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/dports/science/libgridxc/libgridxc-libgridxc-0.9.6/Testers/Reference/
H A Dtest1.out27 GGA PW91 0 1 Ex 6.113748232 6.113748163 0.000000070 0
28 GGA PW91 0 1 Ec -0.091965078 -0.091965078 0.000000000 0
29 GGA PW91 1 1 Ex -0.000377944 -0.000377961 0.000000017 0
30 GGA PW91 1 1 Ec 0.002332720 0.002332720 0.000000000 0
31 GGA PW91 2 1 Ex -0.016023059 -0.016023059 0.000000000 0
32 GGA PW91 2 1 Ec 0.004528360 0.004528360 0.000000000 0
33 GGA PW91 3 1 Ex -0.012506357 -0.012506357 0.000000000 0
34 GGA PW91 3 1 Ec 0.004004828 0.004004828 0.000000000 0
35 GGA PW91 0 2 Ex -8.659113269 -8.659113206 0.000000063 0
36 GGA PW91 0 2 Ec -0.091932894 -0.091932894 0.000000000 0
[all …]
/dports/science/siesta/siesta-4.1.5/Src/SiestaXC/Testers/Reference/
H A Dtest1.out27 GGA PW91 0 1 Ex 6.113748232 6.113748163 0.000000070 0
28 GGA PW91 0 1 Ec -0.091965078 -0.091965078 0.000000000 0
29 GGA PW91 1 1 Ex -0.000377944 -0.000377961 0.000000017 0
30 GGA PW91 1 1 Ec 0.002332720 0.002332720 0.000000000 0
31 GGA PW91 2 1 Ex -0.016023059 -0.016023059 0.000000000 0
32 GGA PW91 2 1 Ec 0.004528360 0.004528360 0.000000000 0
33 GGA PW91 3 1 Ex -0.012506357 -0.012506357 0.000000000 0
34 GGA PW91 3 1 Ec 0.004004828 0.004004828 0.000000000 0
35 GGA PW91 0 2 Ex -8.659113269 -8.659113206 0.000000063 0
36 GGA PW91 0 2 Ec -0.091932894 -0.091932894 0.000000000 0
[all …]
/dports/biology/paml/paml4.9j/examples/lysozyme/
H A DlysozymeSmall.nuc4 AAG GTC TTT GAA AGG TGT GAG TTG GCC AGA ACT CTG AAA AGA TTG GGA ATG GAT GGC TAC
5 AGG GGA ATC AGC CTA GCA AAC TGG ATG TGT TTG GCC AAA TGG GAG AGT GGT TAC AAC ACA
6 CGA GCT ACA AAC TAC AAT GCT GGA GAC AGA AGC ACT GAT TAT GGG ATA TTT CAG ATC AAT
7 AGC CGC TAC TGG TGT AAT GAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT TTA TCC
10 GTC CGT CAG TAT GTT CAA GGT TGT GGA GTG
19 CTC CGT CAG TAT ATT CAA GGT TGT GGA GTA
28 GTC AGT CAG TAT GTT GAA GGT TGT GGA GTA
37 GTC AGT CAG TAC GTT AAA GGT TGT GGA GTG
46 GTC AGT CAG TAT GTT CAA GGT TGT GGA GTG
55 GTC AGT CAG TAT GTT CAA GGT TGT GGA GTA
[all …]
/dports/astro/opencpn/OpenCPN-5.2.4/plugins/demo_pi_sample/src/nmea0183/
H A Dgga.cpp46 GGA::GGA() in GGA() function in GGA
52 GGA::~GGA() in ~GGA()
58 void GGA::Empty( void ) in Empty()
73 bool GGA::Parse( const SENTENCE& sentence ) in Parse()
133 bool GGA::Write( SENTENCE& sentence ) in Write()
160 const GGA& GGA::operator = ( const GGA& source ) in operator =()
