Home
last modified time | relevance | path

Searched refs:GetTotalRange (Results 1 – 25 of 131) sorted by relevance

123456

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/util/
H A Dfeature_edit.cpp52 CRange<TSeqPos> cb_range = code_break->GetLoc().GetTotalRange(); in operator ()()
64 if (code_break.GetLoc().GetTotalRange().IntersectionWith(range).NotEmpty()) in Apply()
72 const TSeqPos cb_to = code_break.GetLoc().GetTotalRange().GetTo(); in Apply()
80 const TSeqPos cb_from = code_break.GetLoc().GetTotalRange().GetFrom(); in Apply()
94 if (trna_ext.GetAnticodon().GetTotalRange().IntersectionWith(range).NotEmpty()) in Apply()
164 const TSeqPos cb_to = code_break->GetLoc().GetTotalRange().GetTo(); in Apply()
172 const TSeqPos cb_from = code_break->GetLoc().GetTotalRange().GetFrom(); in Apply()
343 CRange<TSeqPos> feat_range = feat.GetLocation().GetTotalRange(); in x_GetStartOffset()
435 CRange<TSeqPos> ac_range = ext.GetAnticodon().GetTotalRange(); in x_TrimTrnaExt()
H A Dweight.cpp149 if (loc.GetTotalRange().GetFrom() > 0 || in GetProteinWeight()
150 loc.GetTotalRange().GetLength() < bsh.GetBioseqLength()) { in GetProteinWeight()
225 (location->GetTotalRange().GetFrom() > 0 || in GetProteinWeight()
226 location->GetTotalRange().GetLength() < handle.GetBioseqLength())) { in GetProteinWeight()
342 interval.SetFrom(signal->GetTotalRange().GetTo() + 1); in GetProteinWeights()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/util/
H A Dfeature_edit.cpp52 CRange<TSeqPos> cb_range = code_break->GetLoc().GetTotalRange(); in operator ()()
64 if (code_break.GetLoc().GetTotalRange().IntersectionWith(range).NotEmpty()) in Apply()
72 const TSeqPos cb_to = code_break.GetLoc().GetTotalRange().GetTo(); in Apply()
80 const TSeqPos cb_from = code_break.GetLoc().GetTotalRange().GetFrom(); in Apply()
94 if (trna_ext.GetAnticodon().GetTotalRange().IntersectionWith(range).NotEmpty()) in Apply()
164 const TSeqPos cb_to = code_break->GetLoc().GetTotalRange().GetTo(); in Apply()
172 const TSeqPos cb_from = code_break->GetLoc().GetTotalRange().GetFrom(); in Apply()
343 CRange<TSeqPos> feat_range = feat.GetLocation().GetTotalRange(); in x_GetStartOffset()
435 CRange<TSeqPos> ac_range = ext.GetAnticodon().GetTotalRange(); in x_TrimTrnaExt()
H A Dweight.cpp149 if (loc.GetTotalRange().GetFrom() > 0 || in GetProteinWeight()
150 loc.GetTotalRange().GetLength() < bsh.GetBioseqLength()) { in GetProteinWeight()
225 (location->GetTotalRange().GetFrom() > 0 || in GetProteinWeight()
226 location->GetTotalRange().GetLength() < handle.GetBioseqLength())) { in GetProteinWeight()
342 interval.SetFrom(signal->GetTotalRange().GetTo() + 1); in GetProteinWeights()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/
H A Dmapped_feat.cpp203 m_MappingInfoPtr->GetTotalRange(): in GetRange()
221 m_MappingInfoPtr->GetTotalRange(): in GetProductTotalRange()
H A Dseq_feat_handle.cpp299 return GetSeq_feat()->GetLocation().GetTotalRange(); in GetRange()
307 return GetSeq_feat()->GetLocation().GetTotalRange(); in GetRange()
328 return GetProduct().GetTotalRange(); in GetProductTotalRange()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/
H A Dmapped_feat.cpp203 m_MappingInfoPtr->GetTotalRange(): in GetRange()
221 m_MappingInfoPtr->GetTotalRange(): in GetProductTotalRange()
H A Dseq_feat_handle.cpp299 return GetSeq_feat()->GetLocation().GetTotalRange(); in GetRange()
307 return GetSeq_feat()->GetLocation().GetTotalRange(); in GetRange()
328 return GetProduct().GetTotalRange(); in GetProductTotalRange()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/util/
H A Dpatch_sequence.cpp141 : (*delta_it)->GetLoc().GetTotalRange().GetLength(); in s_ProcessIntraScaffoldTail()
