| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/data_loaders/snp/ |
| H A D | snploader.cpp | 214 string CSNPDataLoader::GetLoaderNameFromArgs(void) in GetLoaderNameFromArgs() function in CSNPDataLoader
216 return GetLoaderNameFromArgs(s_GetDefaultParams()); in GetLoaderNameFromArgs()
220 string CSNPDataLoader::GetLoaderNameFromArgs(const SLoaderParams& params) in GetLoaderNameFromArgs() function in CSNPDataLoader
226 string CSNPDataLoader::GetLoaderNameFromArgs(const string& path) in GetLoaderNameFromArgs() function in CSNPDataLoader
230 return GetLoaderNameFromArgs(params); in GetLoaderNameFromArgs()
234 string CSNPDataLoader::GetLoaderNameFromArgs(const vector<string>& files) in GetLoaderNameFromArgs() function in CSNPDataLoader
238 return GetLoaderNameFromArgs(params); in GetLoaderNameFromArgs()
242 string CSNPDataLoader::GetLoaderNameFromArgs(const string& dir_path, in GetLoaderNameFromArgs() function in CSNPDataLoader
248 return GetLoaderNameFromArgs(params); in GetLoaderNameFromArgs()
252 string CSNPDataLoader::GetLoaderNameFromArgs(const string& dir_path, in GetLoaderNameFromArgs() function in CSNPDataLoader
[all …]
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/sra/data_loaders/snp/ |
| H A D | snploader.hpp | 99 static string GetLoaderNameFromArgs(void);
100 static string GetLoaderNameFromArgs(const SLoaderParams& params);
101 static string GetLoaderNameFromArgs(const string& vdb_file);
102 static string GetLoaderNameFromArgs(const TVDBFiles& vdb_files);
103 static string GetLoaderNameFromArgs(const string& dir_path,
105 static string GetLoaderNameFromArgs(const string& dir_path,
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/data_loaders/vdbgraph/ |
| H A D | vdbgraphloader.cpp | 150 string CVDBGraphDataLoader::GetLoaderNameFromArgs(void) in GetLoaderNameFromArgs() function in CVDBGraphDataLoader
153 return GetLoaderNameFromArgs(params); in GetLoaderNameFromArgs()
157 string CVDBGraphDataLoader::GetLoaderNameFromArgs(const string& vdb_file) in GetLoaderNameFromArgs() function in CVDBGraphDataLoader
160 return GetLoaderNameFromArgs(params); in GetLoaderNameFromArgs()
164 string CVDBGraphDataLoader::GetLoaderNameFromArgs(const TVDBFiles& vdb_files) in GetLoaderNameFromArgs() function in CVDBGraphDataLoader
167 return GetLoaderNameFromArgs(params); in GetLoaderNameFromArgs()
171 string CVDBGraphDataLoader::GetLoaderNameFromArgs(const SLoaderParams& params) in GetLoaderNameFromArgs() function in CVDBGraphDataLoader
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/sra/data_loaders/sra/ |
| H A D | sraloader.hpp | 95 static string GetLoaderNameFromArgs(void);
97 static string GetLoaderNameFromArgs(const string& rep_path,
99 static string GetLoaderNameFromArgs(ETrim trim);
101 static string GetLoaderNameFromArgs(const string& rep_path,
127 static string GetLoaderNameFromArgs(const SLoaderParams& params);
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/data_loaders/bam/ |
| H A D | bamloader.cpp | 153 string CBAMDataLoader::GetLoaderNameFromArgs(void) in GetLoaderNameFromArgs() function in CBAMDataLoader
159 string CBAMDataLoader::GetLoaderNameFromArgs(const SLoaderParams& params) in GetLoaderNameFromArgs() function in CBAMDataLoader
176 string CBAMDataLoader::GetLoaderNameFromArgs(const string& srz_acc) in GetLoaderNameFromArgs() function in CBAMDataLoader
180 return GetLoaderNameFromArgs(params); in GetLoaderNameFromArgs()
184 string CBAMDataLoader::GetLoaderNameFromArgs(const string& dir_path, in GetLoaderNameFromArgs() function in CBAMDataLoader
