| /dports/biology/phyml/phyml-3.3.20200621/src/ |
| H A D | stats.h | 44 int DiscreteGamma (phydbl freqK[], phydbl rK[],phydbl alfa, phydbl beta, int K, int median);
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| H A D | models.c | 684 DiscreteGamma(mod->ras->gamma_r_proba->v, in Update_RAS()
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| H A D | m4.c | 348 …DiscreteGamma(m4mod->h_fq,m4mod->multipl,m4mod->alpha,m4mod->alpha,m4mod->n_h,mod->ras->gamma_medi… in M4_Update_Qmat()
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| H A D | lk.c | 1920 DiscreteGamma(mod->ras->gamma_r_proba->v, mod->ras->gamma_rr->v, mod->ras->alpha->v, in Lk_Given_Two_Seq()
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| H A D | stats.c | 1913 int DiscreteGamma (phydbl freqK[], phydbl rK[], in DiscreteGamma() function
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| /dports/biology/paml/paml4.9j/src/ |
| H A D | baseml.c | 827 DiscreteGamma(com.freqK, com.rK, com.alpha, com.alpha, com.ncatG, DGammaUseMedian); in DetailOutput()
1189 DiscreteGamma(com.freqK, com.rK, com.alpha, com.alpha, K, DGammaUseMedian); in GetInitials()
1307 DiscreteGamma(com.freqK, com.rK, com.alpha, com.alpha, K, DGammaUseMedian); in SetParameters()
1373 DiscreteGamma(com.freqK, com.rK, com.alpha, com.alpha, com.ncatG, DGammaUseMedian); in SetPGene()
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| H A D | paml.h | 87 int DiscreteGamma (double freqK[], double rK[], double alpha, double beta, int K, int UseMedian);
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| H A D | pamp.c | 251 DiscreteGamma(freqK, rK, a, a, com.ncatG, 0); in lfunAlpha_YK96()
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| H A D | tools.c | 704 DiscreteGamma(freqK, rK, alpha, alpha, K, DGammaUseMedian); in Rates4Sites()
2518 int DiscreteGamma(double freqK[], double rK[], double alpha, double beta, int K, int UseMedian) in DiscreteGamma() function
2582 DiscreteGamma(freqK, rK, alpha, alpha, K, DGammaUseMedian); in AutodGamma()
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| H A D | codeml.c | 1262 DiscreteGamma(com.freqK, com.rK, com.alpha, com.alpha, com.ncatG, DGammaUseMedian); in DetailOutput()
2341 DiscreteGamma(com.freqK, com.rK, com.alpha, com.alpha, com.ncatG, DGammaUseMedian); in GetInitials()
2389 DiscreteGamma(com.freqK, com.rK, com.alpha, com.alpha, com.ncatG, DGammaUseMedian); in SetPGene()
2774 DiscreteGamma(com.freqK, com.rK, com.alpha, com.alpha, com.ncatG, DGammaUseMedian); in SetParameters()
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| H A D | mcmctree.c | 482 DiscreteGamma(com.freqK, com.rK, com.alpha, com.alpha, com.ncatG, DGammaUseMedian); in UseLocus()
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| H A D | treesub.c | 9124 DiscreteGamma(com.freqK, com.rK, com.alpha, com.alpha, com.ncatG, DGammaUseMedian); in UseLocus()
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| /dports/biology/mrbayes/MrBayes-3.2.7/src/ |
| H A D | utils.h | 224 int DiscreteGamma (MrBFlt *rK, MrBFlt alfa, MrBFlt beta, int K, int median);
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| H A D | model.c | 10570 … if (DiscreteGamma (subValue, value[0], value[0], param->nSubValues, 0) == ERROR) in DoStartvalsParm()
11071 …if (DiscreteGamma (&value[mp->numM10BetaCats], subValue[mp->numM10BetaCats + mp->numM10GammaCats +… in FillNormalParams()
11224 if (DiscreteGamma (subValue, value[0], value[0], mp->numGammaCats, 0) == ERROR) in FillNormalParams()
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| H A D | proposal.c | 8714 …if (DiscreteGamma (&vals[mp->numM10BetaCats], subVals[mp->numM10BetaCats + mp->numM10GammaCats + 6… in Move_OmegaGamma_M()
14039 if (DiscreteGamma (rates, newA, newA, mp->numGammaCats, 0) == ERROR) in Move_RateShape_M()
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| H A D | utils.c | 10429 int DiscreteGamma (MrBFlt *rK, MrBFlt alfa, MrBFlt beta, int K, int median) in DiscreteGamma() function
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