Home
last modified time | relevance | path

Searched refs:GetColCount (Results 1 – 25 of 343) sorted by relevance

12345678910>>...14

/dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/umuscle/src/muscle/
H A Dmsf.cpp39 const unsigned uColCount = GetColCount(); in GetGCGCheckSum()
52 const int ColCount = a.GetColCount(); in MSFFixGaps()
77 GetColCount(), seqtype); in ToMSFFile()
95 GetColCount(), GetGCGCheckSum(uSeqIndex), GetSeqWeight(uSeqIndex)); in ToMSFFile()
98 if (0 == GetColCount()) in ToMSFFile()
101 unsigned uLineCount = (GetColCount() - 1)/uCharsPerLine + 1; in ToMSFFile()
107 if (uEndColIndex >= GetColCount()) in ToMSFFile()
108 uEndColIndex = GetColCount() - 1; in ToMSFFile()
H A Dprogalign.cpp67 Node.m_uLength = Node.m_MSA.GetColCount(); in ProgressiveAlignE()
135 unsigned uLength = Parent.m_MSA.GetColCount(); in ProgressiveAlignE()
143 ListProfile(Node1.m_Prof, Node1.m_MSA.GetColCount(), &Node1.m_MSA); in ProgressiveAlignE()
145 ListProfile(P1, Node1.m_MSA.GetColCount(), &Node1.m_MSA); in ProgressiveAlignE()
147 AssertProfsEq(Node1.m_Prof, Node1.m_uLength, P1, Node1.m_MSA.GetColCount()); in ProgressiveAlignE()
150 ListProfile(Node2.m_Prof, Node2.m_MSA.GetColCount(), &Node2.m_MSA); in ProgressiveAlignE()
156 ListProfile(P2, Node2.m_MSA.GetColCount(), &Node2.m_MSA); in ProgressiveAlignE()
158 AssertProfsEq(Node2.m_Prof, Node2.m_uLength, P2, Node2.m_MSA.GetColCount()); in ProgressiveAlignE()
169 ListProfile(TmpProf, Parent.m_MSA.GetColCount(), &Parent.m_MSA); in ProgressiveAlignE()
173 TmpProf, Parent.m_MSA.GetColCount()); in ProgressiveAlignE()
H A Dobjscore2.cpp50 const unsigned uColCount = msa1.GetColCount(); in ScoreSeqPairLetters()
51 const unsigned uColCount2 = msa2.GetColCount(); in ScoreSeqPairLetters()
125 const unsigned uColCount = msa1.GetColCount(); in ScoreSeqPairGaps()
126 const unsigned uColCount2 = msa2.GetColCount(); in ScoreSeqPairGaps()
253 const unsigned uColCount = msa.GetColCount(); in ObjScoreSP()
319 const unsigned uColCount = msa1.GetColCount(); in ObjScoreDP()
320 if (msa2.GetColCount() != uColCount) in ObjScoreDP()
323 const unsigned uColCount1 = msa1.GetColCount(); in ObjScoreDP()
433 const unsigned uColCount = msa.GetColCount(); in ObjScorePS()
490 const unsigned uColCount1 = msa1.GetColCount(); in ObjScoreXP()
[all …]
H A Dmsa.cpp102 if (0 == GetColCount()) in LogMe()
114 unsigned iEnd = GetColCount(); in LogMe()
125 Log(" %-10u", GetColCount()); in LogMe()
292 for (unsigned n = 0; n < GetColCount(); ++n) in HasGap()
311 assert(uFromCol < GetColCount()); in CopyCol()
312 assert(uToCol < GetColCount()); in CopyCol()
478 assert(uColIndex < GetColCount()); in GetCharCount()
587 const unsigned uColCount = GetColCount(); in GetSeqLength()
603 const unsigned uColCount = GetColCount(); in GetPWID()
633 assert(uColIndex < GetColCount()); in UniqueResidueTypes()
[all …]
H A Dmsa2.cpp28 const unsigned uColCount = GetColCount(); in GetFractionalWeightedCounts()