191 return GetLoaderNameFromArgs(params); in GetLoaderNameFromArgs()
195 string CBAMDataLoader::GetLoaderNameFromArgs( in GetLoaderNameFromArgs() function in CBAMDataLoader
202 return GetLoaderNameFromArgs(params); in GetLoaderNameFromArgs()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/data_loaders/sra/ |
| H A D | sraloader.cpp | 277 string CSRADataLoader::GetLoaderNameFromArgs(const SLoaderParams& params) in GetLoaderNameFromArgs() function in CSRADataLoader
293 string CSRADataLoader::GetLoaderNameFromArgs(void) in GetLoaderNameFromArgs() function in CSRADataLoader
296 return GetLoaderNameFromArgs(params); in GetLoaderNameFromArgs()
300 string CSRADataLoader::GetLoaderNameFromArgs(const string& rep_path, in GetLoaderNameFromArgs() function in CSRADataLoader
306 return GetLoaderNameFromArgs(params); in GetLoaderNameFromArgs()
310 string CSRADataLoader::GetLoaderNameFromArgs(ETrim trim) in GetLoaderNameFromArgs() function in CSRADataLoader
313 return GetLoaderNameFromArgs(params); in GetLoaderNameFromArgs()
317 string CSRADataLoader::GetLoaderNameFromArgs(const string& rep_path, in GetLoaderNameFromArgs() function in CSRADataLoader
324 return GetLoaderNameFromArgs(params); in GetLoaderNameFromArgs()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/sra/data_loaders/bam/ |
| H A D | bamloader.hpp | 104 static string GetLoaderNameFromArgs(void);
105 static string GetLoaderNameFromArgs(const string& srz_acc);
106 static string GetLoaderNameFromArgs(const string& dir_path,
109 static string GetLoaderNameFromArgs(const string& dir_path,
163 static string GetLoaderNameFromArgs(const SLoaderParams& params);
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/sra/data_loaders/vdbgraph/ |
| H A D | vdbgraphloader.hpp | 79 static string GetLoaderNameFromArgs(void);
80 static string GetLoaderNameFromArgs(const string& vdb_files);
81 static string GetLoaderNameFromArgs(const TVDBFiles& vdb_files);
113 static string GetLoaderNameFromArgs(const SLoaderParams& params);
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/sra/data_loaders/csra/ |
| H A D | csraloader.hpp | 124 static string GetLoaderNameFromArgs(void);
125 static string GetLoaderNameFromArgs(const string& srz_acc);
126 static string GetLoaderNameFromArgs(const string& dir_path,
128 static string GetLoaderNameFromArgs(const string& dir_path,
179 static string GetLoaderNameFromArgs(const SLoaderParams& params);
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/data_loaders/csra/ |
| H A D | csraloader.cpp | 326 string CCSRADataLoader::GetLoaderNameFromArgs(void) in GetLoaderNameFromArgs() function in CCSRADataLoader
332 string CCSRADataLoader::GetLoaderNameFromArgs(const SLoaderParams& params) in GetLoaderNameFromArgs() function in CCSRADataLoader
338 string CCSRADataLoader::GetLoaderNameFromArgs(const string& srz_acc) in GetLoaderNameFromArgs() function in CCSRADataLoader
342 return GetLoaderNameFromArgs(params); in GetLoaderNameFromArgs()
346 string CCSRADataLoader::GetLoaderNameFromArgs(const string& dir_path, in GetLoaderNameFromArgs() function in CCSRADataLoader
352 return GetLoaderNameFromArgs(params); in GetLoaderNameFromArgs()
356 string CCSRADataLoader::GetLoaderNameFromArgs( in GetLoaderNameFromArgs() function in CCSRADataLoader
363 return GetLoaderNameFromArgs(params); in GetLoaderNameFromArgs()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objtools/data_loaders/genbank/ |
| H A D | gbloader.hpp | 209 static string GetLoaderNameFromArgs(CReader* reader = 0);
226 static string GetLoaderNameFromArgs(const string& reader_name);
