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/dports/biology/hyphy/hyphy-2.5.33/res/TemplateBatchFiles/libv3/models/DNA/
H A DGTR.bf7 /** @module models.DNA.GTR */
10 * @name models.DNA.GTR.ModelDescription
13 lfunction models.DNA.GTR.ModelDescription(type) {
39 * @name models.DNA.GTR._generateRate
44 * @returns models.DNA.GTR._generateRate.p
47 models.DNA.GTR._generateRate.p = {};
57 …models.DNA.GTR.parameter_name = parameters.ApplyNameSpace(models.DNA.GTR.parameter_name, namespace…
60 …(models.DNA.GTR._generateRate.p[model_type])[terms.nucleotideRate(fromChar, toChar)] = models.DNA.…
61 models.DNA.GTR._generateRate.p[terms.model.rate_entry] = models.DNA.GTR.parameter_name;
63 return models.DNA.GTR._generateRate.p;
[all …]
H A DGTR-MutSel.bf7 /** @module models.DNA.MS.GTR */
10 * @name models.DNA.MS.GTR.ModelDescription
12 lfunction models.DNA.MS.GTR.ModelDescription(ignored) {
29 utility.getGlobalValue("terms.model.q_ij"): "models.DNA.MS.GTR._generateRate",
31 utility.getGlobalValue("terms.model.defineQ"): "models.DNA.MS.GTR._defineQ",
37 * @name models.DNA.MS.GTR._generateRate
42 * @returns models.DNA.GTR.MS._generateRate.p
61 * @name models.DNA.GTR._defineQ
65 function models.DNA.MS.GTR._defineQ(gtr, namespace) {
78 * @name models.DNA.GTR._defineQ
[all …]
/dports/biology/hyphy/hyphy-2.5.33/tests/hbltests/libv3/
H A Drate-variation.bf18 LoadFunctionLibrary("libv3/models/DNA/GTR.bf");
50 "models.DNA.GTR.ModelDescription",
59 lfunction models.DNA.GTR.ModelDescription.withGamma (options) {
60 def = models.DNA.GTR.ModelDescription (options);
68 "models.DNA.GTR.ModelDescription.withGamma",
77 def = models.DNA.GTR.ModelDescription (options);
85 "models.DNA.GTR.ModelDescription.withGammaInv",
93 def = models.DNA.GTR.ModelDescription (options);
101 "models.DNA.GTR.ModelDescription.withGDD2",
109 def = models.DNA.GTR.ModelDescription (options);
[all …]
/dports/dns/dnscrypt-proxy2/dnscrypt-proxy-2.1.1/vendor/github.com/go-critic/go-critic/checkers/
H A DboolExprSimplify_checker.go126 case token.GTR:
129 cmp.Op = token.GTR
165 {token.GTR, token.EQL, token.GEQ},
166 {token.EQL, token.GTR, token.GEQ},
212 case token.GTR:
220 return replace(token.SUB, token.ADD, token.GTR)
284 {token.GTR, token.LSS, 2, 1},
288 {token.GTR, token.LEQ, 1, 1},
306 {token.LSS, token.GTR, 0, 0},
308 {token.LEQ, token.GTR, 1, 1},
H A DyodaStyleExpr_checker.go37 case token.EQL, token.NEQ, token.LSS, token.LEQ, token.GEQ, token.GTR:
54 expr.Op = token.GTR
57 case token.GTR:
/dports/multimedia/navidrome/navidrome-0.40.0/vendor/github.com/kunwardeep/paralleltest/tools/vendor/github.com/go-critic/go-critic/checkers/
H A DboolExprSimplify_checker.go126 case token.GTR:
129 cmp.Op = token.GTR
165 {token.GTR, token.EQL, token.GEQ},
166 {token.EQL, token.GTR, token.GEQ},
212 case token.GTR:
220 return replace(token.SUB, token.ADD, token.GTR)
284 {token.GTR, token.LSS, 2, 1},
288 {token.GTR, token.LEQ, 1, 1},
305 {token.LSS, token.GTR, 0, 0},
307 {token.LEQ, token.GTR, 1, 1},
H A DyodaStyleExpr_checker.go37 case token.EQL, token.NEQ, token.LSS, token.LEQ, token.GEQ, token.GTR:
54 expr.Op = token.GTR
57 case token.GTR:
/dports/multimedia/navidrome/navidrome-0.40.0/vendor/github.com/go-critic/go-critic/checkers/
H A DboolExprSimplify_checker.go126 case token.GTR:
129 cmp.Op = token.GTR
165 {token.GTR, token.EQL, token.GEQ},
166 {token.EQL, token.GTR, token.GEQ},
212 case token.GTR:
220 return replace(token.SUB, token.ADD, token.GTR)
284 {token.GTR, token.LSS, 2, 1},
288 {token.GTR, token.LEQ, 1, 1},
306 {token.LSS, token.GTR, 0, 0},
308 {token.LEQ, token.GTR, 1, 1},
