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Searched refs:GTT (Results 1 – 25 of 990) sorted by relevance

12 3 4 5 6 7 8 9 10 >>...40

/dports/biology/py-biopython/biopython-1.79/Tests/PAML/Alignments/
H A D	lysinYangSwanson2002.nuc	5 …GTT GAA CCC AAG TTT TTA AAC AAG GCT TTT GAA GTT GCA CTG AAG GTA CAG ATC ATT GCT GGA TTC GAT AGA GG… 6 …GTT CCA CCC AAG TTT TTA AAC AAG GCT TTT GAA GTT GCA CTG AAG GTA CAG ATC ATT GCT GGA TTC GAT AGA AC… 8 …GTT CAA CCC AAG TTT TTA AAC AAG GCT TTT GAA GTT GCA CTG AAG GAA GAG ATC ATT GTT CGA TGG GAT AGA AA… 9 …GTT CAA CAT CAG TAT GTA GAC AAG GCT TTT GAA ATT GCA CTG AAG GAA GAG ATC GTT GCT GGA TTC GAC AGA AC… 12 …GTT GCA CTG AAG GTA GAG ATC ATT GCC GGA TTC GAT AGA ACG CTG GTC AAA TGG CTT AGA GTT CAT GGC GGA CG… 14 …GTT CGA TAT CAT TAT ATA AAC AAG GCT TAT GAA GTT ACA ATG AAG ATA CAG ATC ATT TCT GGA TTC GAT AGA CA… 15 …GTT GCC CAC AAA CAT GTT TCC AGG CCT TTT GAA GTT GCA CTG AAG GTC CAG ATC ATT GCT GGG TTT GAT AGA CA… 16 …GTT GCC AGG CAA TTT GAA GTT GCA CTG AAG GTC CAG ATC ATT GCT GGG TTT GAT AGA AAG TTG GTT AAC TGG CT… 17 …GTT CCC CAC ACA CAT GTT GCC AGG CCT TTT GAA GTT GCA CTG AAG GTC CAG ATC ATT GCT GGG TTT GAT AGA AA… 19 …GTT GCC CAC AGA CAT GTT TCC AGG CAA TTT GAA GTT GCA CTG AAG GTC CAG ATC ATG GCT GGG TTT GAT AAA AA… [all …]
/dports/biology/paml/paml4.9j/examples/lysin/
H A D	lysin.nuc	2 …GTT GAA CCC AAG TTT TTA AAC AAG GCT TTT GAA GTT GCA CTG AAG GTA CAG ATC ATT GCT GGA TTC GAT AGA GG… 3 …GTT CCA CCC AAG TTT TTA AAC AAG GCT TTT GAA GTT GCA CTG AAG GTA CAG ATC ATT GCT GGA TTC GAT AGA AC… 5 …GTT CAA CCC AAG TTT TTA AAC AAG GCT TTT GAA GTT GCA CTG AAG GAA GAG ATC ATT GTT CGA TGG GAT AGA AA… 6 …GTT CAA CAT CAG TAT GTA GAC AAG GCT TTT GAA ATT GCA CTG AAG GAA GAG ATC GTT GCT GGA TTC GAC AGA AC… 9 …GTT GCA CTG AAG GTA GAG ATC ATT GCC GGA TTC GAT AGA ACG CTG GTC AAA TGG CTT AGA GTT CAT GGC GGA CG… 11 …GTT CGA TAT CAT TAT ATA AAC AAG GCT TAT GAA GTT ACA ATG AAG ATA CAG ATC ATT TCT GGA TTC GAT AGA CA… 12 …GTT GCC CAC AAA CAT GTT TCC AGG CCT TTT GAA GTT GCA CTG AAG GTC CAG ATC ATT GCT GGG TTT GAT AGA CA… 13 …GTT GCC AGG CAA TTT GAA GTT GCA CTG AAG GTC CAG ATC ATT GCT GGG TTT GAT AGA AAG TTG GTT AAC TGG CT… 14 …GTT CCC CAC ACA CAT GTT GCC AGG CCT TTT GAA GTT GCA CTG AAG GTC CAG ATC ATT GCT GGG TTT GAT AGA AA… 16 …GTT GCC CAC AGA CAT GTT TCC AGG CAA TTT GAA GTT GCA CTG AAG GTC CAG ATC ATG GCT GGG TTT GAT AAA AA… [all …]
