| /dports/biology/mafft/mafft-7.267-without-extensions/core/ |
| H A D | mltaln.h | 171 extern double G__align11();
|
| H A D | pairlocalalign.c | 262 value = G__align11( n_dis_consweight_multi, mseq1, mseq2, alloclen, outgap, outgap ); in recallpairfoldalign()
2003 G__align11( NULL, NULL, NULL, 0, 0, 0 ); // 20130603 in athread()
2163 G__align11( n_dis_consweight_multi, mseq1, mseq2, alloclen, outgap, outgap ); in athread()
2170 pscore = G__align11( n_dis_consweight_multi, mseq1, mseq2, alloclen, outgap, outgap ); in athread()
2182 G__align11( dynamicmtx, mseq1, mseq2, alloclen, outgap, outgap ); in athread()
2612 G__align11( n_dis_consweight_multi, mseq1, mseq2, alloclen, outgap, outgap ); in pairalign()
2619 pscore = G__align11( n_dis_consweight_multi, mseq1, mseq2, alloclen, outgap, outgap ); in pairalign()
2631 G__align11( dynamicmtx, mseq1, mseq2, alloclen, outgap, outgap ); in pairalign()
|
| H A D | disttbfast.c | 965 G__align11( NULL, NULL, NULL, 0, 0, 0 ); // iru? in treebasethread()
1173 pscore = G__align11( dynamicmtx, mseq1, mseq2, *alloclen, outgap, outgap ); in treebasethread()
1185 pscore = G__align11( dynamicmtx, mseq1, mseq2, *alloclen, outgap, outgap ); in treebasethread()
1565 pscore = G__align11( dynamicmtx, mseq1, mseq2, *alloclen, outgap, outgap ); in treebase()
1577 pscore = G__align11( dynamicmtx, mseq1, mseq2, *alloclen, outgap, outgap ); in treebase()
1730 G__align11( NULL, NULL, NULL, 0, 0, 0 ); // iru? in treebase()
1749 G__align11( NULL, NULL, NULL, 0, 0, 0 ); // iru? in treebase()
|
| H A D | makedirectionlist.c | 524 res_forward = G__align11( n_dis_consweight_multi, mseq1f, mseq2, nlenmax*2, 0, 0 ); in main()
530 res_reverse = G__align11( n_dis_consweight_multi, mseq1r, mseq2, nlenmax*2, 0, 0 ); in main()
|
| H A D | Falign.c | 715 G__align11( n_dynamicmtx, tmpres1, tmpres2, alloclen, headgp, tailgp ); in Fgetlag()
832 G__align11( NULL, NULL, NULL, 0, 0, 0 ); in Falign()
1523 totalscore += G__align11( n_dynamicmtx, tmpres1, tmpres2, alloclen, headgp, tailgp ); in Falign()
1538 totalscore += G__align11( n_dynamicmtx, tmpres1, tmpres2, alloclen, headgp, tailgp ); in Falign()
1684 G__align11( NULL, NULL, NULL, 0, 0, 0 ); in Falign_udpari_long()
|
| H A D | Galign11.c | 165 double G__align11( double **n_dynamicmtx, char **seq1, char **seq2, int alloclen, int headgp, int t… in G__align11() function
|
| H A D | Falign_localhom.c | 229 G__align11( NULL, NULL, NULL, 0, 0, 0 ); in Falign_localhom()
|
| H A D | functions.h | 154 extern double G__align11( double **scoringmtx, char **seq1, char **seq2, int alloclen, int headgp, …
|
| H A D | splittbfast.c | 1045 pscore = G__align11( n_dis_consweight_multi, mseq1, mseq2, *alloclen, outgap, outgap ); in pairalign()
|