166 if (uColIndex > 0 && uColIndex < GetColCount() - 1) in GetFractionalWeightedCounts()
187 const unsigned uSeqCount = msa.GetColCount(); in MSAColIsConservative()
212 const unsigned uColCount = msaIn.GetColCount(); in MSAFromSeqRange()
232 const unsigned uInColCount = msaIn.GetColCount(); in MSAFromColRange()
279 if (uColIndex >= msa.GetColCount()) in DeleteGappedCols()
291 const unsigned uColCount = msaIn.GetColCount(); in MSAFromSeqSubset()
505 const unsigned uColCount1 = msa1.GetColCount(); in MSAAppend()
506 const unsigned uColCount2 = msa2.GetColCount(); in MSAAppend()
529 const unsigned uColCount1 = msa1.GetColCount(); in MSACat()
[all …]
H A Dhtml.cpp16 const unsigned uColCount = a.GetColCount(); in MakeColors()
87 unsigned uLineCount = (GetColCount() - 1)/uCharsPerLine + 1; in ToHTMLFile()
94 if (uEndColIndex >= GetColCount()) in ToHTMLFile()
95 uEndColIndex = GetColCount() - 1; in ToHTMLFile()
H A Dprofile.cpp68 uLength1 = msa1.GetColCount(); in ProfileProfile()
69 uLength2 = msa2.GetColCount(); in ProfileProfile()
105 Progress("%u seqs %u cols", msa1.GetSeqCount(), msa1.GetColCount()); in Profile()
109 Progress("%u seqs %u cols", msa2.GetSeqCount(), msa2.GetColCount()); in Profile()
H A Dcons.cpp17 for (unsigned uColIndex = 0; uColIndex < GetColCount(); ++uColIndex) in GetAvgCons()
72 const unsigned uColCount = GetColCount(); in GetPctIdentityPair()
97 const unsigned uColCount = GetColCount(); in GetPctGroupIdentityPair()
H A Daligntwomsas.cpp11 const unsigned uLengthA = msa1.GetColCount(); in AlignTwoMSAs()
12 const unsigned uLengthB = msa2.GetColCount(); in AlignTwoMSAs()
H A Dfasta.cpp28 const unsigned uColCount = GetColCount(); in ToFASTAFile()
30 const unsigned uLinesPerSeq = (GetColCount() - 1)/FASTA_BLOCK + 1; in ToFASTAFile()
/dports/biology/muscle/muscle-3.8.1551/
H A Dmsf.cpp36 const unsigned uColCount = GetColCount(); in GetGCGCheckSum()
49 const int ColCount = a.GetColCount(); in MSFFixGaps()
73 GetColCount(), seqtype); in ToMSFFile()
91 GetColCount(), GetGCGCheckSum(uSeqIndex), GetSeqWeight(uSeqIndex)); in ToMSFFile()
94 if (0 == GetColCount()) in ToMSFFile()
97 unsigned uLineCount = (GetColCount() - 1)/uCharsPerLine + 1; in ToMSFFile()
103 if (uEndColIndex >= GetColCount()) in ToMSFFile()
104 uEndColIndex = GetColCount() - 1; in ToMSFFile()
H A Dprogalign.cpp64 Node.m_uLength = Node.m_MSA.GetColCount(); in ProgressiveAlignE()
132 unsigned uLength = Parent.m_MSA.GetColCount(); in ProgressiveAlignE()
140 ListProfile(Node1.m_Prof, Node1.m_MSA.GetColCount(), &Node1.m_MSA); in ProgressiveAlignE()
142 ListProfile(P1, Node1.m_MSA.GetColCount(), &Node1.m_MSA); in ProgressiveAlignE()
144 AssertProfsEq(Node1.m_Prof, Node1.m_uLength, P1, Node1.m_MSA.GetColCount()); in ProgressiveAlignE()
147 ListProfile(Node2.m_Prof, Node2.m_MSA.GetColCount(), &Node2.m_MSA); in ProgressiveAlignE()
153 ListProfile(P2, Node2.m_MSA.GetColCount(), &Node2.m_MSA); in ProgressiveAlignE()