H A DyodaStyleExpr_checker.go37 case token.EQL, token.NEQ, token.LSS, token.LEQ, token.GEQ, token.GTR:
54 expr.Op = token.GTR
57 case token.GTR:
/dports/sysutils/watchman/watchman-4.5.0/
H A Dmake.bat3 if %ERRORLEVEL% GTR 0 set need_setup=1
16 if %ERRORLEVEL% GTR 0 set PATH=c:\Python27;%PATH%
19 if %ERRORLEVEL% GTR 0 set PATH=c:\php;%PATH%
/dports/biology/hyphy/hyphy-2.5.33/res/TemplateBatchFiles/ProteinAnalyses/
H A DProteinGTRFit.bf134 io.ReportProgressMessageMD ("Protein GTR Fitter", "Initial branch length fit", "Initial branch leng…
154 io.ReportProgressMessageMD ("Protein GTR Fitter", " * Initial branch length fit",
158 io.ReportProgressMessageMD ("Protein GTR Fitter", " * Initial branch length fit",
173 io.ReportProgressMessageMD ("Protein GTR Fitter", " * Initial branch length fit",
181 Perform an initial GTR fit on the data
188 io.ReportProgressMessageMD ("Protein GTR Fitter", result_key,
198 /* Now that the initial GTR fit has been performed, we toggle between a GTR fit and a branch length…
222 io.ReportProgressMessageMD ("Protein GTR Fitter", result_key,
279 io.ReportProgressMessageMD ("Protein GTR Fitter", result_key,
/dports/biology/iqtree/IQ-TREE-2.0.6/example/
H A Dexample.nex8 charpartition mine = HKY:part1, GTR+G:part2, GTR+G: part3;
/dports/lang/cocor/cocor-1.7_3/taste/
H A Dtc.h28 #define GTR 6 macro
38 #define GTR 6 macro
/dports/science/py-libpysal/libpysal-4.5.1/libpysal/io/iohandlers/tests/
H A Dtest_geoda_txt.py3 from ..geoda_txt import GeoDaTxtReader as GTR unknown
10 self.obj = GTR(test_file, "r")
/dports/www/grafana8/grafana-8.3.6/vendor/cuelang.org/go/cue/token/
H A Dtoken.go67 GTR // > const
141 GTR: ">",
226 case EQL, NEQ, LSS, LEQ, GTR, GEQ, MAT, NMAT:
/dports/math/libxsmm/libxsmm-1.16.3/ide/
H A D_vs.bat16 IF %VS_VERSION% GTR 2008 (
36 IF %ICL_VERSION% GTR 12 (
49 IF %ICL_VERSION% GTR 12 (
/dports/sysutils/py-pywatchman/watchman-4.9.0/
H A Dmake.bat5 if %ERRORLEVEL% GTR 0 set need_setup=1
22 if %ERRORLEVEL% GTR 0 set PATH=c:\Python27;%PATH%
25 if %ERRORLEVEL% GTR 0 set PATH=c:\php;%PATH%
/dports/lang/cocor/cocor-1.7_3/taste_cp/
H A Dtc.hpp49 #define GTR 6 macro
59 #define GTR 6 macro
/dports/lang/intel-compute-runtime/compute-runtime-21.52.22081/scripts/
H A Ddriver-version.bat49 IF %d1% GTR %p1% GOTO PASS
52 IF %d2% GTR %p2% GOTO PASS
55 IF %d3% GTR %p3% GOTO PASS
/dports/devel/llvm70/llvm-7.0.1.src/tools/clang/test/CXX/dcl.decl/dcl.decomp/
H A Dp3.cpp171 template<typename ET, typename GTL, typename GTR>
172 struct std::tuple_size<wrap<ET, GTL, GTR>> {
175 template<typename ET, typename GTL, typename GTR>
176 struct std::tuple_element<0, wrap<ET, GTL, GTR>> {
/dports/lang/gcc6-aux/gcc-6-20180516/libgo/go/go/token/
H A Dtoken.go69 GTR // > const
173 GTR: ">",
265 case EQL, NEQ, LSS, LEQ, GTR, GEQ:
/dports/multimedia/libv4l/linux-5.13-rc2/Documentation/devicetree/bindings/phy/
H A Dxlnx,zynqmp-psgtr.yaml13 This binding describes the Xilinx ZynqMP Gigabit Transceiver (GTR) PHY. The
14 GTR provides four lanes and is used by USB, SATA, PCIE, Display port and
23 - description: The GTR lane
/dports/lang/gcc8/gcc-8.5.0/libgo/go/go/token/
H A Dtoken.go69 GTR // > const
173 GTR: ">",
265 case EQL, NEQ, LSS, LEQ, GTR, GEQ:
/dports/net/google-cloud-sdk-app-engine-go/platform/google_appengine/goroot-1.9/src/go/token/
H A Dtoken.go69 GTR // > const
173 GTR: ">",
265 case EQL, NEQ, LSS, LEQ, GTR, GEQ:
/dports/devel/riscv64-none-elf-gcc/gcc-8.4.0/libgo/go/go/token/
H A Dtoken.go69 GTR // > const
173 GTR: ">",
265 case EQL, NEQ, LSS, LEQ, GTR, GEQ:

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