/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/util/ |
H A D | feature_edit.cpp | 52 CRange<TSeqPos> cb_range = code_break->GetLoc().GetTotalRange(); in operator ()() 64 if (code_break.GetLoc().GetTotalRange().IntersectionWith(range).NotEmpty()) in Apply() 72 const TSeqPos cb_to = code_break.GetLoc().GetTotalRange().GetTo(); in Apply() 80 const TSeqPos cb_from = code_break.GetLoc().GetTotalRange().GetFrom(); in Apply() 94 if (trna_ext.GetAnticodon().GetTotalRange().IntersectionWith(range).NotEmpty()) in Apply() 164 const TSeqPos cb_to = code_break->GetLoc().GetTotalRange().GetTo(); in Apply() 172 const TSeqPos cb_from = code_break->GetLoc().GetTotalRange().GetFrom(); in Apply() 343 CRange<TSeqPos> feat_range = feat.GetLocation().GetTotalRange(); in x_GetStartOffset() 435 CRange<TSeqPos> ac_range = ext.GetAnticodon().GetTotalRange(); in x_TrimTrnaExt()
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H A D | weight.cpp | 149 if (loc.GetTotalRange().GetFrom() > 0 || in GetProteinWeight() 150 loc.GetTotalRange().GetLength() < bsh.GetBioseqLength()) { in GetProteinWeight() 225 (location->GetTotalRange().GetFrom() > 0 || in GetProteinWeight() 226 location->GetTotalRange().GetLength() < handle.GetBioseqLength())) { in GetProteinWeight() 342 interval.SetFrom(signal->GetTotalRange().GetTo() + 1); in GetProteinWeights()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/util/ |
H A D | feature_edit.cpp | 52 CRange<TSeqPos> cb_range = code_break->GetLoc().GetTotalRange(); in operator ()() 64 if (code_break.GetLoc().GetTotalRange().IntersectionWith(range).NotEmpty()) in Apply() 72 const TSeqPos cb_to = code_break.GetLoc().GetTotalRange().GetTo(); in Apply() 80 const TSeqPos cb_from = code_break.GetLoc().GetTotalRange().GetFrom(); in Apply() 94 if (trna_ext.GetAnticodon().GetTotalRange().IntersectionWith(range).NotEmpty()) in Apply() 164 const TSeqPos cb_to = code_break->GetLoc().GetTotalRange().GetTo(); in Apply() 172 const TSeqPos cb_from = code_break->GetLoc().GetTotalRange().GetFrom(); in Apply() 343 CRange<TSeqPos> feat_range = feat.GetLocation().GetTotalRange(); in x_GetStartOffset() 435 CRange<TSeqPos> ac_range = ext.GetAnticodon().GetTotalRange(); in x_TrimTrnaExt()
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H A D | weight.cpp | 149 if (loc.GetTotalRange().GetFrom() > 0 || in GetProteinWeight() 150 loc.GetTotalRange().GetLength() < bsh.GetBioseqLength()) { in GetProteinWeight() 225 (location->GetTotalRange().GetFrom() > 0 || in GetProteinWeight() 226 location->GetTotalRange().GetLength() < handle.GetBioseqLength())) { in GetProteinWeight() 342 interval.SetFrom(signal->GetTotalRange().GetTo() + 1); in GetProteinWeights()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/ |
H A D | mapped_feat.cpp | 203 m_MappingInfoPtr->GetTotalRange(): in GetRange() 221 m_MappingInfoPtr->GetTotalRange(): in GetProductTotalRange()
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H A D | seq_feat_handle.cpp | 299 return GetSeq_feat()->GetLocation().GetTotalRange(); in GetRange() 307 return GetSeq_feat()->GetLocation().GetTotalRange(); in GetRange() 328 return GetProduct().GetTotalRange(); in GetProductTotalRange()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/ |
H A D | mapped_feat.cpp | 203 m_MappingInfoPtr->GetTotalRange(): in GetRange() 221 m_MappingInfoPtr->GetTotalRange(): in GetProductTotalRange()
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H A D | seq_feat_handle.cpp | 299 return GetSeq_feat()->GetLocation().GetTotalRange(); in GetRange() 307 return GetSeq_feat()->GetLocation().GetTotalRange(); in GetRange() 328 return GetProduct().GetTotalRange(); in GetProductTotalRange()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/util/ |
