Home
last modified time | relevance | path

Searched refs:GFM (Results 1 – 25 of 285) sorted by relevance

12345678910>>...12

/dports/biology/hisat2/hisat2-2.2.1/
H A Daligner_seed2.cpp47 pair<GFM*, GFM*> gfms = GFM::fromStrings<SString<char> >( in main()
233 GFM::default_bigEndian, in main()
234 GFM::default_lineRate, in main()
235 GFM::default_offRate, in main()
239 GFM::default_bmax, in main()
241 GFM::default_bmaxDivN, in main()
242 GFM::default_dcv, in main()
243 GFM::default_seed, in main()
1065 GFM::default_bmax, in main()
1068 GFM::default_dcv, in main()
[all …]
H A Daligner_seed2.h1084 const GFM<index_t>& gfmFw, // forward index
1085 const GFM<index_t>& gfmBw, // mirror index
1279 const GFM<index_t>& gfmFw, // forward index
1280 const GFM<index_t>& gfmBw, // mirror index
1522 const GFM<index_t>& gfmFw, // forward index
1523 const GFM<index_t>& gfmBw, // mirror index
2006 const GFM<index_t>& gfmFw, // forward index
2007 const GFM<index_t>& gfmBw, // mirror index
2017 const GFM<index_t>& gfmFw, // forward index
2018 const GFM<index_t>& gfmBw, // mirror index
[all …]
H A Dhisat2_inspect.cpp271 static void print_index_sequences(ostream& fout, GFM<index_t>& gfm) in print_index_sequences()
353 GFM<index_t> gfm( in print_snps()
437 GFM<index_t> gfm( in print_splicesites()
511 GFM<index_t> gfm( in print_exons()
584 int32_t flags = GFM<index_t>::readVersionFlags(fname, major, minor, extra_version); in print_index_summary()
587 GFM<index_t> gfm( in print_index_summary()
H A Daligner_driver.h201 const GFM<index_t>& gfmFw,
202 const GFM<index_t>& gfmBw,
H A Daligner_sw_driver.h338 const GFM<index_t>& gfmFw, // BWT
339 const GFM<index_t>* gfmBw, // BWT'
387 const GFM<index_t>& gfmFw, // BWT
388 const GFM<index_t>* gfmBw, // BWT'
460 const GFM<index_t>& gfm, // BWT
487 const GFM<index_t>& gfmFw, // BWT
488 const GFM<index_t>* gfmBw, // BWT'
860 const GFM<index_t> *gfm = &gfmFw; in extend()
926 const GFM<index_t> *gfm = gfmBw; in extend()
1016 const GFM<index_t>& gfmFw, // BWT in prioritizeSATups()
[all …]
/dports/textproc/py-markdown2/markdown2-2.3.6/test/tm-cases/
H A Dtables.text39 *Note:* This fails in GFM but works with PHP-Markdown.
50 *Note:* This passes GFM, but fails in PHP-Markdown.
90 *Note:* This works in PHP-Markdown, fails in GFM.
99 *Note:* This works in PHP-Markdown, fails in GFM.
108 *Note:* Works in both PHP-Markdown and GFM.
117 *Note*: This fails in GFM and *sort of* works in PHP-Markdown, where it
/dports/math/cado-nfs/cado-nfs-f4284e2391121b2bfb97bc4880b6273c7250dc2f/sieve/strategies/
H A Dcreate_strat_file.sh31 GFM=$cadodir/sieve/strategies/gfm
101 …cmd="$GFM -lb $fbb -ub $lpb -m $m -b1min $b1min -b1max $b1max -b1step $b1step -cmin $cmin -cmax $…
121 $GFM -fch -fch_in data_PP1_27 -fch_out data_PP1_27_ch
122 $GFM -fch -fch_in data_PM1 -fch_out data_PM1_ch
123 $GFM -fch -fch_in data_PP1_65 -fch_out data_PP1_65_ch
124 $GFM -fch -fch_in data_ECM_M12 -fch_out data_ECM_M12_ch
125 $GFM -fch -fch_in data_ECM_M16 -fch_out data_ECM_M16_ch
126 $GFM -fch -fch_in data_ECM_B12 -fch_out data_ECM_B12_ch
/dports/textproc/markdown-mode.el/markdown-mode-2.4/tests/
H A Dgfm.text1 # Introduction to GFM
3 GitHub uses what we're calling "GitHub Flavored Markdown" (GFM) for messages, issues, and comments.…
18 …GFM introduces is in the handling of linebreaks. With SM you can hard wrap paragraphs of text and…
32 …ng with code and names often appear with multiple underscores. Therefore, GFM ignores multiple un…