155 AssertProfsEq(Node2.m_Prof, Node2.m_uLength, P2, Node2.m_MSA.GetColCount()); in ProgressiveAlignE()
166 ListProfile(TmpProf, Parent.m_MSA.GetColCount(), &Parent.m_MSA); in ProgressiveAlignE()
170 TmpProf, Parent.m_MSA.GetColCount()); in ProgressiveAlignE()
H A Dobjscore2.cpp44 const unsigned uColCount = msa1.GetColCount(); in ScoreSeqPairLetters()
45 const unsigned uColCount2 = msa2.GetColCount(); in ScoreSeqPairLetters()
118 const unsigned uColCount = msa1.GetColCount(); in ScoreSeqPairGaps()
119 const unsigned uColCount2 = msa2.GetColCount(); in ScoreSeqPairGaps()
243 const unsigned uColCount = msa.GetColCount(); in ObjScoreSP()
309 const unsigned uColCount = msa1.GetColCount(); in ObjScoreDP()
310 if (msa2.GetColCount() != uColCount) in ObjScoreDP()
313 const unsigned uColCount1 = msa1.GetColCount(); in ObjScoreDP()
314 const unsigned uColCount2 = msa2.GetColCount(); in ObjScoreDP()
415 const unsigned uColCount = msa.GetColCount(); in ObjScorePS()
[all …]
H A Dmsa.cpp96 if (0 == GetColCount()) in LogMe()
108 unsigned iEnd = GetColCount(); in LogMe()
119 Log(" %-10u", GetColCount()); in LogMe()
253 for (unsigned n = 0; n < GetColCount(); ++n) in HasGap()
272 assert(uFromCol < GetColCount()); in CopyCol()
273 assert(uToCol < GetColCount()); in CopyCol()
439 assert(uColIndex < GetColCount()); in GetCharCount()
548 const unsigned uColCount = GetColCount(); in GetSeqLength()
564 const unsigned uColCount = GetColCount(); in GetPWID()
592 assert(uColIndex < GetColCount()); in UniqueResidueTypes()
[all …]
H A Dmsa2.cpp22 const unsigned uColCount = GetColCount(); in GetFractionalWeightedCounts()
155 if (uColIndex > 0 && uColIndex < GetColCount() - 1) in GetFractionalWeightedCounts()
176 const unsigned uSeqCount = msa.GetColCount(); in MSAColIsConservative()
200 const unsigned uColCount = msaIn.GetColCount(); in MSAFromSeqRange()
220 const unsigned uInColCount = msaIn.GetColCount(); in MSAFromColRange()
267 if (uColIndex >= msa.GetColCount()) in DeleteGappedCols()
279 const unsigned uColCount = msaIn.GetColCount(); in MSAFromSeqSubset()
474 const unsigned uColCount1 = msa1.GetColCount(); in MSAAppend()
475 const unsigned uColCount2 = msa2.GetColCount(); in MSAAppend()
499 const unsigned uColCount1 = msa1.GetColCount(); in MSACat()
[all …]
H A Dprofile.cpp66 uLength1 = msa1.GetColCount(); in ProfileProfile()
67 uLength2 = msa2.GetColCount(); in ProfileProfile()
101 Progress("%u seqs %u cols", msa1.GetSeqCount(), msa1.GetColCount()); in Profile()
105 Progress("%u seqs %u cols", msa2.GetSeqCount(), msa2.GetColCount()); in Profile()
H A Dhtml.cpp16 const unsigned uColCount = a.GetColCount(); in MakeColors()
87 unsigned uLineCount = (GetColCount() - 1)/uCharsPerLine + 1; in ToHTMLFile()
94 if (uEndColIndex >= GetColCount()) in ToHTMLFile()
95 uEndColIndex = GetColCount() - 1; in ToHTMLFile()
H A Dcons.cpp16 for (unsigned uColIndex = 0; uColIndex < GetColCount(); ++uColIndex) in GetAvgCons()
