Home
last modified time | relevance | path

Searched refs:EfN (Results 1 – 25 of 27) sorted by relevance

12

/dports/biology/ugene/ugene-40.1/tests/hmm3/common/phmmer/
H A Dmake_all_phmmer.sh27 ./phmmer --EvL 50 --EvN 100 --EfL 50 --EfN 100 --Eft 0.01 tt_query.fa tt_db.fa >tt_query_tt_db_eval…
28 ./phmmer --EvL 150 --EvN 190 --EfL 109 --EfN 250 --Eft 0.5 rnd_query2.fa rnd_db.fa >rnd_query2_rnd_…
29 ./phmmer --seed 110 --EvL 15 --EvN 230 --EfL 36 --EfN 33 --Eft 0.99 rnd_query.fa rnd_db.fa >rnd_que…
30 ./phmmer --seed 1000 --EvL 50 --EvN 30 --EfL 1000 --EfN 1300 --Eft 0.00001 fibronectin1.2_1.fa titi…
/dports/biology/ugene/ugene-40.1/tests/hmm3/common/hmmbuild/
H A Dmake_all_files.sh31 ./hmmbuild --fast --wgsc --enone --EvL 110 --EvN 215 --EfL 90 --EfN 178 --Eft 0.23 ABC_tran_gsc_fas…
39 ./hmmbuild --fast --wnone --eset 11.4 --EvL 150 --EvN 220 --EfL 123 --EfN 197 --Eft 0.01 2-Hacid_dh…
62 ./hmmbuild --hand --wgsc --enone --EvL 110 --EvN 215 --EfL 90 --EfN 178 --Eft 0.23 ABC_tran_gsc_han…
70 ./hmmbuild --hand --wnone --eset 11.4 --EvL 150 --EvN 220 --EfL 123 --EfN 197 --Eft 0.01 2-Hacid_dh…
/dports/biology/infernal/infernal-1.1.3/hmmer/src/
H A Devalues.c70 int EfN = ((cfg_b != NULL) ? cfg_b->EfN : 200); in p7_Calibrate() local
107 …if ((status = p7_Tau (r, om, bg, EfL, EfN, lambda, Eft, &tau)) != eslOK) ESL_XFAIL(status, e… in p7_Calibrate()
526 int EfN = esl_opt_GetInteger(go, "--EfN"); in main() local
553 if (do_fwd) p7_Tau (r, om, bg, EfL, EfN, lambda, Eft, &ftau); in main()
H A Dhmmsim.c629 int EfN = esl_opt_GetInteger(go, "--EfN"); in process_workunit() local
658 …else if (esl_opt_GetBoolean(go, "--fwd")) p7_Tau (cfg->r, om, cfg->bg, EfL, EfN, lambda, Eft… in process_workunit()
H A Dphmmer.c442 bld->EfN = esl_opt_GetInteger(go, "--EfN"); in serial_master()
935 bld->EfN = esl_opt_GetInteger(go, "--EfN"); in mpi_master()
1271 bld->EfN = esl_opt_GetInteger(go, "--EfN"); in mpi_worker()
H A Dhmmdwrkr.c585 bld->EfN = esl_opt_GetInteger(info->opts, "--EfN"); in search_thread()
H A Dp7_builder.c118 bld->EfN = (go != NULL) ? esl_opt_GetInteger(go, "--EfN") : 200; in p7_builder_Create()
H A Dhmmdwrkr_shard.c614 bld->EfN = esl_opt_GetInteger(info->opts, "--EfN"); in search_thread()
H A Dhmmer.h1292 int EfN; /* # of sequences generated for Forward fitting */ member
/dports/biology/hmmer/hmmer-3.3/src/
H A Devalues.c70 int EfN = ((cfg_b != NULL) ? cfg_b->EfN : 200); in p7_Calibrate() local
107 …if ((status = p7_Tau (r, om, bg, EfL, EfN, lambda, Eft, &tau)) != eslOK) ESL_XFAIL(status, e… in p7_Calibrate()