43 GFM will autolink standard URLs, so if you want to link to a URL (instead of setting link text), yo…
47 Markdown converts text with four spaces at the front of each line to code blocks. GFM supports tha…
H A DGFM.md12 ~~ If there is a space in the beginning or end, it won't work as per the [GFM][GFM] docs ~~
77 Below are _not_ valid fenced code blocks according to the [GFM docs][GFM]. It says there must be a …
143 [GFM]: https://help.github.com/articles/github-flavored-markdown
/dports/biology/hisat2/hisat2-2.2.1/docs/_pages/
H A Dabout.md9 …GFM), an original approach and its first implementation. In addition to using one global GFM index…
/dports/textproc/py-marko/marko-1.1.0/marko/ext/gfm/
H A D__init__.py79 class GFM: class
93 gfm.use(GFM)
97 return GFM()
/dports/math/cantor/cantor-21.12.3/thirdparty/discount-2.2.6-patched/
H A Dmkd2html.c72 enum { GFM, ADD_CSS, ADD_HEADER, ADD_FOOTER }; enumerator
75 { GFM, "gfm",'G', 0, "Github style markdown" },
125 case GFM:
/dports/textproc/discount/discount-2.2.7/
H A Dmkd2html.c72 enum { GFM, ADD_CSS, ADD_HEADER, ADD_FOOTER }; enumerator
75 { GFM, "gfm",'G', 0, "Github style markdown" },
125 case GFM:
/dports/audio/snd/snd-21.2/tools/
H A Dsam.c425 #define FmSum7 g->GFM in process_gen()
2009 GFM = LDB(cmd, 7, 12); in gmode_command()
2016 old_GFM = g->GFM; in gmode_command()
2023 g->GFM = GFM; in gmode_command()
2042 fprintf(stderr, "inloc: %s[%d]", ((g->GFM >> 6) == 0) ? "gen-ins" : "mod-ins", g->GFM & 0x3f); in gmode_command()
2079 if (g->GFM != old_GFM) in gmode_command()
2082 gen, g->GFM, old_GFM, in gmode_command()
2556 …gens[i]->GFM, ((gens[i]->GFM >> 6) == 0) ? gen_ins[gens[i]->GFM & 0x3f] : mod_ins[gens[i]->GFM & 0…
2714 if ((g->GFM >> 6) == 0) in dump_patch()
2715 dump_gen_sum(g->GFM & 0x3f); in dump_patch()
[all …]
/dports/science/openbabel/openbabel-3.1.1/test/pdb_ligands_sdf/
H A D4gfo_0x2.sdf3 Coordinates from PDB:4GFM:A:1201 Model:1 without hydrogens
86 4GFM
/dports/sysutils/glow/glow-0.2.0/vendor/github.com/charmbracelet/glamour/ansi/
H A Drenderer_test.go55 extension.GFM,
125 extension.GFM,
/dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/catapult/third_party/polymer2/bower_components/marked/docs/
H A DUSING_ADVANCED.md45 |breaks |`boolean` |`false` |??? |If true, use GFM [hard](https://github.github.com/gfm/…
46 |gfm |`boolean` |`true` |??? |If true, use approved [GitHub Flavored Markdown (GFM) …
59 |tables |`boolean` |`true` |??? |If true and `gfm` is true, use [GFM Tables extension](…
/dports/devel/benchmark/benchmark-1.6.0/
H A D_config.yml2 markdown: GFM
/dports/devel/wasi-libcxx/llvm-project-13.0.1.src/libcxx/utils/google-benchmark/
H A D_config.yml2 markdown: GFM
/dports/devel/llvm-devel/llvm-project-f05c95f10fc1d8171071735af8ad3a9e87633120/libcxx/utils/google-benchmark/
H A D_config.yml2 markdown: GFM
/dports/devel/wasi-compiler-rt13/llvm-project-13.0.1.src/libcxx/utils/google-benchmark/
H A D_config.yml2 markdown: GFM
/dports/net/ipinfo-cli/cli-ipinfo-2.7.0/vendor/github.com/jszwec/csvutil/
H A D_config.yml2 markdown: GFM
/dports/net/ipinfo-cli/cli-ipinfo-2.7.0/vendor/github.com/jszwec/csvutil/csvutil-1.4.0/
H A D_config.yml2 markdown: GFM
/dports/security/palisade/palisade-release-d76213499af44558170cca6c72c5314755fec23c/third-party/google-benchmark/
H A D_config.yml2 markdown: GFM
/dports/devel/llvm13/llvm-project-13.0.1.src/libcxx/utils/google-benchmark/
H A D_config.yml2 markdown: GFM

12345678910>>...12