Searched refs:DeltaEdgelet_t (Results 1 – 4 of 4) sorted by relevance
| /dports/biology/mummer/mummer-4.0.0beta2-2-g277dac5/src/tigr/ |
| H A D | show-diff.cc | 36 bool operator()(const DeltaEdgelet_t * i, const DeltaEdgelet_t * j) const in operator ()()
43 bool operator()(const DeltaEdgelet_t * i, const DeltaEdgelet_t * j) const in operator ()()
63 bool operator()(const DeltaEdgelet_t * i, const DeltaEdgelet_t * j) const in operator ()()
70 bool operator()(const DeltaEdgelet_t * i, const DeltaEdgelet_t * j) const in operator ()()
139 DeltaEdgelet_t lpad, rpad; // padding for the alignment vector in PrintDiff()
144 DeltaEdgelet_t *A, *PA, *PGA; // alignment, prev, prev global in PrintDiff()
145 vector<DeltaEdgelet_t *> aligns; in PrintDiff()
149 vector<DeltaEdgelet_t *>::iterator eli; in PrintDiff()
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| H A D | delta.cc | 29 DeltaEdgelet_t * a;
40 bool operator() (const DeltaEdgelet_t * i, const DeltaEdgelet_t * j) const in operator ()()
62 bool operator() (const DeltaEdgelet_t * i, const DeltaEdgelet_t * j) const in operator ()()
91 (const DeltaEdgelet_t * i, const DeltaEdgelet_t * j) in DiffAligns()
333 DeltaEdgelet_t * p; in build()
339 p = new DeltaEdgelet_t(); in build()
467 vector<DeltaEdgelet_t *>::iterator k; in clean()
717 vector<DeltaEdgelet_t *> edgelets; in flagGLIS()
878 vector<DeltaEdgelet_t *> edgelets; in flagQLIS()
999 vector<DeltaEdgelet_t *> edgelets; in flagRLIS()
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| H A D | show-snps.cc | 228 vector<DeltaEdgelet_t *>::iterator li; in main()
265 vector<DeltaEdgelet_t *>::iterator eli; in CheckSNPs()
349 vector<DeltaEdgelet_t *>::iterator li; in FindSNPs()
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| /dports/biology/mummer/mummer-4.0.0beta2-2-g277dac5/include/mummer/ |
| H A D | delta.hh | 334 struct DeltaEdgelet_t;
345 DeltaEdgelet_t * lp;
359 struct DeltaEdgelet_t struct
378 DeltaEdgelet_t ( ) in DeltaEdgelet_t() argument
390 ~DeltaEdgelet_t ( ) in ~DeltaEdgelet_t() argument
427 std::vector<DeltaEdgelet_t *> edgelets; //!< the set of individual alignments argument
434 std::vector<DeltaEdgelet_t *>::iterator i; in ~DeltaEdge_t()
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