H A Dgga.hpp44 class GGA : public RESPONSE class
49 GGA();
50 ~GGA();
78 virtual const GGA& operator = ( const GGA& source );
/dports/astro/opencpn/OpenCPN-5.2.4/plugins/dashboard_pi/src/nmea0183/
H A Dgga.cpp46 GGA::GGA() in GGA() function in GGA
52 GGA::~GGA() in ~GGA()
58 void GGA::Empty( void ) in Empty()
73 bool GGA::Parse( const SENTENCE& sentence ) in Parse()
133 bool GGA::Write( SENTENCE& sentence ) in Write()
160 const GGA& GGA::operator = ( const GGA& source ) in operator =()
H A Dgga.hpp44 class GGA : public RESPONSE class
49 GGA();
50 ~GGA();
78 virtual const GGA& operator = ( const GGA& source );
/dports/astro/opencpn/OpenCPN-5.2.4/libs/nmea0183/src/
H A Dgga.cpp46 GGA::GGA() in GGA() function in GGA
52 GGA::~GGA() in ~GGA()
58 void GGA::Empty( void ) in Empty()
73 bool GGA::Parse( const SENTENCE& sentence ) in Parse()
133 bool GGA::Write( SENTENCE& sentence ) in Write()
160 const GGA& GGA::operator = ( const GGA& source ) in operator =()
H A Dgga.hpp44 class GGA : public RESPONSE class
49 GGA();
50 ~GGA();
78 virtual const GGA& operator = ( const GGA& source );
/dports/science/libgridxc/libgridxc-libgridxc-0.9.6/docs/pages/02_user_guide/02_api/
H A Dfunctionals.md5 wider selection of semi-local (LDA and GGA) functionals. Support for
19 ### GGA subsection
22 'PW91' => GGA Perdew & Wang, JCP, 100, 1290 (1994)
25 'revPBE' => GGA Zhang & Yang, PRL 80,890(1998)
26 'LYP' => GGA Becke-Lee-Yang-Parr (see subroutine blypxc)
27 'WC' => GGA Wu-Cohen (see subroutine wcxc)
28 'PBESOL' => GGA Perdew et al, PRL, 100, 136406 (2008)
32 'PBEGcGxLO' => GGA M.M.Odashima et al, JCTC 5, 798 (2009)
49 call setxc_family_authors('GGA', 'PBE')
57 call setXC( 2, (/'GGA','GGA'/), (/'PBE','WC'/), (/1.0_dp, 0.0_dp/), (/0.75_dp,0.25_dp/) )
[all …]
/dports/science/octopus/octopus-10.5/testsuite/functionals/
H A D02-xc_2d.test61 match ; GGA 2D B86 eigenvalue 1 up ; GREPFIELD(static/info, ' 1 up', 3) ; 0.758378
62 match ; GGA 2D B86 eigenvalue 2 up ; GREPFIELD(static/info, ' 2 up', 3) ; 0.934658
63 match ; GGA 2D B86 eigenvalue 1 dn ; GREPFIELD(static/info, ' 1 dn', 3) ; 1.169397
64 match ; GGA 2D B86 eigenvalue 2 dn ; GREPFIELD(static/info, ' 2 dn', 3) ; 1.224726
69 match ; GGA 2D B86 MGC eigenvalue 1 up ; GREPFIELD(static/info, ' 1 up', 3) ; 0.757507
70 match ; GGA 2D B86 MGC eigenvalue 2 up ; GREPFIELD(static/info, ' 2 up', 3) ; 0.932683
71 match ; GGA 2D B86 MGC eigenvalue 1 dn ; GREPFIELD(static/info, ' 1 dn', 3) ; 1.169397
