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Searched refs:ELEMENTARYATOM_SUBTYPE_VAL (Results 1 – 6 of 6) sorted by relevance

/dports/science/opsin/dan2097-opsin-9b25f7546b67/opsin-core/src/main/java/uk/ac/cam/ch/wwmm/opsin/
H A DXmlDeclarations.java472 static final String ELEMENTARYATOM_SUBTYPE_VAL ="elementaryAtom"; field in XmlDeclarations
H A DStructureBuilder.java518 if (ELEMENTARYATOM_SUBTYPE_VAL.equals(rightMostGroup.getAttributeValue(SUBTYPE_ATR))){ in buildOxide()
558 …if (atomToAddOxideTo.getElement() == ChemEl.C && !ELEMENTARYATOM_SUBTYPE_VAL.equals(groupToModify.… in buildOxide()
565 if (ELEMENTARYATOM_SUBTYPE_VAL.equals(subTypeVal)){ in buildOxide()
1176 … if (group != null && ELEMENTARYATOM_SUBTYPE_VAL.equals(group.getAttributeValue(SUBTYPE_ATR))) { in applyAluminiumHydrideSpecialCase()
1997 …endantElementsWithTagNameAndAttribute(molecule, GROUP_EL, SUBTYPE_ATR, ELEMENTARYATOM_SUBTYPE_VAL); in getMetalsThatCanBeImplicitlyCations()
2225 if (ELEMENTARYATOM_SUBTYPE_VAL.equals(connectedAtom.getFrag().getSubType()) || in processSpecialCases()
2306 if (ELEMENTARYATOM_SUBTYPE_VAL.equals(group.getAttributeValue(SUBTYPE_ATR))){ in processOxidationNumbers()
H A DWordRules.java368 …Attribute(possibleElementaryAtomContainingWord, GROUP_EL, SUBTYPE_ATR, ELEMENTARYATOM_SUBTYPE_VAL); in matchWordRule()
H A DFragmentTools.java1069 if (atomCount == 1 && ELEMENTARYATOM_SUBTYPE_VAL.equals(atomList.get(0).getFrag().getSubType())) { in findnAtomsForSubstitution()
H A DComponentProcessor.java252 if (ELEMENTARYATOM_SUBTYPE_VAL.equals(group.getAttributeValue(SUBTYPE_ATR))) { in resolveGroup()
5268 …(ELEMENTARYATOM_SUBTYPE_VAL.equals(possibleElement.getAttributeValue(SUBTYPE_ATR)) || possibleElem… in isMonoFollowedByElement()
H A DComponentGenerator.java2719 } else if (ELEMENTARYATOM_SUBTYPE_VAL.equals(groupSubType)) { in handleGroupIrregularities()