H A D | patch_sequence.cpp | 141 : (*delta_it)->GetLoc().GetTotalRange().GetLength(); in s_ProcessIntraScaffoldTail() 188 current_pos -= (*delta_it)->GetLoc().GetTotalRange().GetLength(); in s_ProcessIntraScaffoldTail() 291 next_pos += target_loc.GetTotalRange().GetLength(); in PatchTargetSequence() 392 : (*it)->GetLoc().GetTotalRange().GetLength(); in PatchTargetSequence()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/split/ |
H A D | id_range.cpp | 73 Add(range.GetTotalRange()); in BEGIN_SCOPE() 111 TRange range = it->second.GetTotalRange(); in Print() 434 auto r1 = i1->second.GetTotalRange(); in Compare() 435 auto r2 = i2->second.GetTotalRange(); in Compare()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/split/ |
H A D | id_range.cpp | 73 Add(range.GetTotalRange()); in BEGIN_SCOPE() 111 TRange range = it->second.GetTotalRange(); in Print() 434 auto r1 = i1->second.GetTotalRange(); in Compare() 435 auto r2 = i2->second.GetTotalRange(); in Compare()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/sequence/ |
H A D | annot_compare.cpp | 120 TSeqRange range1 = loc1.GetTotalRange(); in CompareFeats() 121 TSeqRange range2 = loc2.GetTotalRange(); in CompareFeats()
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H A D | util.cpp | 90 TSeqRange range = loc.GetTotalRange(); in SeqLocToBioseq() 126 TSeqRange range = loc.GetTotalRange(); in SeqLocToBioseq()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/validator/ |
H A D | validerror_graph.cpp | 242 if ( (int)loc.GetTotalRange().GetFrom() <= last_loc ) { in ValidateGraphsOnBioseq() 246 last_loc = loc.GetTotalRange().GetTo(); in ValidateGraphsOnBioseq() 512 TSeqPos from = graph_loc.GetTotalRange().GetFrom(); in x_ValidateGraphOnDeltaBioseq() 513 TSeqPos to = graph_loc.GetTotalRange().GetTo(); in x_ValidateGraphOnDeltaBioseq()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objmgr/ |
H A D | mapped_feat.hpp | 93 TRange GetTotalRange(void) const in GetTotalRange() function in CMappedFeat
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objmgr/ |
H A D | mapped_feat.hpp | 93 TRange GetTotalRange(void) const in GetTotalRange() function in CMappedFeat
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/misc/discrepancy/ |
H A D | transl_too_long.cpp | 56 int length = (*code_break)->GetLoc().GetTotalRange().GetLength();
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H A D | transl_note.cpp | 68 int length = (*code_break)->GetLoc().GetTotalRange().GetLength(); in InspectSeqFeat()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/sequence/unit_test/ |
H A D | unit_test_align_cleanup.cpp | 77 BOOST_CHECK(intersection->GetTotalRange().GetLength()==0); in check_no_overlaps()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/data_loaders/vdbgraph/test/ |
H A D | test_vdbgraph_loader.cpp | 123 CRange<TSeqPos> range = loc.GetTotalRange(); in s_CheckFast() 205 CRange<TSeqPos> range = loc.GetTotalRange(); in s_CheckFast() 306 CRange<TSeqPos> range = loc.GetTotalRange(); in BOOST_AUTO_TEST_CASE()
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/dports/www/qt5-webengine/qtwebengine-everywhere-src-5.15.2/src/3rdparty/chromium/third_party/perfetto/src/protozero/ |
H A D | scattered_heap_buffer.cc | 69 return slices_.back().GetTotalRange(); in GetNewBuffer()
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/dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/perfetto/src/protozero/ |
H A D | scattered_heap_buffer.cc | 69 return slices_.back().GetTotalRange(); in GetNewBuffer()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objmgr/split/ |
H A D | id_range.hpp | 81 TRange GetTotalRange(void) const in GetTotalRange() function in COneSeqRange
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objmgr/split/ |
H A D | id_range.hpp | 81 TRange GetTotalRange(void) const in GetTotalRange() function in COneSeqRange
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/test/objmgr/ |
H A D | test_feat_tree.cpp | 128 range = child.GetLocation().GetTotalRange(); in s_GetFeatureKey() 175 out << feat.GetLocation().GetTotalRange(); in s_PrintTree()
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