72 match ; GGA 2D B86 MGC eigenvalue 2 dn ; GREPFIELD(static/info, ' 2 dn', 3) ; 1.224726
77 match ; GGA 2D B88 eigenvalue 1 up ; GREPFIELD(static/info, ' 1 up', 3) ; 0.751802
78 match ; GGA 2D B88 eigenvalue 2 up ; GREPFIELD(static/info, ' 2 up', 3) ; 0.922801
[all …]
/dports/biology/paml/paml4.9j/examples/MouseLemurs/
H A DMouseLemurs.nuc3 …GGA TTC CAA GAC GCA ACA TCC CCT ATT ATA GAA GAA CTC CTA CAC TTC CAC GAC CAC ACA CTA ATA ATC GTA TT…
4 …GGA TTT CAA GAT GCA ACA TCC CCT ATT ATA GAA GAA TTA CTC CAT TTC CAT GAC CAT ACA CTG ATA ATC GTA TT…
8 …GGA TTC CAA GAT GCA ACA TCA CCA ATC ATA GAA GAA CTA CTT CAC TTT CAT GAC CAC ACG CTA ATA ATT GTC TT…
9 …GGA TTA CAG GAC GCA ACC TCC CCT ATT ATA GAG GAG CTA CTT CAT TTT CAT GAC CAT ACA CTA ATA ATT GTA TT…
10 …GGA GAA CTG CGG TTA TTA GAA GTG GAC AAT CGA GTA GTA CTG CCC ATA GAA ATA ACG ATC CGT ATG CTA ATC TC…
11 …GGA CAT CAA TGA TAT TGA AGT TAT GAG TAC ACT GAT TAC GAA GAC TTG AAT TTT GAC TCT TAC ATA ATT CCT AC…
18 …GGA TTT CAA GAC GCT GCC TCC CCT ATT ATA GAA GAA TTA TTA TAC TTC CAT GAC CAC ACC CTT ATA ATC GTA TT…
19 …GGA TTT CAA GAC GCC GCC TCA CCT ATT ATA GAA GAA CTA CTA TAC TTT CAT GAC CAC ACT CTC ATA ATT GTA TT…
20 …GGA TTC CAA GAC GCC ACC TCC CCT ATC ATA GAA GAA CTT CTA TAT TTC CAT GAC CAT ACC TTA ATA ATT GTC TT…
22 …GGA TTT CAG GAT GCT GCT TCC CCC ATC ATG GAA GAG CTC TTA TAC TTT CAT GAT CAT ACT TTA ATA ATT GTA TT…
[all …]
/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/data/
H A Dcodeml45b.mlc3 …GGA TTC AAG GCT GGT GTT AAA GAT TAT AAA TTG ACT TAT TAT ACT CCT GAG TAT GAA ACC AAA GAT ACT GAT AT…
4 …GGA TTC AAG GCT GGT GTT AAA GAT TAT AAA TTG ACT TAT TAT ACT CCT GAG TAT GAA ACC AAA GAT ACT GAT AT…
5 …GGA TTC AAG GCT GGT GTT AAA GAT TAT AAA TTG ACT TAT TAT ACT CCT GAC TAT GAA ACC AAA GAT ACT GAT AT…
6 …GGA TTC AAG GCT GGT GTT AAA GAT TAT AAA TTG ACT TAT TAT ACT CCT GAC TAT GAA ACC AAA GAT ACT GAT AT…
7 …GGA TTC AAG GCT GGT GTT AAA GAT TAT AAA TTG ACT TAT TAT ACT CCT GAC TAT GAA ACC AAA GAT ACT GAT AT…
8 …GGA TTC AAG GCT GGT GTT AAA GAT TAT AAA TTG ACT TAT TAT ACT CCT GAC TAT GAA ACC AAA GAT ACT GAT AT…
9 …GGA TTC AAG GCT GGT GTT AAA GAT TAT AAA TTG ACT TAT TAT ACT CCT GAG TAT GAA ACC AAA GAT ACT GAT AT…
10 …GGA TTC AAG GCT GGT GTT AAA GAT TAT AAA TTG ACT TAT TAT ACT CCT GAC TAT GAA ACC AAA GAT ACT GAT AT…
61 …GTA 13 13 12 13 13 12 | GCA 15 15 16 16 16 16 | Glu GAA 24 24 25 24 24 25 | GGA 13 13 13 1…
83 GTA 13 13 13 | GCA 15 16 16 | Glu GAA 24 24 24 | GGA 13 13 13
[all …]
