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Searched refs:GetCoverageAnnot (Results 1 – 8 of 8) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/sra/readers/sra/
H A Dcsraread.hpp328 CRef<CSeq_annot> GetCoverageAnnot(void) const;
329 CRef<CSeq_annot> GetCoverageAnnot(const string& annot_name) const;
H A Dsnpread.hpp562 CRef<CSeq_annot> GetCoverageAnnot(CRange<TSeqPos> range,
565 CRef<CSeq_annot> GetCoverageAnnot(CRange<TSeqPos> range,
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/readers/sra/test/
H A Dsnp_test.cpp500 CRef<CSeq_annot> annot = it.GetCoverageAnnot(query_range); in Run()
642 annot = seq.GetCoverageAnnot(range); in Run()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/readers/sra/
H A Dsnpread.cpp1215 CSNPDbSeqIterator::GetCoverageAnnot(CRange<TSeqPos> range, in GetCoverageAnnot() function in CSNPDbSeqIterator
1228 CSNPDbSeqIterator::GetCoverageAnnot(CRange<TSeqPos> range, in GetCoverageAnnot() function in CSNPDbSeqIterator
1231 return GetCoverageAnnot(range, kDefaultAnnotName, flags); in GetCoverageAnnot()
H A Dcsraread.cpp734 CRef<CSeq_annot> CCSraRefSeqIterator::GetCoverageAnnot(void) const in GetCoverageAnnot() function in CCSraRefSeqIterator
742 CRef<CSeq_annot> CCSraRefSeqIterator::GetCoverageAnnot(const string& annot_name) const in GetCoverageAnnot() function in CCSraRefSeqIterator
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/data_loaders/snp/
H A Did2snp_impl.cpp829 if ( auto annot = it.GetCoverageAnnot(range, na_acc) ) { in x_LoadChunk()
H A Dsnploader_impl.cpp1220 if ( auto annot = it.GetCoverageAnnot(range, graph_name) ) { in LoadAnnotChunk()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/data_loaders/csra/
H A Dcsraloader_impl.cpp1274 .GetCoverageAnnot(m_File->GetAlignAnnotName()); in LoadRanges()