/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/blast/seqdb_writer/unit_test/ |
H A D | writedb_lmdb_unit_test.cpp | 69 list< CRef<CSeq_id> > ids = source_db.GetSeqIDs(i); in BOOST_AUTO_TEST_CASE() 93 list< CRef<CSeq_id> > ids = source_db.GetSeqIDs(i); in BOOST_AUTO_TEST_CASE() 167 list< CRef<CSeq_id> > ids = source_db.GetSeqIDs(i); in BOOST_AUTO_TEST_CASE() 191 list< CRef<CSeq_id> > ids = source_db.GetSeqIDs(i); in BOOST_AUTO_TEST_CASE()
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H A D | writedb_unit_test.cpp | 2955 list< CRef<CSeq_id> > ids = seqdb.GetSeqIDs(index++); in BOOST_AUTO_TEST_CASE() 3012 list< CRef<CSeq_id> > ids = seqdb.GetSeqIDs(0); in BOOST_AUTO_TEST_CASE() 3077 list< CRef<CSeq_id> > ids = seqdb.GetSeqIDs(index++); in BOOST_AUTO_TEST_CASE() 3146 list< CRef<CSeq_id> > ids = seqdb.GetSeqIDs(index++); in BOOST_AUTO_TEST_CASE() 3203 list< CRef<CSeq_id> > ids = seqdb.GetSeqIDs(0); in BOOST_AUTO_TEST_CASE() 3264 list< CRef<CSeq_id> > ids = seqdb.GetSeqIDs(index++); in BOOST_AUTO_TEST_CASE() 3379 list< CRef<CSeq_id> > ids = seqdb.GetSeqIDs(0); in BOOST_AUTO_TEST_CASE() 3410 list<CRef<CSeq_id> > seq_ids = seqdb.GetSeqIDs(oid); in BOOST_AUTO_TEST_CASE() 3465 list<CRef<CSeq_id> > seq_ids = seqdb.GetSeqIDs(oid); in s_TestReadPDBAsn1()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/blast/seqdb_writer/unit_test/ |
H A D | writedb_lmdb_unit_test.cpp | 69 list< CRef<CSeq_id> > ids = source_db.GetSeqIDs(i); in BOOST_AUTO_TEST_CASE() 93 list< CRef<CSeq_id> > ids = source_db.GetSeqIDs(i); in BOOST_AUTO_TEST_CASE() 167 list< CRef<CSeq_id> > ids = source_db.GetSeqIDs(i); in BOOST_AUTO_TEST_CASE() 191 list< CRef<CSeq_id> > ids = source_db.GetSeqIDs(i); in BOOST_AUTO_TEST_CASE()
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H A D | writedb_unit_test.cpp | 2955 list< CRef<CSeq_id> > ids = seqdb.GetSeqIDs(index++); in BOOST_AUTO_TEST_CASE() 3012 list< CRef<CSeq_id> > ids = seqdb.GetSeqIDs(0); in BOOST_AUTO_TEST_CASE() 3077 list< CRef<CSeq_id> > ids = seqdb.GetSeqIDs(index++); in BOOST_AUTO_TEST_CASE() 3146 list< CRef<CSeq_id> > ids = seqdb.GetSeqIDs(index++); in BOOST_AUTO_TEST_CASE() 3203 list< CRef<CSeq_id> > ids = seqdb.GetSeqIDs(0); in BOOST_AUTO_TEST_CASE() 3264 list< CRef<CSeq_id> > ids = seqdb.GetSeqIDs(index++); in BOOST_AUTO_TEST_CASE() 3379 list< CRef<CSeq_id> > ids = seqdb.GetSeqIDs(0); in BOOST_AUTO_TEST_CASE() 3410 list<CRef<CSeq_id> > seq_ids = seqdb.GetSeqIDs(oid); in BOOST_AUTO_TEST_CASE() 3465 list<CRef<CSeq_id> > seq_ids = seqdb.GetSeqIDs(oid); in s_TestReadPDBAsn1()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/data_loaders/blastdb/ |
H A D | local_blastdb_adapter.cpp | 78 CLocalBlastDbAdapter::GetSeqIDs(int oid) in GetSeqIDs() function in CLocalBlastDbAdapter 80 return m_SeqDB->GetSeqIDs(oid); in GetSeqIDs()
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H A D | local_blastdb_adapter.hpp | 64 virtual TSeqIdList GetSeqIDs(int oid);
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H A D | remote_blastdb_adapter.hpp | 190 virtual TSeqIdList GetSeqIDs(int oid);
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/data_loaders/blastdb/ |
H A D | local_blastdb_adapter.cpp | 78 CLocalBlastDbAdapter::GetSeqIDs(int oid) in GetSeqIDs() function in CLocalBlastDbAdapter 80 return m_SeqDB->GetSeqIDs(oid); in GetSeqIDs()
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H A D | local_blastdb_adapter.hpp | 64 virtual TSeqIdList GetSeqIDs(int oid);
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H A D | remote_blastdb_adapter.hpp | 190 virtual TSeqIdList GetSeqIDs(int oid);
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/structure/cd_utils/ |
H A D | cuCdCore.hpp | 149 …bool GetSeqIDs(int SeqIndex, list< CRef< CSeq_id > >& SeqIDs); // get all SeqIDs from sequence… 150 …const list< CRef< CSeq_id > >& GetSeqIDs(int SeqIndex) const; // get all SeqIDs from sequence li…
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/data_loaders/blastdb/ |
H A D | blastdb_adapter.hpp | 87 virtual list< CRef<CSeq_id> > GetSeqIDs(int oid) = 0;
