Home
last modified time | relevance | path

Searched refs:GetSeqIDs (Results 1 – 25 of 58) sorted by relevance

123

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/blast/seqdb_writer/unit_test/
H A Dwritedb_lmdb_unit_test.cpp69 list< CRef<CSeq_id> > ids = source_db.GetSeqIDs(i); in BOOST_AUTO_TEST_CASE()
93 list< CRef<CSeq_id> > ids = source_db.GetSeqIDs(i); in BOOST_AUTO_TEST_CASE()
167 list< CRef<CSeq_id> > ids = source_db.GetSeqIDs(i); in BOOST_AUTO_TEST_CASE()
191 list< CRef<CSeq_id> > ids = source_db.GetSeqIDs(i); in BOOST_AUTO_TEST_CASE()
H A Dwritedb_unit_test.cpp2955 list< CRef<CSeq_id> > ids = seqdb.GetSeqIDs(index++); in BOOST_AUTO_TEST_CASE()
3012 list< CRef<CSeq_id> > ids = seqdb.GetSeqIDs(0); in BOOST_AUTO_TEST_CASE()
3077 list< CRef<CSeq_id> > ids = seqdb.GetSeqIDs(index++); in BOOST_AUTO_TEST_CASE()
3146 list< CRef<CSeq_id> > ids = seqdb.GetSeqIDs(index++); in BOOST_AUTO_TEST_CASE()
3203 list< CRef<CSeq_id> > ids = seqdb.GetSeqIDs(0); in BOOST_AUTO_TEST_CASE()
3264 list< CRef<CSeq_id> > ids = seqdb.GetSeqIDs(index++); in BOOST_AUTO_TEST_CASE()
3379 list< CRef<CSeq_id> > ids = seqdb.GetSeqIDs(0); in BOOST_AUTO_TEST_CASE()
3410 list<CRef<CSeq_id> > seq_ids = seqdb.GetSeqIDs(oid); in BOOST_AUTO_TEST_CASE()
3465 list<CRef<CSeq_id> > seq_ids = seqdb.GetSeqIDs(oid); in s_TestReadPDBAsn1()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/blast/seqdb_writer/unit_test/
H A Dwritedb_lmdb_unit_test.cpp69 list< CRef<CSeq_id> > ids = source_db.GetSeqIDs(i); in BOOST_AUTO_TEST_CASE()
93 list< CRef<CSeq_id> > ids = source_db.GetSeqIDs(i); in BOOST_AUTO_TEST_CASE()
167 list< CRef<CSeq_id> > ids = source_db.GetSeqIDs(i); in BOOST_AUTO_TEST_CASE()
191 list< CRef<CSeq_id> > ids = source_db.GetSeqIDs(i); in BOOST_AUTO_TEST_CASE()
H A Dwritedb_unit_test.cpp2955 list< CRef<CSeq_id> > ids = seqdb.GetSeqIDs(index++); in BOOST_AUTO_TEST_CASE()
3012 list< CRef<CSeq_id> > ids = seqdb.GetSeqIDs(0); in BOOST_AUTO_TEST_CASE()
3077 list< CRef<CSeq_id> > ids = seqdb.GetSeqIDs(index++); in BOOST_AUTO_TEST_CASE()
3146 list< CRef<CSeq_id> > ids = seqdb.GetSeqIDs(index++); in BOOST_AUTO_TEST_CASE()
3203 list< CRef<CSeq_id> > ids = seqdb.GetSeqIDs(0); in BOOST_AUTO_TEST_CASE()
3264 list< CRef<CSeq_id> > ids = seqdb.GetSeqIDs(index++); in BOOST_AUTO_TEST_CASE()
3379 list< CRef<CSeq_id> > ids = seqdb.GetSeqIDs(0); in BOOST_AUTO_TEST_CASE()
3410 list<CRef<CSeq_id> > seq_ids = seqdb.GetSeqIDs(oid); in BOOST_AUTO_TEST_CASE()
3465 list<CRef<CSeq_id> > seq_ids = seqdb.GetSeqIDs(oid); in s_TestReadPDBAsn1()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/data_loaders/blastdb/
H A Dlocal_blastdb_adapter.cpp78 CLocalBlastDbAdapter::GetSeqIDs(int oid) in GetSeqIDs() function in CLocalBlastDbAdapter
80 return m_SeqDB->GetSeqIDs(oid); in GetSeqIDs()
H A Dlocal_blastdb_adapter.hpp64 virtual TSeqIdList GetSeqIDs(int oid);
H A Dremote_blastdb_adapter.hpp190 virtual TSeqIdList GetSeqIDs(int oid);
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/data_loaders/blastdb/
H A Dlocal_blastdb_adapter.cpp78 CLocalBlastDbAdapter::GetSeqIDs(int oid) in GetSeqIDs() function in CLocalBlastDbAdapter
80 return m_SeqDB->GetSeqIDs(oid); in GetSeqIDs()
H A Dlocal_blastdb_adapter.hpp64 virtual TSeqIdList GetSeqIDs(int oid);
H A Dremote_blastdb_adapter.hpp190 virtual TSeqIdList GetSeqIDs(int oid);
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/structure/cd_utils/
H A DcuCdCore.hpp149 …bool GetSeqIDs(int SeqIndex, list< CRef< CSeq_id > >& SeqIDs); // get all SeqIDs from sequence…
150 …const list< CRef< CSeq_id > >& GetSeqIDs(int SeqIndex) const; // get all SeqIDs from sequence li…
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/data_loaders/blastdb/
H A Dblastdb_adapter.hpp87 virtual list< CRef<CSeq_id> > GetSeqIDs(int oid) = 0;