/dports/biology/py-biopython/biopython-1.79/Tests/PAML/Results/yn00/
H A Dyn00_dottednum-4_9i.out3 …GGA CCA TGC AAC AAT GTC AGC ACA GTA CAA TGT ACA CAT GGA ATT AAG CCA GTG GTA CCA ACT CAA CCA CTG TT…
4 …GGA CCA TGC AAC AAT GTC AGC ACA GTA CAA TGT ACA CAT GGA ATT AAG CCA GTG GTA CCA ACT CAA CCA CTG TT…
5 …GGA CCA TGC AAC AAT GTC AGC ACA GTA CAA TAT ACA CAT GGA ATT AAG CCA GTG GTA CCA ACT CAA CCA CTG TT…
6 …GGA CCA TGC AAC AAT GTC AGC ACA GTA CAA TGT ACA TAT GGA ATT AAG CCA GTA GTA TCA ACT CAA CCA CTG TT…
7 …GGA CCA TGC AAC AAT GTC AGC ACA GTA CAA TGT ACA CAT GGA ATT AAG CCA GTG GTA TCA ACT CAA CCA CTG TT…
8 …GGA CCA TGC AAC AAT GTC AGC ACA GTA CAA TGT ACA TAT GGA ATT AAG CCA GTA GTA TCA ACT CAA CCA CTG TT…
9 …GGA CCA TGC AAC AAT GTC AGC ACA GTA CAA TGT ACA TAT GGA ATT AAG CCA GTA GTA TCA ACT CAA CCA CTG TT…
18 …AA CAC CAG CAT CAT CCA CCA CCC CCT CTA CTG CTT GAA GAC GAG GCA GCA GCG GCT GGA GGC GGG GGT GTA GTC…
97 … | GCA 4 4 4 4 4 3 | Glu GAA 6 6 6 7 7 8 | GGA 7 7 7 7 7…
119 GTA 7 | GCA 5 | Glu GAA 7 | GGA 7
[all …]
H A Dyn00_long-4_8.out3 …GGA CCA TGC AAC AAT GTC AGC ACA GTA CAA TGT ACA CAT GGA ATT AAG CCA GTG GTA CCA ACT CAA CCA CTG TT…
4 …GGA CCA TGC AAC AAT GTC AGC ACA GTA CAA TGT ACA CAT GGA ATT AAG CCA GTG GTA CCA ACT CAA CCA CTG TT…
5 …GGA CCA TGC AAC AAT GTC AGC ACA GTA CAA TAT ACA CAT GGA ATT AAG CCA GTG GTA CCA ACT CAA CCA CTG TT…
6 …GGA CCA TGC AAC AAT GTC AGC ACA GTA CAA TGT ACA TAT GGA ATT AAG CCA GTA GTA TCA ACT CAA CCA CTG TT…
7 …GGA CCA TGC AAC AAT GTC AGC ACA GTA CAA TGT ACA CAT GGA ATT AAG CCA GTG GTA TCA ACT CAA CCA CTG TT…
8 …GGA CCA TGC AAC AAT GTC AGC ACA GTA CAA TGT ACA TAT GGA ATT AAG CCA GTA GTA TCA ACT CAA CCA CTG TT…
9 …GGA CCA TGC AAC AAT GTC AGC ACA GTA CAA TGT ACA TAT GGA ATT AAG CCA GTA GTA TCA ACT CAA CCA CTG TT…
18 …AA CAC CAG CAT CAT CCA CCA CCC CCT CTA CTG CTT GAA GAC GAG GCA GCA GCG GCT GGA GGC GGG GGT GTA GTC…
97 … | GCA 4 4 4 4 4 3 | Glu GAA 6 6 6 7 7 8 | GGA 7 7 7 7 7…
119 GTA 7 | GCA 5 | Glu GAA 7 | GGA 7
[all …]
/dports/science/quantum-espresso/q-e-qe-6.7.0/HP/examples/
H A DREADME61 from the GGA ground state. This example uses ultrasoft
62 pseudopotentials and the GGA-PBEsol functional.
68 pseudopotentials and the GGA-PBEsol functional. See also
74 from the GGA-sigma ground state. This example uses PAW
75 pseudopotentials and the GGA-PBEsol functional. See also
82 pseudopotential and the GGA-PBEsol functional.
87 from the GGA+U ground state, where U has a finite value.
