Searched refs:GetNyparrEntry (Results 1 – 8 of 8) sorted by relevance
/dports/biology/plink/plink-ng-79b2df8c/2.0/ |
H A D | plink2_misc.cc | 7522 const uintptr_t hc1 = GetNyparrEntry(pgv.genovec, sample_idx1); in SdiffCountsOnly() 7523 const uintptr_t hc2 = GetNyparrEntry(pgv.genovec, sample_idx2); in SdiffCountsOnly() 7544 const uintptr_t hc1 = GetNyparrEntry(pgv.genovec, sample_idx1); in SdiffCountsOnly() 7545 const uintptr_t hc2 = GetNyparrEntry(pgv.genovec, sample_idx2); in SdiffCountsOnly() 7574 const uintptr_t hc1 = GetNyparrEntry(pgv.genovec, sample_idx1); in SdiffCountsOnly() 7575 const uintptr_t hc2 = GetNyparrEntry(pgv.genovec, sample_idx2); in SdiffCountsOnly() 7628 const uintptr_t hc1 = GetNyparrEntry(pgv.genovec, sample_idx1); in SdiffCountsOnly() 7629 const uintptr_t hc2 = GetNyparrEntry(pgv.genovec, sample_idx2); in SdiffCountsOnly() 7666 const uintptr_t hc1 = GetNyparrEntry(pgv.genovec, sample_idx1); in SdiffCountsOnly() 8157 const uintptr_t hc1 = GetNyparrEntry(pgv.genovec, sample_idx1); in SdiffMainBatch() [all …]
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H A D | plink2_common.cc | 374 if (GetNyparrEntry(genovec, sample_uidx) == 1) { in SetHetMissingCleardosage() 379 if (GetNyparrEntry(genovec, sample_uidx2) == 1) { in SetHetMissingCleardosage() 2038 if (IsSet(sex_male, sample_uidx) && (GetNyparrEntry(genoarr, sample_uidx) == 1)) { in EraseMaleHetDosages() 2043 if (IsSet(sex_male, sample_uidx2) && (GetNyparrEntry(genoarr, sample_uidx2) == 1)) { in EraseMaleHetDosages()
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H A D | plink2_data.cc | 1213 cur_word |= GetNyparrEntry(genovec, new_sample_idx_to_old_iter[uii]); in GenovecResort() 1225 cur_word |= GetNyparrEntry(genovec, new_sample_idx_to_old_iter[uii]); in GenovecResort() 1953 const uintptr_t hardcall_code = GetNyparrEntry(pgv.genovec, sample_uidx); in LoadAlleleAndGenoCountsThread() 2036 const uintptr_t hardcall_code = GetNyparrEntry(pgv.genovec, sample_uidx); in LoadAlleleAndGenoCountsThread() 2050 const uintptr_t hardcall_code = GetNyparrEntry(pgv.genovec, sample_uidx); in LoadAlleleAndGenoCountsThread()
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H A D | plink2_glm.cc | 3646 const uintptr_t cur_geno = GetNyparrEntry(pgv.genovec, sample_idx); in GlmLogisticThread() 3663 const uintptr_t cur_geno = GetNyparrEntry(pgv.genovec, sample_midx); in GlmLogisticThread() 6776 const uintptr_t cur_geno = GetNyparrEntry(pgv.genovec, sample_idx); in GlmLinearThread() 6794 const uintptr_t cur_geno = GetNyparrEntry(pgv.genovec, sample_midx); in GlmLinearThread() 8839 const uintptr_t cur_geno = GetNyparrEntry(pgv.genovec, sample_idx); in GlmLinearSubbatchThread() 8857 const uintptr_t cur_geno = GetNyparrEntry(pgv.genovec, sample_midx); in GlmLinearSubbatchThread()
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/dports/biology/plink/plink-ng-79b2df8c/2.0/include/ |
H A D | pgenlib_misc.h | 133 HEADER_INLINE uintptr_t GetNyparrEntry(const uintptr_t* nyparr, uint32_t idx) { in GetNyparrEntry() function
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H A D | pgenlib_write.cc | 576 const uint32_t cur_raregeno = GetNyparrEntry(raregeno, difflist_idx); in CountLdAndInvertedLdDiffsList() 577 const uint32_t cur_ldbase_raregeno = GetNyparrEntry(ldbase_raregeno, ldbase_difflist_idx - 1); in CountLdAndInvertedLdDiffsList()
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H A D | pgenlib_read.cc | 2950 delta_counts[cur_geno * 4 + GetNyparrEntry(ldbase_genovec, raw_sample_idx)] += 1; 2967 delta_counts[cur_geno * 4 + GetNyparrEntry(ldbase_genovec, sample_idx)] += 1; 9704 if (unlikely(GetNyparrEntry(raw_genovec, deltalist_workspace[uii]) != 1)) { in ValidateMultiallelicHc() 9845 if (unlikely(GetNyparrEntry(raw_genovec, deltalist_workspace[uii]) != 2)) { in ValidateMultiallelicHc()
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H A D | pgenlib_misc.cc | 1094 genocounts[GetNyparrEntry(raregeno, difflist_idx)] += 1;
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