/py-pysam/pysam-0.18.0/htslib/cram/
H A Dcram_encode.c362 if (h->codecs[DS_DL]) { in cram_encode_compression_header()
363 if (-1 == h->codecs[DS_DL]->store(h->codecs[DS_DL], map, "DL", in cram_encode_compression_header()
707 r |= h->codecs[DS_DL]->encode(s, h->codecs[DS_DL], in cram_encode_slice_read()
1740 h->codecs[DS_DL] = cram_encoder_init(cram_stats_encoding(fd, c->stats[DS_DL]), in cram_encode_container()
1741 c->stats[DS_DL], E_INT, NULL, in cram_encode_container()
1743 if (c->stats[DS_DL]->nvals && !h->codecs[DS_DL]) goto_err; in cram_encode_container()
2097 if (cram_stats_add(c->stats[DS_DL], len) < 0) return -1; in cram_add_deletion()
H A Dcram_structs.h174 DS_DL, enumerator
H A Dcram_decode.c433 ds_id = DS_DL; type = E_INT; in cram_decode_compression_header()
559 DS_BF, DS_AP, DS_FP, DS_RL, DS_DL, DS_NF, DS_BA, DS_QS, in cram_dependent_data_series()
1379 if (!c->comp_hdr->codecs[DS_DL]) return -1; in cram_decode_seq()
1380 r |= c->comp_hdr->codecs[DS_DL] in cram_decode_seq()
1381 ->decode(s, c->comp_hdr->codecs[DS_DL], blk, in cram_decode_seq()
/dports/biology/htslib/htslib-1.14/cram/
H A Dcram_encode.c362 if (h->codecs[DS_DL]) { in cram_encode_compression_header()
363 if (-1 == h->codecs[DS_DL]->store(h->codecs[DS_DL], map, "DL", in cram_encode_compression_header()
707 r |= h->codecs[DS_DL]->encode(s, h->codecs[DS_DL], in cram_encode_slice_read()
1740 h->codecs[DS_DL] = cram_encoder_init(cram_stats_encoding(fd, c->stats[DS_DL]), in cram_encode_container()
1741 c->stats[DS_DL], E_INT, NULL, in cram_encode_container()
1743 if (c->stats[DS_DL]->nvals && !h->codecs[DS_DL]) goto_err; in cram_encode_container()
2097 if (cram_stats_add(c->stats[DS_DL], len) < 0) return -1; in cram_add_deletion()
H A Dcram_structs.h174 DS_DL, enumerator
H A Dcram_decode.c433 ds_id = DS_DL; type = E_INT; in cram_decode_compression_header()
559 DS_BF, DS_AP, DS_FP, DS_RL, DS_DL, DS_NF, DS_BA, DS_QS, in cram_dependent_data_series()
1379 if (!c->comp_hdr->codecs[DS_DL]) return -1; in cram_decode_seq()
1380 r |= c->comp_hdr->codecs[DS_DL] in cram_decode_seq()
1381 ->decode(s, c->comp_hdr->codecs[DS_DL], blk, in cram_decode_seq()
/dports/biology/vt/vt-0.57721/lib/htslib/cram/
H A Dcram_encode.c364 if (h->codecs[DS_DL]) { in cram_encode_compression_header()
365 if (-1 == h->codecs[DS_DL]->store(h->codecs[DS_DL], map, "DL", in cram_encode_compression_header()
694 r |= h->codecs[DS_DL]->encode(s, h->codecs[DS_DL], in cram_encode_slice_read()
1516 h->codecs[DS_DL] = cram_encoder_init(cram_stats_encoding(fd, c->stats[DS_DL]), in cram_encode_container()
1517 c->stats[DS_DL], E_INT, NULL, in cram_encode_container()
1839 cram_stats_add(c->stats[DS_DL], len); in cram_add_deletion()
H A Dcram_structs.h156 DS_DL, enumerator
H A Dcram_decode.c529 if (!(hdr->codecs[DS_DL] = cram_decoder_init(encoding, cp, size, in cram_decode_compression_header()
684 DS_BF, DS_AP, DS_FP, DS_RL, DS_DL, DS_NF, DS_BA, DS_QS, in cram_dependent_data_series()
1473 if (!c->comp_hdr->codecs[DS_DL]) return -1; in cram_decode_seq()
1474 r |= c->comp_hdr->codecs[DS_DL] in cram_decode_seq()
1475 ->decode(s, c->comp_hdr->codecs[DS_DL], blk, in cram_decode_seq()
/dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/cram/
H A Dcram_encode.c364 if (h->codecs[DS_DL]) { in cram_encode_compression_header()
365 if (-1 == h->codecs[DS_DL]->store(h->codecs[DS_DL], map, "DL", in cram_encode_compression_header()
694 r |= h->codecs[DS_DL]->encode(s, h->codecs[DS_DL], in cram_encode_slice_read()
1516 h->codecs[DS_DL] = cram_encoder_init(cram_stats_encoding(fd, c->stats[DS_DL]), in cram_encode_container()
1517 c->stats[DS_DL], E_INT, NULL, in cram_encode_container()
1839 cram_stats_add(c->stats[DS_DL], len); in cram_add_deletion()