243 static string GetLoaderNameFromArgs(EIncludeHUP include_hup);
261 static string GetLoaderNameFromArgs(const string& reader_name, // pubseqos or pubseqos2
272 static string GetLoaderNameFromArgs(const TParamTree& params);
281 static string GetLoaderNameFromArgs(const CGBLoaderParams& params);
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/data_loaders/genbank/ |
| H A D | gbloader.hpp | 209 static string GetLoaderNameFromArgs(CReader* reader = 0);
226 static string GetLoaderNameFromArgs(const string& reader_name);
243 static string GetLoaderNameFromArgs(EIncludeHUP include_hup);
261 static string GetLoaderNameFromArgs(const string& reader_name, // pubseqos or pubseqos2
272 static string GetLoaderNameFromArgs(const TParamTree& params);
281 static string GetLoaderNameFromArgs(const CGBLoaderParams& params);
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/data_loaders/blastdb/ |
| H A D | bdbloader.hpp | 92 static string GetLoaderNameFromArgs(CConstRef<CSeqDB> db_handle);
93 static string GetLoaderNameFromArgs(const SBlastDbParam& param);
94 static string GetLoaderNameFromArgs(const string& dbname = "nr", in GetLoaderNameFromArgs() function in CBlastDbDataLoader
97 return GetLoaderNameFromArgs(SBlastDbParam(dbname, dbtype)); in GetLoaderNameFromArgs()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objtools/data_loaders/blastdb/ |
| H A D | bdbloader.hpp | 92 static string GetLoaderNameFromArgs(CConstRef<CSeqDB> db_handle);
93 static string GetLoaderNameFromArgs(const SBlastDbParam& param);
94 static string GetLoaderNameFromArgs(const string& dbname = "nr", in GetLoaderNameFromArgs() function in CBlastDbDataLoader
97 return GetLoaderNameFromArgs(SBlastDbParam(dbname, dbtype)); in GetLoaderNameFromArgs()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/data_loaders/wgs/ |
| H A D | wgsloader.cpp | 125 string CWGSDataLoader::GetLoaderNameFromArgs(void) in GetLoaderNameFromArgs() function in CWGSDataLoader
131 string CWGSDataLoader::GetLoaderNameFromArgs(const SLoaderParams& params) in GetLoaderNameFromArgs() function in CWGSDataLoader
133 string ret = GetLoaderNameFromArgs(); in GetLoaderNameFromArgs()
151 string CWGSDataLoader::GetLoaderNameFromArgs( in GetLoaderNameFromArgs() function in CWGSDataLoader
158 return GetLoaderNameFromArgs(params); in GetLoaderNameFromArgs()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/data_loaders/patcher/ |
| H A D | loaderpatcher.hpp | 89 static string GetLoaderNameFromArgs(const SParam& param);
90 static string GetLoaderNameFromArgs(CRef<CDataLoader> data_loader, in GetLoaderNameFromArgs() function in CDataLoaderPatcher
94 return GetLoaderNameFromArgs(SParam(data_loader, db_engine, saver)); in GetLoaderNameFromArgs()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/sra/data_loaders/wgs/ |
| H A D | wgsloader.hpp | 79 static string GetLoaderNameFromArgs(void);
80 static string GetLoaderNameFromArgs(const SLoaderParams& params);
81 static string GetLoaderNameFromArgs(const string& dir_path,
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/data_loaders/lds2/ |
| H A D | lds2_dataloader.hpp | 82 static string GetLoaderNameFromArgs(void);
92 static string GetLoaderNameFromArgs(const string& db_path);
102 static string GetLoaderNameFromArgs(CLDS2_Database& lds_db);
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/data_loaders/genbank/ |
| H A D | gbloader.cpp | 219 string CGBDataLoader::GetLoaderNameFromArgs(CReader* /*driver*/) in GetLoaderNameFromArgs() function in CGBDataLoader