H A D	lysinYangSwanson2002.nuc	5 …GTT GAA CCC AAG TTT TTA AAC AAG GCT TTT GAA GTT GCA CTG AAG GTA CAG ATC ATT GCT GGA TTC GAT AGA GG… 6 …GTT CCA CCC AAG TTT TTA AAC AAG GCT TTT GAA GTT GCA CTG AAG GTA CAG ATC ATT GCT GGA TTC GAT AGA AC… 8 …GTT CAA CCC AAG TTT TTA AAC AAG GCT TTT GAA GTT GCA CTG AAG GAA GAG ATC ATT GTT CGA TGG GAT AGA AA… 9 …GTT CAA CAT CAG TAT GTA GAC AAG GCT TTT GAA ATT GCA CTG AAG GAA GAG ATC GTT GCT GGA TTC GAC AGA AC… 12 …GTT GCA CTG AAG GTA GAG ATC ATT GCC GGA TTC GAT AGA ACG CTG GTC AAA TGG CTT AGA GTT CAT GGC GGA CG… 14 …GTT CGA TAT CAT TAT ATA AAC AAG GCT TAT GAA GTT ACA ATG AAG ATA CAG ATC ATT TCT GGA TTC GAT AGA CA… 15 …GTT GCC CAC AAA CAT GTT TCC AGG CCT TTT GAA GTT GCA CTG AAG GTC CAG ATC ATT GCT GGG TTT GAT AGA CA… 16 …GTT GCC AGG CAA TTT GAA GTT GCA CTG AAG GTC CAG ATC ATT GCT GGG TTT GAT AGA AAG TTG GTT AAC TGG CT… 17 …GTT CCC CAC ACA CAT GTT GCC AGG CCT TTT GAA GTT GCA CTG AAG GTC CAG ATC ATT GCT GGG TTT GAT AGA AA… 19 …GTT GCC CAC AGA CAT GTT TCC AGG CAA TTT GAA GTT GCA CTG AAG GTC CAG ATC ATG GCT GGG TTT GAT AAA AA… [all …]
/dports/biology/py-biopython/biopython-1.79/Tests/PAML/Results/codeml/
H A D	tree_regexp_versatility.out	5 …GTT GCA TTT TTT GTT AGC GGT GAG GCA TTG GAA CTA TAT CAG TAC TGT GAT CAG ACG AAG CCC TTG CGA CAA AA… 6 …GTT GTC ACC TCA TTG GTT TCG TTT GTT GCT TTG AAG AAG AGG AGT AGA AGA GTC GAG --- ATA GAT ATC AAT CA… 7 …GTT AAA GAG ATT CCA GCC TCA ATC TTG GGT AAA AAA TAC CCT GCT AAG GAA CAT AAT CTT AGA GTT AAA AAT CT… 8 …GTT TTT ATC GCC ACA ATC CTA CTT CTA TTT GAT TAC ATT AGA AAG TAT AAT AGG AGG AAA GAA CCG ATA ACG AA… 17 …TA GTA GTA GTA GTC GTC GTC GTC GTC GTC GTC GTG GTG GTG GTG GTG GTT GTT GTT GTT GTT GTT GTT TAC TAC… 18 …GTT GTT GTT GTT TCA TCA TCG TTA TTA TTC TTC TTG TTG TTT AAA AAA AAA AAG AAG AAG AAT ACC ACT AGA AG… 19 …GTT GTT ACA ATC ATT ATT ATA ATC ATT ATT ATT GTT GTT GCC TTA ATG ATG ATT TTA GTT ACA GTT ATT ATT GT… 20 …GTT TAC AGA GAT --- AAA GCC ATC CTT GAT GTT ATC GTT CTA ATC TTG --- ACT ATT CTA TTT AAA AAG GTC AA… 80 Val GTT 7 24 17 20 \| Ala GCT 12 16 20 9 \| Asp GAT 18 43 27 31 \| Gly GGT 10 20 15 9 129 Val V GTT 68 \| Ala A GCT 57 \| Asp D GAT 119 \| Gly G GGT 54
/dports/math/moab/fathomteam-moab-7bde9dfb84a8/test/
H A D	gqt_simple_test.cpp	15 GeomTopoTool* GTT; variable 32 GQT = new GeomQueryTool(GTT); in gqt_load_file() 46 GTT = new GeomTopoTool(MBI); in gqt_load_file_dagmc_build_obb() 47 GQT = new GeomQueryTool(GTT); in gqt_load_file_dagmc_build_obb() 62 GTT = new GeomTopoTool(MBI); in gqt_load_file_dagmc_via_moab_build_obb() 63 GQT = new GeomQueryTool(GTT); in gqt_load_file_dagmc_via_moab_build_obb() 82 GQT = new GeomQueryTool(GTT); in gqt_load_file_dagmc_internal_build_obb() 100 GQT = new GeomQueryTool(GTT); in gqt_test_obb_retreval() 110 delete GTT; in gqt_test_obb_retreval() 193 delete GTT; in gqt_test_obb_retreval_rayfire() [all …]
