Searched refs:HIT_FRACTION_TO_RETAIN (Results 1 – 10 of 10) sorted by relevance
547 outstream.println("HIT_FRACTION_TO_RETAIN:\t"+BBIndexPacBioSkimmer.HIT_FRACTION_TO_RETAIN); in printSettings()
548 outstream.println("HIT_FRACTION_TO_RETAIN:\t"+BBIndexPacBio.HIT_FRACTION_TO_RETAIN); in printSettings()
578 outstream.println("HIT_FRACTION_TO_RETAIN:\t"+BBIndex.HIT_FRACTION_TO_RETAIN); in printSettings()
559 outstream.println("HIT_FRACTION_TO_RETAIN:\t"+BBIndex5.HIT_FRACTION_TO_RETAIN); in printSettings()
559 outstream.println("HIT_FRACTION_TO_RETAIN:\t"+BBIndexAcc.HIT_FRACTION_TO_RETAIN); in printSettings()
539 int maxLists=Tools.max((int)(HIT_FRACTION_TO_RETAIN*keysP.length), MIN_HIT_LISTS_TO_RETAIN);550 int cutoffIndex=((int) (HIT_FRACTION_TO_RETAIN*(keysP.length)-0.01f))+(keysP.length-numHits);2201 static final float HIT_FRACTION_TO_RETAIN=.97f; //default: .85
445 int maxLists=Tools.max((int)(HIT_FRACTION_TO_RETAIN*keysP.length), MIN_HIT_LISTS_TO_RETAIN);456 int cutoffIndex=((int) (HIT_FRACTION_TO_RETAIN*(keysP.length)-0.01f))+(keysP.length-numHits);2560 static final float HIT_FRACTION_TO_RETAIN=0.85f; //default: .8 local
446 int maxLists=Tools.max((int)(HIT_FRACTION_TO_RETAIN*keysP.length), MIN_HIT_LISTS_TO_RETAIN);457 int cutoffIndex=((int) (HIT_FRACTION_TO_RETAIN*(keysP.length)-0.01f))+(keysP.length-numHits);2533 static final float HIT_FRACTION_TO_RETAIN=.97f; //default: .85 field in BBIndexPacBio
539 int maxLists=Tools.max((int)(HIT_FRACTION_TO_RETAIN*keysP.length), MIN_HIT_LISTS_TO_RETAIN);550 int cutoffIndex=((int) (HIT_FRACTION_TO_RETAIN*(keysP.length)-0.01f))+(keysP.length-numHits);2728 static final float HIT_FRACTION_TO_RETAIN=0.85f; //default: .85 local
461 int maxLists=Tools.max((int)(HIT_FRACTION_TO_RETAIN*keysP.length), MIN_HIT_LISTS_TO_RETAIN);477 int cutoffIndex=((int) (HIT_FRACTION_TO_RETAIN*(keysP.length)-0.01f))+(keysP.length-numHits);3254 static final float HIT_FRACTION_TO_RETAIN=0.85f; //default: .8 local