89 the GGA-PBEsol functional.
109 and the GGA-PBEsol functional.
120 from the GGA ground state and using a non-uniform q-mesh.
[all …]
/dports/science/nwchem/nwchem-7b21660b82ebd85ef659f6fba7e1e73433b0bd0a/QA/tests/nwxc_nwdft_u1he/
H A Dnwxc_nwdft_u1he.nw34 # GGA exchange
43 # meta-GGA exchange
61 # Hartree-Fock exchange + GGA correlation
70 # Hartree-Fock exchange + meta-GGA correlation
79 # GGA exchange + GGA correlation
88 # GGA exchange-correlation
/dports/science/nwchem-data/nwchem-7.0.2-release/QA/tests/nwxc_nwdft_u1he/
H A Dnwxc_nwdft_u1he.nw34 # GGA exchange
43 # meta-GGA exchange
61 # Hartree-Fock exchange + GGA correlation
70 # Hartree-Fock exchange + meta-GGA correlation
79 # GGA exchange + GGA correlation
88 # GGA exchange-correlation
/dports/science/py-pymatgen/pymatgen-2022.0.15/pymatgen/io/vasp/
H A DvdW_parameters.yaml19 GGA: RE
23 GGA: OR
27 GGA: BO
33 GGA: MK
39 GGA: ML
/dports/biology/py-biopython/biopython-1.79/Tests/PAML/Alignments/
H A DlysinYangSwanson2002.nuc5 …GGA TTC GAT AGA GGG CTG GTC AAA TGG CTT AGA GTT CAT GGC AGA ACA TTG TCT ACC GTT CAG AAG AAG GCG CT…
6 …GGA TTC GAT AGA ACG CTG GTC AAA TGG CTT AGA ACT CAT GGC GGA ACA TTG TCT CAC GTT CAG AAG AAG GCG CT…
7 …GGA TTC GAT AGA ACG CTG GTC AAA TGG CTT AGA GCT CAT GGC AGA TCA TTG TCT CAC GTT CAG AAG AAG GCG CT…
8 …GGA CCA TTG TCT CAC GTT CAG AAG AAG GCG CTG TAC TTC GTC AAT AGA CGT TAC ATG CAG ACC CAC TGG GCG AA…
9 …GGA TTC GAC AGA ACG CTG GTC AAA TGG CTT AGA GTT CAT GGC AGA GGT TTG ACT CCA GTT CAG AAG AAG GCG CT…
10 …GGA TTC GAT AGA ACG CTG AAC AAA TGG CTT AGC GCT CAT GGC AGA GGT TTG ACT CCA GAT CAG AGG AAG GCG CT…
11 …GGA TTC GAT AGA ACG CTG AAC AAA TGG CTT AGC GCT CAT GGC AGA GGT TTG ACT CCA GAT CAG AGG AAG GCG CT…
12 …GGA TTC GAT AGA ACG CTG GTC AAA TGG CTT AGA GTT CAT GGC GGA CGT TTG AGT ACA GTT CAG AAG AAG GCG CT…
13 …GGA TTC GAC AGA ACG CTG GTC AAA TGG CTT AGA AAT CAT GGC AGA GGT TTG AAT GAA AAT CAG AGG AAG GTG CT…
14 …GGA TTC GAT AGA CAG CTG ACC GCA TGG CTC AGA GTT CAT GGC AGA CGT TTG ACT AAT AAT CAG AAG AAG ACG CT…
[all …]
/dports/biology/paml/paml4.9j/examples/lysin/
H A Dlysin.nuc2 …GGA TTC GAT AGA GGG CTG GTC AAA TGG CTT AGA GTT CAT GGC AGA ACA TTG TCT ACC GTT CAG AAG AAG GCG CT…