H A D	restore_topo_geom_incl_test.cpp	19 bool check_tree ( Interface mbi, GeomTopoTool GTT, std::map< int, std::set<int> > &ref_map ); 35 GeomTopoTool GTT = new GeomTopoTool(mbi); in build_cube() local 146 rval = GTT->set_sense(surf, volume, SENSE_FORWARD); MB_CHK_ERR(rval); in build_cube() 148 delete GTT; in build_cube() 202 bool check_tree ( Interface mbi, GeomTopoTool GTT, std::map< int, std::set<int> > &ref_map ) in check_tree() argument 209 rval = GTT->get_gsets_by_dimension(3, vols); in check_tree() 437 GeomTopoTool GTT = new GeomTopoTool(mbi); in heappermute() local 439 rval = GTT->construct_obb_trees(); in heappermute() 441 rval = GTT->restore_topology_from_geometric_inclusion(flat_vols); in heappermute() 445 bool result = check_tree(mbi, GTT, ref_map ); in heappermute() [all …]
/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/data/
H A D	codeml45b.mlc	3 …GTT GGA TTC AAG GCT GGT GTT AAA GAT TAT AAA TTG ACT TAT TAT ACT CCT GAG TAT GAA ACC AAA GAT ACT GA… 4 …GTT GGA TTC AAG GCT GGT GTT AAA GAT TAT AAA TTG ACT TAT TAT ACT CCT GAG TAT GAA ACC AAA GAT ACT GA… 5 …GTT GGA TTC AAG GCT GGT GTT AAA GAT TAT AAA TTG ACT TAT TAT ACT CCT GAC TAT GAA ACC AAA GAT ACT GA… 6 …GTT GGA TTC AAG GCT GGT GTT AAA GAT TAT AAA TTG ACT TAT TAT ACT CCT GAC TAT GAA ACC AAA GAT ACT GA… 7 …GTT GGA TTC AAG GCT GGT GTT AAA GAT TAT AAA TTG ACT TAT TAT ACT CCT GAC TAT GAA ACC AAA GAT ACT GA… 9 …GTT GGA TTC AAG GCT GGT GTT AAA GAT TAT AAA TTG ACT TAT TAT ACT CCT GAG TAT GAA ACC AAA GAT ACT GA… 10 …GTT GGA TTC AAG GCT GGT GTT AAA GAT TAT AAA TTG ACT TAT TAT ACT CCT GAC TAT GAA ACC AAA GAT ACT GA… 11 …GTT GGA TTC AAG GCT GGT GTT AAA GAT TAT AAA TTG ACT TAT TAT ACT CCT GAC TAT GAA ACC AAA GAT ACT GA… 20 …AA GAC GAG GAG GAT GCA GCC GCC GCT GCT GGA GGC GGG GGT GTA GTA GTC GTG GTT GTT GTT TAC TAT TCA TCC… 81 Val GTT 15 15 15 \| Ala GCT 24 24 24 \| Asp GAT 22 22 22 \| Gly GGT 23 23 23 [all …]
H A D	yeast.tRNAscanSE	`66 V 8 438696 438769 Val GTT 0 0 68.42 67 V 9 469452 469525 Val GTT 0 0 68.42 106 VII 18 823484 823557 Val GTT 0 0 68.42 119 VII 31 412368 412295 Val GTT 0 0 68.42 124 VII 36 73900 73827 Val GTT 0 0 68.42 135 VIII 11 85366 85293 Val GTT 0 0 68.42 151 X 6 378056 378129 Val GTT 0 0 68.42 175 XI 6 379318 379391 Val GTT 0 0 68.42 182 XI 13 307858 307785 Val GTT 0 0 68.42 200 XII 15 687932 687859 Val GTT 0 0 68.42 [all …]`
/dports/biology/paml/paml4.9j/examples/lysozyme/