68 const unsigned uColCount = GetColCount(); in GetPctIdentityPair()
93 const unsigned uColCount = GetColCount(); in GetPctGroupIdentityPair()
H A Drefinew.cpp19 const unsigned uColCount1 = msa1.GetColCount(); in AppendMSA()
20 const unsigned uColCount2 = msa2.GetColCount(); in AppendMSA()
75 const unsigned uColCount = msaIn.GetColCount(); in RefineW()
125 unsigned uOutCols = msaOut.GetColCount(); in RefineW()
H A Daligntwomsas.cpp11 const unsigned uLengthA = msa1.GetColCount(); in AlignTwoMSAs()
12 const unsigned uLengthB = msa2.GetColCount(); in AlignTwoMSAs()
H A Dfasta.cpp30 const unsigned uColCount = GetColCount(); in ToFASTAFile()
32 const unsigned uLinesPerSeq = (GetColCount() - 1)/FASTA_BLOCK + 1; in ToFASTAFile()
/dports/editors/libreoffice/libreoffice-7.2.6.2/sw/source/uibase/table/
H A Dtablemgr.cxx64 if(aCols.Count() == GetColCount()) in GetColWidth()
78 SwTwips nRValid = nNum < GetColCount() ? in GetColWidth()
96 if ( GetColCount() > 0 ) in GetMaxColWidth()
106 if(nNum == GetColCount()) in GetMaxColWidth()
125 if(aCols.Count() != GetColCount()) in SetColWidth()
132 else if( nNum < GetColCount() ) in SetColWidth()
329 sal_uInt16 SwTableFUNC::GetColCount() const in GetColCount() function in SwTableFUNC
340 OSL_ENSURE( nNum < static_cast<int>(GetColCount()) ,"Index out of range"); in GetRightSeparator()
/dports/editors/libreoffice6/libreoffice-6.4.7.2/sw/source/uibase/table/
H A Dtablemgr.cxx71 if(aCols.Count() == GetColCount()) in GetColWidth()
85 SwTwips nRValid = nNum < GetColCount() ? in GetColWidth()
103 if ( GetColCount() > 0 ) in GetMaxColWidth()
113 if(nNum == GetColCount()) in GetMaxColWidth()
132 if(aCols.Count() != GetColCount()) in SetColWidth()
139 else if( nNum < GetColCount() ) in SetColWidth()
340 sal_uInt16 SwTableFUNC::GetColCount() const in GetColCount() function in SwTableFUNC
351 OSL_ENSURE( nNum < static_cast<int>(GetColCount()) ,"Index out of range"); in GetRightSeparator()
/dports/editors/libreoffice/libreoffice-7.2.6.2/sw/source/ui/vba/
H A Dvbatablehelper.cxx165 sal_Int32 SwVbaTableHelper::GetColCount( SwTabCols const & rCols ) in GetColCount() function in SwVbaTableHelper
176 OSL_ENSURE( nNum < GetColCount( rCols ) ,"Index out of range"); in GetRightSeparator()
205 if(rCols.Count() == static_cast<size_t>(GetColCount( rCols ))) in GetColWidth()
220 SwTwips nRValid = nNum < GetColCount( rCols ) ? in GetColWidth()
255 else if( nCol < GetColCount( aCols ) ) in SetColWidth()
/dports/editors/libreoffice6/libreoffice-6.4.7.2/sw/source/ui/vba/
H A Dvbatablehelper.cxx165 sal_Int32 SwVbaTableHelper::GetColCount( SwTabCols const & rCols ) in GetColCount() function in SwVbaTableHelper
176 OSL_ENSURE( nNum < GetColCount( rCols ) ,"Index out of range"); in GetRightSeparator()
205 if(rCols.Count() == static_cast<size_t>(GetColCount( rCols ))) in GetColWidth()
220 SwTwips nRValid = nNum < GetColCount( rCols ) ? in GetColWidth()
255 else if( nCol < GetColCount( aCols ) ) in SetColWidth()

12345678910>>...14