Searched refs:HITCOUNT_LEN (Results 1 – 3 of 3) sorted by relevance
677 hitCounts=(outduk==null ? null : new long[HITCOUNT_LEN+1]); in BBDuk2()2572 if(hitCountsT!=null){hitCountsT[Tools.min(found, HITCOUNT_LEN)]++;} in countSetKmers()2648 if(hitCountsT!=null){hitCountsT[Tools.min(found, HITCOUNT_LEN)]++;} in findBestMatch()2742 if(hitCountsT!=null){hitCountsT[Tools.min(found, HITCOUNT_LEN)]++;} in countSetKmersBig()3685 public static final int HITCOUNT_LEN=1000; field in BBDuk2
834 hitCounts=(outduk==null ? null : new long[HITCOUNT_LEN+1]); in BBDuk()3334 if(hitCountsT!=null){hitCountsT[Tools.min(found, HITCOUNT_LEN)]++;} in countSetKmers()3396 if(hitCountsT!=null){hitCountsT[Tools.min(found, HITCOUNT_LEN)]++;} in countCoveredBases()3466 if(hitCountsT!=null){hitCountsT[Tools.min(found, HITCOUNT_LEN)]++;} in findBestMatch()3554 if(hitCountsT!=null){hitCountsT[Tools.min(found, HITCOUNT_LEN)]++;} in countSetKmersBig()4980 public static final int HITCOUNT_LEN=1000; local
3086 public static final int HITCOUNT_LEN=1000; local