H A D	lysozymeSmall.nuc	7 AGC CGC TAC TGG TGT AAT GAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT TTA TCC 8 TGC AGT GCT TTG CTG CAA GAT AAC ATC GCT GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC 10 GTC CGT CAG TAT GTT CAA GGT TGT GGA GTG 16 AGC CGC TAC TGG TGT AAT GAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT TTA TCC 17 TGC AAT GCT TTG CTG CAA GAT AAC ATC GCC GAT GCT GTA GCT TGT GCA AAG AGG GTT GTC 25 AGC CGC TAC TGG TGT AAT AAT GGC AAA ACC CCA GGA GCA GTT AAT GCC TGT CAT ATA TCC 28 GTC AGT CAG TAT GTT GAA GGT TGT GGA GTA 37 GTC AGT CAG TAC GTT AAA GGT TGT GGA GTG 46 GTC AGT CAG TAT GTT CAA GGT TGT GGA GTG 55 GTC AGT CAG TAT GTT CAA GGT TGT GGA GTA [all …]
/dports/biology/bcftools/bcftools-1.14/test/
H A D	query.out	`3 1 3062915 GTT G 1,2,3,4 4 0/1 GTT/G 0/1 GTT/G 10 2 3199812 G GTT,GT . 4 1/2 GTT/GT 1/2 GTT/GT`
/dports/biology/bio-mocha/bcftools-1.14/test/
H A D	query.out	`3 1 3062915 GTT G 1,2,3,4 4 0/1 GTT/G 0/1 GTT/G 10 2 3199812 G GTT,GT . 4 1/2 GTT/GT 1/2 GTT/GT`
/dports/lang/ghc/ghc-8.10.7/compiler/nativeGen/X86/
H A D	Cond.hs	`19 \| GTT -- jg constructor 43 condToSigned GU = GTT 51 condToUnsigned GTT = GU function 67 LTT -> Just GTT 68 GTT -> Just LTT 96 GTT -> Just LE 97 LE -> Just GTT`
/dports/biology/wise/wise2.4.1/wisecfg/
H A D	worm.gf	`55 AA-GTA-GTT 6.5 82 --GGTT-GTT 2.42857 83 -A-GTA-GTT 2.42424 88 A--GTA-GTT 1.9697 96 T--GTA-GTT 1.63636 121 -A-GT--GTT 0.525 290 --AGTA-GTT 0.6875 347 -G-GTA-GTT 0.7 636 GTT 37436.000000 704 GTT 20526.000000 [all …]`
/dports/net-mgmt/netdisco-mibs/netdisco-mibs-4.010/cisco/
H A D	CISCO-ITP-SCCP-MIB.my	`271 "The list of SCCP GTT Result Type 289 "The SCCP GTT Routing Indicator 745 GTT Selector Table." 759 GTT Global Title Address Table." 773 GTT Application Group Table." 802 GTT Prefix Conversion Table." 969 "The GTT MAP subsystem type." 985 "The GTT MAP subsystem status." 1220 this GTT Selector." 2094 "SCCP GTT Selector objects." [all …]`
/dports/net-mgmt/observium/observium/mibs/cisco/
H A D	CISCO-ITP-SCCP-MIB	`271 "The list of SCCP GTT Result Type 289 "The SCCP GTT Routing Indicator 745 GTT Selector Table." 759 GTT Global Title Address Table." 773 GTT Application Group Table." 802 GTT Prefix Conversion Table." 969 "The GTT MAP subsystem type." 985 "The GTT MAP subsystem status." 1220 this GTT Selector." 2094 "SCCP GTT Selector objects." [all …]`
/dports/lang/ghc/ghc-8.10.7/compiler/nativeGen/PPC/
H A D	Cond.hs	`20 \| GTT constructor 35 condNegate GTT = LE function 37 condNegate LE = GTT 52 condToSigned GU = GTT 59 condToUnsigned GTT = GU function`