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objtools/data_loaders/blastdb/ |
H A D | blastdb_adapter.hpp | 87 virtual list< CRef<CSeq_id> > GetSeqIDs(int oid) = 0;
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/dports/biology/diamond/diamond-2.0.13/src/data/blastdb/ |
H A D | blastdb.cpp | 146 return (*best_id(db_->GetSeqIDs(seq_info.pos)))->GetSeqIdString(true).length(); in id_len() 172 const string id = (*best_id(db_->GetSeqIDs(oid)))->GetSeqIdString(true); in read_id_data() 488 list<CRef<CSeq_id>> ids = volume.GetSeqIDs(i); in prep_blast_db()
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/dports/biology/diamond/diamond-2.0.13/src/tools/ |
H A D | benchmark_io.cpp | 192 auto l = ((BlastDB*)db)->db_->GetSeqIDs(dist(g)); in load_blast_seqid() 210 auto l = ((BlastDB*)db)->db_->GetSeqIDs(i); in load_blast_seqid_lin()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/api/ |
H A D | seqinfosrc_seqdb.cpp | 69 return m_iSeqDb->GetSeqIDs(index); in GetId()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/api/ |
H A D | seqinfosrc_seqdb.cpp | 69 return m_iSeqDb->GetSeqIDs(index); in GetId()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/blast/seqdb_reader/impl/ |
H A D | seqdbvol.hpp | 409 list< CRef<CSeq_id> > GetSeqIDs(int oid) const; 411 list< CRef<CSeq_id> > GetSeqIDs(int oid, CObjectIStreamAsnBinary *inpstr) const;
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objtools/blast/seqdb_reader/impl/ |
H A D | seqdbvol.hpp | 409 list< CRef<CSeq_id> > GetSeqIDs(int oid) const; 411 list< CRef<CSeq_id> > GetSeqIDs(int oid, CObjectIStreamAsnBinary *inpstr) const;
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/dbindex/ |
H A D | sequence_istream_bdb.cpp | 110 list< CRef< CSeq_id > > ids( seqdb_->GetSeqIDs( oid_ ) ); in next()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/dbindex/ |
H A D | sequence_istream_bdb.cpp | 110 list< CRef< CSeq_id > > ids( seqdb_->GetSeqIDs( oid_ ) ); in next()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/proteinkmer/ |
H A D | blastkmerresults.cpp | 54 list< CRef<CSeq_id> > seqids = m_SeqDB->GetSeqIDs((*iter).first); in x_InitScoreVec()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/proteinkmer/ |
H A D | blastkmerresults.cpp | 54 list< CRef<CSeq_id> > seqids = m_SeqDB->GetSeqIDs((*iter).first); in x_InitScoreVec()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/seqdb_reader/ |
H A D | seqdb_unit_test.cpp | 669 seqp.GetSeqIDs(0); in BOOST_AUTO_TEST_CASE() 694 seqp.GetSeqIDs(0); in BOOST_AUTO_TEST_CASE() 1517 list< CRef<CSeq_id> > ids = db.GetSeqIDs(oid); in BOOST_AUTO_TEST_CASE() 2947 TIds the_ids = db.GetSeqIDs(oid); in BOOST_AUTO_TEST_CASE() 3003 BOOST_REQUIRE_THROW(db.GetSeqIDs(0), CSeqDBException); in BOOST_AUTO_TEST_CASE() 3138 list< CRef<CSeq_id> > ids = db.GetSeqIDs(oi); in BOOST_AUTO_TEST_CASE() 3342 list< CRef<CSeq_id> > got_ids = have_got.GetSeqIDs(oid1); in BOOST_AUTO_TEST_CASE() 3343 list< CRef<CSeq_id> > not_ids = have_not.GetSeqIDs(oid1); in BOOST_AUTO_TEST_CASE() 4239 list< CRef<CSeq_id> > ids = db.GetSeqIDs(1); in BOOST_AUTO_TEST_CASE() 4324 list< CRef<CSeq_id> > ids = pig_db.GetSeqIDs(oid); in BOOST_AUTO_TEST_CASE()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/seqdb_reader/ |
H A D | seqdb_unit_test.cpp | 669 seqp.GetSeqIDs(0); in BOOST_AUTO_TEST_CASE() 694 seqp.GetSeqIDs(0); in BOOST_AUTO_TEST_CASE() 1517 list< CRef<CSeq_id> > ids = db.GetSeqIDs(oid); in BOOST_AUTO_TEST_CASE() 2948 TIds the_ids = db.GetSeqIDs(oid); in BOOST_AUTO_TEST_CASE() 3004 BOOST_REQUIRE_THROW(db.GetSeqIDs(0), CSeqDBException); in BOOST_AUTO_TEST_CASE() 3139 list< CRef<CSeq_id> > ids = db.GetSeqIDs(oi); in BOOST_AUTO_TEST_CASE() 3343 list< CRef<CSeq_id> > got_ids = have_got.GetSeqIDs(oid1); in BOOST_AUTO_TEST_CASE() 3344 list< CRef<CSeq_id> > not_ids = have_not.GetSeqIDs(oid1); in BOOST_AUTO_TEST_CASE() 4240 list< CRef<CSeq_id> > ids = db.GetSeqIDs(1); in BOOST_AUTO_TEST_CASE() 4325 list< CRef<CSeq_id> > ids = pig_db.GetSeqIDs(oid); in BOOST_AUTO_TEST_CASE()
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