3 …GGA TTC GAT AGA ACG CTG GTC AAA TGG CTT AGA ACT CAT GGC GGA ACA TTG TCT CAC GTT CAG AAG AAG GCG CT…
4 …GGA TTC GAT AGA ACG CTG GTC AAA TGG CTT AGA GCT CAT GGC AGA TCA TTG TCT CAC GTT CAG AAG AAG GCG CT…
5 …GGA CCA TTG TCT CAC GTT CAG AAG AAG GCG CTG TAC TTC GTC AAT AGA CGT TAC ATG CAG ACC CAC TGG GCG AA…
6 …GGA TTC GAC AGA ACG CTG GTC AAA TGG CTT AGA GTT CAT GGC AGA GGT TTG ACT CCA GTT CAG AAG AAG GCG CT…
7 …GGA TTC GAT AGA ACG CTG AAC AAA TGG CTT AGC GCT CAT GGC AGA GGT TTG ACT CCA GAT CAG AGG AAG GCG CT…
8 …GGA TTC GAT AGA ACG CTG AAC AAA TGG CTT AGC GCT CAT GGC AGA GGT TTG ACT CCA GAT CAG AGG AAG GCG CT…
9 …GGA TTC GAT AGA ACG CTG GTC AAA TGG CTT AGA GTT CAT GGC GGA CGT TTG AGT ACA GTT CAG AAG AAG GCG CT…
10 …GGA TTC GAC AGA ACG CTG GTC AAA TGG CTT AGA AAT CAT GGC AGA GGT TTG AAT GAA AAT CAG AGG AAG GTG CT…
11 …GGA TTC GAT AGA CAG CTG ACC GCA TGG CTC AGA GTT CAT GGC AGA CGT TTG ACT AAT AAT CAG AAG AAG ACG CT…
[all …]
H A DlysinYangSwanson2002.nuc5 …GGA TTC GAT AGA GGG CTG GTC AAA TGG CTT AGA GTT CAT GGC AGA ACA TTG TCT ACC GTT CAG AAG AAG GCG CT…
6 …GGA TTC GAT AGA ACG CTG GTC AAA TGG CTT AGA ACT CAT GGC GGA ACA TTG TCT CAC GTT CAG AAG AAG GCG CT…
7 …GGA TTC GAT AGA ACG CTG GTC AAA TGG CTT AGA GCT CAT GGC AGA TCA TTG TCT CAC GTT CAG AAG AAG GCG CT…
8 …GGA CCA TTG TCT CAC GTT CAG AAG AAG GCG CTG TAC TTC GTC AAT AGA CGT TAC ATG CAG ACC CAC TGG GCG AA…
9 …GGA TTC GAC AGA ACG CTG GTC AAA TGG CTT AGA GTT CAT GGC AGA GGT TTG ACT CCA GTT CAG AAG AAG GCG CT…
10 …GGA TTC GAT AGA ACG CTG AAC AAA TGG CTT AGC GCT CAT GGC AGA GGT TTG ACT CCA GAT CAG AGG AAG GCG CT…
11 …GGA TTC GAT AGA ACG CTG AAC AAA TGG CTT AGC GCT CAT GGC AGA GGT TTG ACT CCA GAT CAG AGG AAG GCG CT…
12 …GGA TTC GAT AGA ACG CTG GTC AAA TGG CTT AGA GTT CAT GGC GGA CGT TTG AGT ACA GTT CAG AAG AAG GCG CT…
13 …GGA TTC GAC AGA ACG CTG GTC AAA TGG CTT AGA AAT CAT GGC AGA GGT TTG AAT GAA AAT CAG AGG AAG GTG CT…
14 …GGA TTC GAT AGA CAG CTG ACC GCA TGG CTC AGA GTT CAT GGC AGA CGT TTG ACT AAT AAT CAG AAG AAG ACG CT…
[all …]
/dports/biology/infernal/infernal-1.1.3/tutorial/
H A D5S_rRNA.sto342 M32519.1/4-118 ..CCUGGC.GU.C.C.AU.GGA....GG.A.G.G.G...GG.........