/dports/biology/py-biopython/biopython-1.79/Tests/PAML/Results/yn00/
H A D	yn00-4_4.out	3 … GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG ACA CTG GAA AGA ATG CTA GTT TCC AAA TGT T… 4 … GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG ACA CTG GAA AGA ATG CTA GTT TCC AAA TGC T… 5 … GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG ACA CTG GAA AGA ATG CTA GTT TCC AAA TGT T… 6 … GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG ACA CTG GAA AGA ATG CTA GTT TCC AAA TGT T… 7 … ATG CCA GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA… 16 …TC ATG ATT CAG CCA CCC CGA CTA CTC CTG GAA GAC GAG GAT GGA GGC GTA GTG GTT GTT GTT TAC TCA TCC TCT… 79 Val GTT 3 3 3 3 1 \| Ala GCT 0 0 0 0 0 \| Asp GAT 2 2 2 2 2 \| Gly GGT 0 0 0 0 0 103 Val GTT 13 \| Ala GCT 0 \| Asp GAT 10 \| Gly GGT 0
H A D	yn00-4_4c.out	3 … GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG ACA CTG GAA AGA ATG CTA GTT TCC AAA TGT T… 4 … GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG ACA CTG GAA AGA ATG CTA GTT TCC AAA TGC T… 5 … GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG ACA CTG GAA AGA ATG CTA GTT TCC AAA TGT T… 6 … GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG ACA CTG GAA AGA ATG CTA GTT TCC AAA TGT T… 7 … ATG CCA GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA… 16 …TC ATG ATT CAG CCA CCC CGA CTA CTC CTG GAA GAC GAG GAT GGA GGC GTA GTG GTT GTT GTT TAC TCA TCC TCT… 79 Val GTT 3 3 3 3 1 \| Ala GCT 0 0 0 0 0 \| Asp GAT 2 2 2 2 2 \| Gly GGT 0 0 0 0 0 103 Val GTT 13 \| Ala GCT 0 \| Asp GAT 10 \| Gly GGT 0
H A D	yn00-4_5.out	3 … GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG ACA CTG GAA AGA ATG CTA GTT TCC AAA TGT T… 4 … GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG ACA CTG GAA AGA ATG CTA GTT TCC AAA TGC T… 5 … GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG ACA CTG GAA AGA ATG CTA GTT TCC AAA TGT T… 6 … GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG ACA CTG GAA AGA ATG CTA GTT TCC AAA TGT T… 7 Macaca_mul ATG CCA GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CT… 16 …TC ATG ATT CAG CCA CCC CGA CTA CTC CTG GAA GAC GAG GAT GGA GGC GTA GTG GTT GTT GTT TAC TCA TCC TCT… 79 Val GTT 3 3 3 3 1 \| Ala GCT 0 0 0 0 0 \| Asp GAT 2 2 2 2 2 \| Gly GGT 0 0 0 0 0 103 Val GTT 13 \| Ala GCT 0 \| Asp GAT 10 \| Gly GGT 0