526 int EfN = esl_opt_GetInteger(go, "--EfN"); in main() local
553 if (do_fwd) p7_Tau (r, om, bg, EfL, EfN, lambda, Eft, &ftau); in main()
H A Dhmmsim.c629 int EfN = esl_opt_GetInteger(go, "--EfN"); in process_workunit() local
658 …else if (esl_opt_GetBoolean(go, "--fwd")) p7_Tau (cfg->r, om, cfg->bg, EfL, EfN, lambda, Eft… in process_workunit()
H A Dphmmer.c442 bld->EfN = esl_opt_GetInteger(go, "--EfN"); in serial_master()
935 bld->EfN = esl_opt_GetInteger(go, "--EfN"); in mpi_master()
1271 bld->EfN = esl_opt_GetInteger(go, "--EfN"); in mpi_worker()
H A Dhmmdwrkr.c585 bld->EfN = esl_opt_GetInteger(info->opts, "--EfN"); in search_thread()
H A Dp7_builder.c118 bld->EfN = (go != NULL) ? esl_opt_GetInteger(go, "--EfN") : 200; in p7_builder_Create()
H A Dhmmdwrkr_shard.c614 bld->EfN = esl_opt_GetInteger(info->opts, "--EfN"); in search_thread()
H A Dhmmer.h1292 int EfN; /* # of sequences generated for Forward fitting */ member
/dports/biology/infernal/infernal-1.1.3/hmmer/testsuite/
H A Dtestsuite.sqc131 1 exercise build/--EfN @src/hmmbuild@ --EfN 250 --EmL 10 --EvL 10 --EfL 10 %H…
246 1 exercise j/--EfN @src/jackhmmer@ --EfN 250 --EmL 10 --EvL 10 --EfL …
292 1 exercise phmmer/--EfN @src/phmmer@ --EfN 250 --EmL 10 --EvL 10 --EfL 1…
/dports/biology/hmmer/hmmer-3.3/testsuite/
H A Dtestsuite.sqc131 1 exercise build/--EfN @src/hmmbuild@ --EfN 250 --EmL 10 --EvL 10 --EfL 10 %H…
246 1 exercise j/--EfN @src/jackhmmer@ --EfN 250 --EmL 10 --EvL 10 --EfL …
292 1 exercise phmmer/--EfN @src/phmmer@ --EfN 250 --EmL 10 --EvL 10 --EfL 1…
/dports/science/hdf/hdf-4.2.15/hdf/util/MacProjects/
H A Dvshow.project.hqx6 !"P"TEP)!!!#k!!!!"f&3EfN!!!$F!!!!#%e*G'8!!!$i!!!!#A45CA-!!!%9!!!
H A Dhdfpack.project.hqx6 !"P"TEP)!!!#k!!!!"f&3EfN!!!$F!!!!#%e*G'8!!!$i!!!!#A45CA-!!!%9!!!
H A DhdftoR8.project.hqx447 3EfN!!!$F!!!!#%e*G'8!!!$i!!!!#A45CA-!!!%9!!!!#NePER8!!!%e!!!!#h4
/dports/graphics/tachyon/tachyon/scenes/imaps/
H A Ddirt2.ppm12 …EfN:]D0�x[ڭ�ت�ܱ�С�ɛ|ͣ�ŗxѥ�•v�vY�eLE1#?+wT=�}b�wZmN9?)�t^mO8�|^yU>pN:Z@-ZA.Q9'bG0�bFW?+F1 x^I@)d…
/dports/math/cantor/cantor-21.12.3/src/test/data/
H A DAEC.04 - Evolutionary Strategies and Covariance Matrix Adaptation.ipynb769 …xfHMZPJBN/354+bpslwOPxWJCDquiYMQyaTCWEYLv3MMAw2NjYYDAbf+L/j2zp//ud/zj/+4z8+EfN+/OMfPwt8z/OrPM+C3vM…
/dports/science/smoldyn/smoldyn-2.67/examples/S94_archive/Andrews_2016/excluded volume/
H A DExcludedVolme.nb78961 3ZELhnFfb898S0kmskz22b1SosFRa9g0IncGD1W8p1+7EfN/QS1CkMuAeuCS
/dports/chinese/dictd-database/dict-zh-1.6/
H A Dpydict.index487 a gay bird EfN v

12