244 string CGBDataLoader::GetLoaderNameFromArgs(const string& /*reader_name*/) in GetLoaderNameFromArgs() function in CGBDataLoader
281 string CGBDataLoader::GetLoaderNameFromArgs(EIncludeHUP /*include_hup*/) in GetLoaderNameFromArgs() function in CGBDataLoader
318 string CGBDataLoader::GetLoaderNameFromArgs(const string& /*reader_name*/, in GetLoaderNameFromArgs() function in CGBDataLoader
344 string CGBDataLoader::GetLoaderNameFromArgs(const TParamTree& /* params */) in GetLoaderNameFromArgs() function in CGBDataLoader
369 string CGBDataLoader::GetLoaderNameFromArgs(const CGBLoaderParams& params) in GetLoaderNameFromArgs() function in CGBDataLoader
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/data_loaders/genbank/ |
| H A D | gbloader.cpp | 219 string CGBDataLoader::GetLoaderNameFromArgs(CReader* /*driver*/) in GetLoaderNameFromArgs() function in CGBDataLoader
244 string CGBDataLoader::GetLoaderNameFromArgs(const string& /*reader_name*/) in GetLoaderNameFromArgs() function in CGBDataLoader
281 string CGBDataLoader::GetLoaderNameFromArgs(EIncludeHUP /*include_hup*/) in GetLoaderNameFromArgs() function in CGBDataLoader
318 string CGBDataLoader::GetLoaderNameFromArgs(const string& /*reader_name*/, in GetLoaderNameFromArgs() function in CGBDataLoader
344 string CGBDataLoader::GetLoaderNameFromArgs(const TParamTree& /* params */) in GetLoaderNameFromArgs() function in CGBDataLoader
369 string CGBDataLoader::GetLoaderNameFromArgs(const CGBLoaderParams& params) in GetLoaderNameFromArgs() function in CGBDataLoader
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/data_loaders/asn_cache/ |
| H A D | asn_cache_loader.hpp | 62 static string GetLoaderNameFromArgs(void);
63 static string GetLoaderNameFromArgs(const string& db_path);
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/data_loaders/cdd/cdd_loader/ |
| H A D | cdd_loader.hpp | 80 static string GetLoaderNameFromArgs(void);
101 static string GetLoaderNameFromArgs(const SLoaderParams& params);
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/blast_format/ |
| H A D | blastfmtutil_unit_test.cpp | 92 DataLoaderRevoker revoker(CGBDataLoader::GetLoaderNameFromArgs()); in BOOST_AUTO_TEST_CASE()
119 CBlastDbDataLoader::GetLoaderNameFromArgs(kDbName, kDbType); in BOOST_AUTO_TEST_CASE()
217 CBlastDbDataLoader::GetLoaderNameFromArgs(kDbName, kDbType); in BOOST_AUTO_TEST_CASE()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/blast_format/ |
| H A D | blastfmtutil_unit_test.cpp | 92 DataLoaderRevoker revoker(CGBDataLoader::GetLoaderNameFromArgs()); in BOOST_AUTO_TEST_CASE()
119 CBlastDbDataLoader::GetLoaderNameFromArgs(kDbName, kDbType); in BOOST_AUTO_TEST_CASE()
217 CBlastDbDataLoader::GetLoaderNameFromArgs(kDbName, kDbType); in BOOST_AUTO_TEST_CASE()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/data_loaders/lds2/ |
| H A D | lds2_dataloader.cpp | 87 string CLDS2_DataLoader::GetLoaderNameFromArgs(void) in GetLoaderNameFromArgs() function in CLDS2_DataLoader
93 string CLDS2_DataLoader::GetLoaderNameFromArgs(const string& db_path) in GetLoaderNameFromArgs() function in CLDS2_DataLoader
108 string CLDS2_DataLoader::GetLoaderNameFromArgs(CLDS2_Database& lds_db) in GetLoaderNameFromArgs() function in CLDS2_DataLoader
110 return GetLoaderNameFromArgs(lds_db.GetDbFile()); in GetLoaderNameFromArgs()
164 m_Name = CLDS2_DataLoader::GetLoaderNameFromArgs(db_path); in CLDS2_LoaderMaker()
177 m_Name = CLDS2_DataLoader::GetLoaderNameFromArgs(m_DbPath); in CLDS2_LoaderMaker()
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