H A D	yn00-4_6.out	3 … GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG ACA CTG GAA AGA ATG CTA GTT TCC AAA TGT T… 4 … GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG ACA CTG GAA AGA ATG CTA GTT TCC AAA TGC T… 5 … GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG ACA CTG GAA AGA ATG CTA GTT TCC AAA TGT T… 6 … GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG ACA CTG GAA AGA ATG CTA GTT TCC AAA TGT T… 7 … ATG CCA GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA… 16 …TC ATG ATT CAG CCA CCC CGA CTA CTC CTG GAA GAC GAG GAT GGA GGC GTA GTG GTT GTT GTT TAC TCA TCC TCT… 79 Val GTT 3 3 3 3 1 \| Ala GCT 0 0 0 0 0 \| Asp GAT 2 2 2 2 2 \| Gly GGT 0 0 0 0 0 103 Val GTT 13 \| Ala GCT 0 \| Asp GAT 10 \| Gly GGT 0
H A D	yn00-4_7.out	3 … GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG ACA CTG GAA AGA ATG CTA GTT TCC AAA TGT T… 4 … GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG ACA CTG GAA AGA ATG CTA GTT TCC AAA TGC T… 5 … GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG ACA CTG GAA AGA ATG CTA GTT TCC AAA TGT T… 6 … GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG ACA CTG GAA AGA ATG CTA GTT TCC AAA TGT T… 7 … ATG CCA GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA… 16 …TC ATG ATT CAG CCA CCC CGA CTA CTC CTG GAA GAC GAG GAT GGA GGC GTA GTG GTT GTT GTT TAC TCA TCC TCT… 79 Val GTT 3 3 3 3 1 \| Ala GCT 0 0 0 0 0 \| Asp GAT 2 2 2 2 2 \| Gly GGT 0 0 0 0 0 103 Val GTT 13 \| Ala GCT 0 \| Asp GAT 10 \| Gly GGT 0
H A D	yn00-4_8.out	3 … GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG ACA CTG GAA AGA ATG CTA GTT TCC AAA TGT T… 4 … GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG ACA CTG GAA AGA ATG CTA GTT TCC AAA TGC T… 5 … GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG ACA CTG GAA AGA ATG CTA GTT TCC AAA TGT T… 6 … GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG ACA CTG GAA AGA ATG CTA GTT TCC AAA TGT T… 7 … ATG CCA GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA… 16 …TC ATG ATT CAG CCA CCC CGA CTA CTC CTG GAA GAC GAG GAT GGA GGC GTA GTG GTT GTT GTT TAC TCA TCC TCT… 79 Val GTT 3 3 3 3 1 \| Ala GCT 0 0 0 0 0 \| Asp GAT 2 2 2 2 2 \| Gly GGT … 103 Val GTT 13 \| Ala GCT 0 \| Asp GAT 10 \| Gly GGT 0
H A D	yn00_dotted-4_9i.out	3 … GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG ACA CTG GAA AGA ATG CTA GTT TCC AAA TGT T… 4 … GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG ACA CTG GAA AGA ATG CTA GTT TCC AAA TGC T… 5 … GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG ACA CTG GAA AGA ATG CTA GTT TCC AAA TGT T… 6 … GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA GAA GTG ACA CTG GAA AGA ATG CTA GTT TCC AAA TGT T… 7 … ATG CCA GTA ATC AAT ATT GAG GAC CTG ACA GAA AAG GAC AAA TTG AAG ATG GAA GTT GAC CAG CTC AAG AAA… 16 …TC ATG ATT CAG CCA CCC CGA CTA CTC CTG GAA GAC GAG GAT GGA GGC GTA GTG GTT GTT GTT TAC TCA TCC TCT… 79 Val GTT 3 3 3 3 1 \| Ala GCT 0 0 0 0 0 \| Asp GAT 2 2 2 2 2 \| Gly GGT … 103 Val GTT 13 \| Ala GCT 0 \| Asp GAT 10 \| Gly GGT 0