H A Dcram_structs.h156 DS_DL, enumerator
H A Dcram_decode.c529 if (!(hdr->codecs[DS_DL] = cram_decoder_init(encoding, cp, size, in cram_decode_compression_header()
684 DS_BF, DS_AP, DS_FP, DS_RL, DS_DL, DS_NF, DS_BA, DS_QS, in cram_dependent_data_series()
1473 if (!c->comp_hdr->codecs[DS_DL]) return -1; in cram_decode_seq()
1474 r |= c->comp_hdr->codecs[DS_DL] in cram_decode_seq()
1475 ->decode(s, c->comp_hdr->codecs[DS_DL], blk, in cram_decode_seq()
/dports/biology/stacks/stacks-2.4/htslib/cram/
H A Dcram_encode.c364 if (h->codecs[DS_DL]) { in cram_encode_compression_header()
365 if (-1 == h->codecs[DS_DL]->store(h->codecs[DS_DL], map, "DL", in cram_encode_compression_header()
694 r |= h->codecs[DS_DL]->encode(s, h->codecs[DS_DL], in cram_encode_slice_read()
1516 h->codecs[DS_DL] = cram_encoder_init(cram_stats_encoding(fd, c->stats[DS_DL]), in cram_encode_container()
1517 c->stats[DS_DL], E_INT, NULL, in cram_encode_container()
1839 cram_stats_add(c->stats[DS_DL], len); in cram_add_deletion()
H A Dcram_structs.h156 DS_DL, enumerator
H A Dcram_decode.c529 if (!(hdr->codecs[DS_DL] = cram_decoder_init(encoding, cp, size, in cram_decode_compression_header()
684 DS_BF, DS_AP, DS_FP, DS_RL, DS_DL, DS_NF, DS_BA, DS_QS, in cram_dependent_data_series()
1468 if (!c->comp_hdr->codecs[DS_DL]) return -1; in cram_decode_seq()
1469 r |= c->comp_hdr->codecs[DS_DL] in cram_decode_seq()
1470 ->decode(s, c->comp_hdr->codecs[DS_DL], blk, in cram_decode_seq()
/dports/biology/iolib/io_lib-io_lib-1-14-10/io_lib/
H A Dcram_encode.c334 if (h->codecs[DS_DL]) { in cram_encode_compression_header()
335 if (-1 == h->codecs[DS_DL]->store(h->codecs[DS_DL], map, "DL", fd->version)) in cram_encode_compression_header()
672 r |= h->codecs[DS_DL]->encode(s, h->codecs[DS_DL], in cram_encode_slice_read()
1576 h->codecs[DS_DL] = cram_encoder_init(cram_stats_encoding(fd, c->stats[DS_DL]), in cram_encode_container()
1577 c->stats[DS_DL], E_INT, NULL, in cram_encode_container()
1890 cram_stats_add(c->stats[DS_DL], len); in cram_add_deletion()
H A Dcram_decode.c500 if (!(hdr->codecs[DS_DL] = cram_decoder_init(encoding, cp, size, E_INT, in cram_decode_compression_header()
645 DS_BF, DS_AP, DS_FP, DS_RL, DS_DL, DS_NF, DS_BA, DS_QS, in cram_dependent_data_series()
1560 if (!c->comp_hdr->codecs[DS_DL]) return -1; in cram_decode_seq()
1561 r |= c->comp_hdr->codecs[DS_DL] in cram_decode_seq()
1562 ->decode(s, c->comp_hdr->codecs[DS_DL], blk, in cram_decode_seq()
H A Dcram_structs.h144 DS_DL, enumerator
/dports/biology/kallisto/kallisto-0.46.1/ext/htslib/cram/
H A Dcram_encode.c364 if (h->codecs[DS_DL]) { in cram_encode_compression_header()
365 if (-1 == h->codecs[DS_DL]->store(h->codecs[DS_DL], map, "DL", in cram_encode_compression_header()
696 r |= h->codecs[DS_DL]->encode(s, h->codecs[DS_DL], in cram_encode_slice_read()
1521 h->codecs[DS_DL] = cram_encoder_init(cram_stats_encoding(fd, c->stats[DS_DL]), in cram_encode_container()
1522 c->stats[DS_DL], E_INT, NULL, in cram_encode_container()
1845 cram_stats_add(c->stats[DS_DL], len); in cram_add_deletion()
H A Dcram_structs.h156 DS_DL, enumerator
H A Dcram_decode.c530 if (!(hdr->codecs[DS_DL] = cram_decoder_init(encoding, cp, size, in cram_decode_compression_header()
684 DS_BF, DS_AP, DS_FP, DS_RL, DS_DL, DS_NF, DS_BA, DS_QS, in cram_dependent_data_series()
1470 if (!c->comp_hdr->codecs[DS_DL]) return -1; in cram_decode_seq()
1471 r |= c->comp_hdr->codecs[DS_DL] in cram_decode_seq()
1472 ->decode(s, c->comp_hdr->codecs[DS_DL], blk, in cram_decode_seq()
/dports/biology/iolib/io_lib-io_lib-1-14-10/progs/
H A Dcram_dump.c583 r = c->comp_hdr->codecs[DS_DL]->decode(s,c->comp_hdr->codecs[DS_DL], b, (char *)&i32, &out_sz); in main()