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Searched refs:GetNyparrEntry (Results 1 – 8 of 8) sorted by relevance

/dports/biology/plink/plink-ng-79b2df8c/2.0/
H A Dplink2_misc.cc7522 const uintptr_t hc1 = GetNyparrEntry(pgv.genovec, sample_idx1); in SdiffCountsOnly()
7523 const uintptr_t hc2 = GetNyparrEntry(pgv.genovec, sample_idx2); in SdiffCountsOnly()
7544 const uintptr_t hc1 = GetNyparrEntry(pgv.genovec, sample_idx1); in SdiffCountsOnly()
7545 const uintptr_t hc2 = GetNyparrEntry(pgv.genovec, sample_idx2); in SdiffCountsOnly()
7574 const uintptr_t hc1 = GetNyparrEntry(pgv.genovec, sample_idx1); in SdiffCountsOnly()
7575 const uintptr_t hc2 = GetNyparrEntry(pgv.genovec, sample_idx2); in SdiffCountsOnly()
7628 const uintptr_t hc1 = GetNyparrEntry(pgv.genovec, sample_idx1); in SdiffCountsOnly()
7629 const uintptr_t hc2 = GetNyparrEntry(pgv.genovec, sample_idx2); in SdiffCountsOnly()
7666 const uintptr_t hc1 = GetNyparrEntry(pgv.genovec, sample_idx1); in SdiffCountsOnly()
8157 const uintptr_t hc1 = GetNyparrEntry(pgv.genovec, sample_idx1); in SdiffMainBatch()
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H A Dplink2_common.cc374 if (GetNyparrEntry(genovec, sample_uidx) == 1) { in SetHetMissingCleardosage()
379 if (GetNyparrEntry(genovec, sample_uidx2) == 1) { in SetHetMissingCleardosage()
2038 if (IsSet(sex_male, sample_uidx) && (GetNyparrEntry(genoarr, sample_uidx) == 1)) { in EraseMaleHetDosages()
2043 if (IsSet(sex_male, sample_uidx2) && (GetNyparrEntry(genoarr, sample_uidx2) == 1)) { in EraseMaleHetDosages()
H A Dplink2_data.cc1213 cur_word |= GetNyparrEntry(genovec, new_sample_idx_to_old_iter[uii]); in GenovecResort()
1225 cur_word |= GetNyparrEntry(genovec, new_sample_idx_to_old_iter[uii]); in GenovecResort()
1953 const uintptr_t hardcall_code = GetNyparrEntry(pgv.genovec, sample_uidx); in LoadAlleleAndGenoCountsThread()
2036 const uintptr_t hardcall_code = GetNyparrEntry(pgv.genovec, sample_uidx); in LoadAlleleAndGenoCountsThread()
2050 const uintptr_t hardcall_code = GetNyparrEntry(pgv.genovec, sample_uidx); in LoadAlleleAndGenoCountsThread()
H A Dplink2_glm.cc3646 const uintptr_t cur_geno = GetNyparrEntry(pgv.genovec, sample_idx); in GlmLogisticThread()
3663 const uintptr_t cur_geno = GetNyparrEntry(pgv.genovec, sample_midx); in GlmLogisticThread()
6776 const uintptr_t cur_geno = GetNyparrEntry(pgv.genovec, sample_idx); in GlmLinearThread()
6794 const uintptr_t cur_geno = GetNyparrEntry(pgv.genovec, sample_midx); in GlmLinearThread()
8839 const uintptr_t cur_geno = GetNyparrEntry(pgv.genovec, sample_idx); in GlmLinearSubbatchThread()
8857 const uintptr_t cur_geno = GetNyparrEntry(pgv.genovec, sample_midx); in GlmLinearSubbatchThread()
/dports/biology/plink/plink-ng-79b2df8c/2.0/include/
H A Dpgenlib_misc.h133 HEADER_INLINE uintptr_t GetNyparrEntry(const uintptr_t* nyparr, uint32_t idx) { in GetNyparrEntry() function
H A Dpgenlib_write.cc576 const uint32_t cur_raregeno = GetNyparrEntry(raregeno, difflist_idx); in CountLdAndInvertedLdDiffsList()
577 const uint32_t cur_ldbase_raregeno = GetNyparrEntry(ldbase_raregeno, ldbase_difflist_idx - 1); in CountLdAndInvertedLdDiffsList()
H A Dpgenlib_read.cc2950 delta_counts[cur_geno * 4 + GetNyparrEntry(ldbase_genovec, raw_sample_idx)] += 1;
2967 delta_counts[cur_geno * 4 + GetNyparrEntry(ldbase_genovec, sample_idx)] += 1;
9704 if (unlikely(GetNyparrEntry(raw_genovec, deltalist_workspace[uii]) != 1)) { in ValidateMultiallelicHc()
9845 if (unlikely(GetNyparrEntry(raw_genovec, deltalist_workspace[uii]) != 2)) { in ValidateMultiallelicHc()
H A Dpgenlib_misc.cc1094 genocounts[GetNyparrEntry(raregeno, difflist_idx)] += 1;