417 D90255.1/422-538 ..CCUGGU.GA.U.U.AU.GGA....GA.G.A.A.G...GC.........
2195 M16530.1/8-123 ..CGGACGGGA...GUACUGGGG..UCCGCGAG.G.CCCCG.GGA...A.
2199 L27163.1/1-119 U.CC..GGGGA...GUACUGGAG..UGCGCGAC.C.CUCUG.GGA...A.
2200 L27170.1/1-120 ..UC..CGGCAA..GUACUGGAG..UGCGCGAG.C.CUCUG.GGA...A.
2201 AF034619.1/5584-5700 U.CC..AGGGA...GUACUGGAG..UGCGCGAG.C.CUCUG.GGA...A.
2202 X03407.1/5927-6048 U.CC..GGUCA...GUACUGGAG..UGCGCGAG.C.CUCUG.GGA...A.
2203 L27343.1/3-116 A.CC..AGCUA...GUACUAGAG..UGGGAGAC.C.CUCUG.GGA...G.
2204 L27168.1/1-120 U.UC..GGUCA...GUACUGGAU..UGGGCGAC.C.CUCUG.GGA...A.
2205 X72588.1/6990-7093 ..UUCCAGCGA...GUACUGGAG..UGUGCGAA.C.CUCUG.GGA...A.
[all …]
/dports/biology/infernal/infernal-1.1.3/testsuite/
H A DrnaseP-eubact.sto18 …GGA----------------UAAUG------------------CCC--GGCGG-GG-----------------------------------GUGA----…
24 …GGA---AAGUGCC--ACAGAGAGUAU-ACCGCC----------------------------------GAUG--------------------------A…
133 …GGA--CGGAUCGUC-GCC---GCGG-G--G-----------------------GCAA------------------------C-UC-C-GGGGAGGAAA…
176 …GGA----------------UAACG------------------UCC--GGCGG-CU---UCG-----G-----------------------GAAA----…
195 …GGA---CAGUGCC--ACAGAGAACAGA-CCGCC------------------------------------UCC-----------------CGAAUCCAG…
263 …GGA----------------GAAAU------------------UCC--AGGGG-CC-----------------------------------GUAA----…
265 …GGA----------------GAAAU------------------UCC--AGGGG-CC-----------------------------------GUAA----…
269 …GGA---AAGUGUA--ACAGAAAACAA-ACCGCU------------------------------------AA--------------------------U…
278 …GGA----------------GAAAU------------------UCC--AGGGG-CC-----------------------------------GAGA----…
280 …GGA----------------GAAAU------------------UCC--AGGGG-CC-----------------------------------GUAA----…
[all …]
/dports/biology/py-biopython/biopython-1.79/Tests/PAML/Results/codeml/
H A Dtree_regexp_versatility.out5 …GGA GTC GCT ATT CCT GGC TCA CAC GTT CTT TAT GAA CCT CTG AAG GAT AAG CTA ACG CTT TTC TTA CCT GAT GT…
6 …GGA TTC CAT ATT ATA ACT GCT ATT GTT GTC ACC TCA TTG GTT TCG TTT GTT GCT TTG AAG AAG AGG AGT AGA AG…
7 …GGA TAC GAT CCA GTT TGT TGT GCC GGA CCA GCT TGT GGT ACT TTA CAT TAT GTT GAT AAT ACT AAA AAA ATT GA…
8 …GGA ATG CCA ATG GGT ATC AAT GAA GCT TTG AAC ACC TTT GAT GTC GAT GAA GTC CTA TAT GCT GAC AAA ATT AA…
17 …CC GCG GCG GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GGA GGA GGA GGA GGA GGA GGA GGA GGA GGC…
18 …GGA GGA GTC GTC GTC GTT GTT GTT GTT TCA TCA TCG TTA TTA TTC TTC TTG TTG TTT AAA AAA AAA AAG AAG AA…
19 …GGA GGA GGC GGT GGT GGT GGT ATT GGG AGA GGC GGG GGT GGT ATT GCT GGT GAT GGT GGA GGC GGC GGT GGT TC…
20 …GGA AAC AAG AGG AAG AAG CAG CGT AAT AAA TCA GGA GAA AAC CAT CAC CAT CTA AAT GAT TTA GTC ACA ACG TA…
82 GTA 9 5 4 5 | GCA 7 6 1 10 | Glu GAA 15 33 40 35 | GGA 9 4 4 10
131 GTA 23 | GCA 24 | Glu E GAA 123 | GGA 27

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