188 current_pos -= (*delta_it)->GetLoc().GetTotalRange().GetLength(); in s_ProcessIntraScaffoldTail()
291 next_pos += target_loc.GetTotalRange().GetLength(); in PatchTargetSequence()
392 : (*it)->GetLoc().GetTotalRange().GetLength(); in PatchTargetSequence()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/split/
H A Did_range.cpp73 Add(range.GetTotalRange()); in BEGIN_SCOPE()
111 TRange range = it->second.GetTotalRange(); in Print()
434 auto r1 = i1->second.GetTotalRange(); in Compare()
435 auto r2 = i2->second.GetTotalRange(); in Compare()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/split/
H A Did_range.cpp73 Add(range.GetTotalRange()); in BEGIN_SCOPE()
111 TRange range = it->second.GetTotalRange(); in Print()
434 auto r1 = i1->second.GetTotalRange(); in Compare()
435 auto r2 = i2->second.GetTotalRange(); in Compare()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/sequence/
H A Dannot_compare.cpp120 TSeqRange range1 = loc1.GetTotalRange(); in CompareFeats()
121 TSeqRange range2 = loc2.GetTotalRange(); in CompareFeats()
H A Dutil.cpp90 TSeqRange range = loc.GetTotalRange(); in SeqLocToBioseq()
126 TSeqRange range = loc.GetTotalRange(); in SeqLocToBioseq()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/validator/
H A Dvaliderror_graph.cpp242 if ( (int)loc.GetTotalRange().GetFrom() <= last_loc ) { in ValidateGraphsOnBioseq()
246 last_loc = loc.GetTotalRange().GetTo(); in ValidateGraphsOnBioseq()
512 TSeqPos from = graph_loc.GetTotalRange().GetFrom(); in x_ValidateGraphOnDeltaBioseq()
513 TSeqPos to = graph_loc.GetTotalRange().GetTo(); in x_ValidateGraphOnDeltaBioseq()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objmgr/
H A Dmapped_feat.hpp93 TRange GetTotalRange(void) const in GetTotalRange() function in CMappedFeat
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objmgr/
H A Dmapped_feat.hpp93 TRange GetTotalRange(void) const in GetTotalRange() function in CMappedFeat
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/misc/discrepancy/
H A Dtransl_too_long.cpp56 int length = (*code_break)->GetLoc().GetTotalRange().GetLength();
H A Dtransl_note.cpp68 int length = (*code_break)->GetLoc().GetTotalRange().GetLength(); in InspectSeqFeat()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/sequence/unit_test/
H A Dunit_test_align_cleanup.cpp77 BOOST_CHECK(intersection->GetTotalRange().GetLength()==0); in check_no_overlaps()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/data_loaders/vdbgraph/test/
H A Dtest_vdbgraph_loader.cpp123 CRange<TSeqPos> range = loc.GetTotalRange(); in s_CheckFast()
205 CRange<TSeqPos> range = loc.GetTotalRange(); in s_CheckFast()
306 CRange<TSeqPos> range = loc.GetTotalRange(); in BOOST_AUTO_TEST_CASE()
/dports/www/qt5-webengine/qtwebengine-everywhere-src-5.15.2/src/3rdparty/chromium/third_party/perfetto/src/protozero/
H A Dscattered_heap_buffer.cc69 return slices_.back().GetTotalRange(); in GetNewBuffer()
/dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/perfetto/src/protozero/
H A Dscattered_heap_buffer.cc69 return slices_.back().GetTotalRange(); in GetNewBuffer()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objmgr/split/
H A Did_range.hpp81 TRange GetTotalRange(void) const in GetTotalRange() function in COneSeqRange
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objmgr/split/
H A Did_range.hpp81 TRange GetTotalRange(void) const in GetTotalRange() function in COneSeqRange
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/test/objmgr/
H A Dtest_feat_tree.cpp128 range = child.GetLocation().GetTotalRange(); in s_GetFeatureKey()
175 out << feat.GetLocation().GetTotalRange(); in s_PrintTree()

123456