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objtools/data_loaders/blastdb/
H A Dblastdb_adapter.hpp87 virtual list< CRef<CSeq_id> > GetSeqIDs(int oid) = 0;
/dports/biology/diamond/diamond-2.0.13/src/data/blastdb/
H A Dblastdb.cpp146 return (*best_id(db_->GetSeqIDs(seq_info.pos)))->GetSeqIdString(true).length(); in id_len()
172 const string id = (*best_id(db_->GetSeqIDs(oid)))->GetSeqIdString(true); in read_id_data()
488 list<CRef<CSeq_id>> ids = volume.GetSeqIDs(i); in prep_blast_db()
/dports/biology/diamond/diamond-2.0.13/src/tools/
H A Dbenchmark_io.cpp192 auto l = ((BlastDB*)db)->db_->GetSeqIDs(dist(g)); in load_blast_seqid()
210 auto l = ((BlastDB*)db)->db_->GetSeqIDs(i); in load_blast_seqid_lin()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/api/
H A Dseqinfosrc_seqdb.cpp69 return m_iSeqDb->GetSeqIDs(index); in GetId()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/api/
H A Dseqinfosrc_seqdb.cpp69 return m_iSeqDb->GetSeqIDs(index); in GetId()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/blast/seqdb_reader/impl/
H A Dseqdbvol.hpp409 list< CRef<CSeq_id> > GetSeqIDs(int oid) const;
411 list< CRef<CSeq_id> > GetSeqIDs(int oid, CObjectIStreamAsnBinary *inpstr) const;
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objtools/blast/seqdb_reader/impl/
H A Dseqdbvol.hpp409 list< CRef<CSeq_id> > GetSeqIDs(int oid) const;
411 list< CRef<CSeq_id> > GetSeqIDs(int oid, CObjectIStreamAsnBinary *inpstr) const;
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/dbindex/
H A Dsequence_istream_bdb.cpp110 list< CRef< CSeq_id > > ids( seqdb_->GetSeqIDs( oid_ ) ); in next()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/dbindex/
H A Dsequence_istream_bdb.cpp110 list< CRef< CSeq_id > > ids( seqdb_->GetSeqIDs( oid_ ) ); in next()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/proteinkmer/
H A Dblastkmerresults.cpp54 list< CRef<CSeq_id> > seqids = m_SeqDB->GetSeqIDs((*iter).first); in x_InitScoreVec()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/proteinkmer/
H A Dblastkmerresults.cpp54 list< CRef<CSeq_id> > seqids = m_SeqDB->GetSeqIDs((*iter).first); in x_InitScoreVec()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/seqdb_reader/
H A Dseqdb_unit_test.cpp669 seqp.GetSeqIDs(0); in BOOST_AUTO_TEST_CASE()
694 seqp.GetSeqIDs(0); in BOOST_AUTO_TEST_CASE()
1517 list< CRef<CSeq_id> > ids = db.GetSeqIDs(oid); in BOOST_AUTO_TEST_CASE()
2947 TIds the_ids = db.GetSeqIDs(oid); in BOOST_AUTO_TEST_CASE()
3003 BOOST_REQUIRE_THROW(db.GetSeqIDs(0), CSeqDBException); in BOOST_AUTO_TEST_CASE()
3138 list< CRef<CSeq_id> > ids = db.GetSeqIDs(oi); in BOOST_AUTO_TEST_CASE()
3342 list< CRef<CSeq_id> > got_ids = have_got.GetSeqIDs(oid1); in BOOST_AUTO_TEST_CASE()
3343 list< CRef<CSeq_id> > not_ids = have_not.GetSeqIDs(oid1); in BOOST_AUTO_TEST_CASE()
4239 list< CRef<CSeq_id> > ids = db.GetSeqIDs(1); in BOOST_AUTO_TEST_CASE()
4324 list< CRef<CSeq_id> > ids = pig_db.GetSeqIDs(oid); in BOOST_AUTO_TEST_CASE()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/seqdb_reader/
H A Dseqdb_unit_test.cpp669 seqp.GetSeqIDs(0); in BOOST_AUTO_TEST_CASE()
694 seqp.GetSeqIDs(0); in BOOST_AUTO_TEST_CASE()
1517 list< CRef<CSeq_id> > ids = db.GetSeqIDs(oid); in BOOST_AUTO_TEST_CASE()
2948 TIds the_ids = db.GetSeqIDs(oid); in BOOST_AUTO_TEST_CASE()
3004 BOOST_REQUIRE_THROW(db.GetSeqIDs(0), CSeqDBException); in BOOST_AUTO_TEST_CASE()
3139 list< CRef<CSeq_id> > ids = db.GetSeqIDs(oi); in BOOST_AUTO_TEST_CASE()
3343 list< CRef<CSeq_id> > got_ids = have_got.GetSeqIDs(oid1); in BOOST_AUTO_TEST_CASE()
3344 list< CRef<CSeq_id> > not_ids = have_not.GetSeqIDs(oid1); in BOOST_AUTO_TEST_CASE()
4240 list< CRef<CSeq_id> > ids = db.GetSeqIDs(1); in BOOST_AUTO_TEST_CASE()
4325 list< CRef<CSeq_id> > ids = pig_db.GetSeqIDs(oid); in BOOST_AUTO_TEST_CASE()

123