/dports/biology/py-ete3/ete3-3.1.2/ete3/test/ete_evol_data/S_example/paml/fb/
H A D	rst	28 …C(0.000) AAA(0.000) AAG(0.000) AGT(0.000) AGC(0.000) AGA(0.000) AGG(0.000) GTT(0.000) GTC(0.000) G… 29 …C(0.000) AAA(0.000) AAG(0.000) AGT(0.000) AGC(0.000) AGA(0.000) AGG(0.000) GTT(0.000) GTC(0.000) G… 30 …C(0.000) AAA(0.000) AAG(0.000) AGT(0.000) AGC(0.000) AGA(0.000) AGG(1.000) GTT(0.000) GTC(0.000) G… 31 …C(0.000) AAA(0.000) AAG(0.000) AGT(0.000) AGC(0.000) AGA(0.000) AGG(0.000) GTT(0.000) GTC(0.000) G… 32 …C(0.000) AAA(0.000) AAG(0.000) AGT(0.000) AGC(0.000) AGA(1.000) AGG(0.000) GTT(0.000) GTC(0.000) G… 33 …C(0.000) AAA(0.000) AAG(0.000) AGT(0.000) AGC(0.000) AGA(0.000) AGG(0.000) GTT(0.000) GTC(0.000) G… 34 …C(0.000) AAA(0.000) AAG(0.000) AGT(0.000) AGC(0.000) AGA(0.000) AGG(0.000) GTT(0.000) GTC(0.000) G… 35 …C(0.000) AAA(0.000) AAG(0.000) AGT(0.000) AGC(0.000) AGA(0.000) AGG(0.000) GTT(0.000) GTC(0.000) G… 36 …C(0.000) AAA(0.000) AAG(0.000) AGT(0.000) AGC(1.000) AGA(0.000) AGG(0.000) GTT(0.000) GTC(0.000) G… 37 …C(0.000) AAA(0.000) AAG(0.000) AGT(0.000) AGC(0.000) AGA(0.000) AGG(0.000) GTT(0.000) GTC(0.000) G… [all …]
/dports/biology/py-ete3/ete3-3.1.2/examples/evol/data/S_example/paml/fb/
H A D	rst	28 …C(0.000) AAA(0.000) AAG(0.000) AGT(0.000) AGC(0.000) AGA(0.000) AGG(0.000) GTT(0.000) GTC(0.000) G… 29 …C(0.000) AAA(0.000) AAG(0.000) AGT(0.000) AGC(0.000) AGA(0.000) AGG(0.000) GTT(0.000) GTC(0.000) G… 30 …C(0.000) AAA(0.000) AAG(0.000) AGT(0.000) AGC(0.000) AGA(0.000) AGG(1.000) GTT(0.000) GTC(0.000) G… 31 …C(0.000) AAA(0.000) AAG(0.000) AGT(0.000) AGC(0.000) AGA(0.000) AGG(0.000) GTT(0.000) GTC(0.000) G… 32 …C(0.000) AAA(0.000) AAG(0.000) AGT(0.000) AGC(0.000) AGA(1.000) AGG(0.000) GTT(0.000) GTC(0.000) G… 33 …C(0.000) AAA(0.000) AAG(0.000) AGT(0.000) AGC(0.000) AGA(0.000) AGG(0.000) GTT(0.000) GTC(0.000) G… 34 …C(0.000) AAA(0.000) AAG(0.000) AGT(0.000) AGC(0.000) AGA(0.000) AGG(0.000) GTT(0.000) GTC(0.000) G… 35 …C(0.000) AAA(0.000) AAG(0.000) AGT(0.000) AGC(0.000) AGA(0.000) AGG(0.000) GTT(0.000) GTC(0.000) G… 36 …C(0.000) AAA(0.000) AAG(0.000) AGT(0.000) AGC(1.000) AGA(0.000) AGG(0.000) GTT(0.000) GTC(0.000) G… 37 …C(0.000) AAA(0.000) AAG(0.000) AGT(0.000) AGC(0.000) AGA(0.000) AGG(0.000) GTT(0.000) GTC(0.000) G… [all …]

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