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Searched refs:HitList (Results 1 – 25 of 138) sorted by relevance

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/dports/biology/wise/wise2.4.1/src/dynlibsrc/
H A Dhitlist.h82 #define HitList Wise2_HitList macro
119 void Wise2_sort_HitList_by_score(HitList * hl);
250 void Wise2_write_alb_HitList(HitList * hl,FILE * ofp);
263 void Wise2_write_XML_HitList(HitList * hl,FILE * ofp);
509 int Wise2_flush_HitList(HitList * obj);
522 HitList * Wise2_HitList_alloc_std(void);
536 HitList * Wise2_HitList_alloc_len(int len);
551 HitList * Wise2_hard_link_HitList(HitList * obj);
564 HitList * Wise2_HitList_alloc(void);
579 HitList * Wise2_free_HitList(HitList * obj);
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H A Dhitlist.c15 void sort_HitList_by_score(HitList * hl) in sort_HitList_by_score()
83 HitList * out; in HitList_from_LinearHSPmanager()
299 void write_alb_HitList(HitList * hl,FILE * ofp) in write_alb_HitList()
324 void write_XML_HitList(HitList * hl,FILE * ofp) in write_XML_HitList()
1229 int flush_HitList(HitList * obj) in flush_HitList()
1256 HitList * HitList_alloc_std(void) in HitList_alloc_std()
1272 HitList * HitList_alloc_len(int len) in HitList_alloc_len()
1307 HitList * hard_link_HitList(HitList * obj) in hard_link_HitList()
1327 HitList * HitList_alloc(void) in HitList_alloc()
1333 if((out=(HitList *) ckalloc (sizeof(HitList))) == NULL) { in HitList_alloc()
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H A Dhitlist.dy43 struct HitList
59 void sort_HitList_by_score(HitList * hl)
98 Converts a LinearHSPmanager into a HitList
100 HitList * HitList_from_LinearHSPmanager(LinearHSPmanager * lm)
102 HitList * out;
230 Shows help for HitList output
243 void show_HitList_HitListOutputImpl(HitListOutputImpl * hloi,HitList * hl,FILE * ofp)
268 void write_alb_HitList(HitList * hl,FILE * ofp)
286 void write_XML_HitList(HitList * hl,FILE * ofp)
338 void write_tab_HitList(HitList * hl,FILE * ofp)
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/dports/graphics/qt5-3d/kde-qt3d-5.15.2p39/src/render/jobs/
H A Dpickboundingvolumeutils_p.h105 typedef QVector<RayCasting::QCollisionQueryResult::Hit> HitList; typedef
116 inline HitList hits() const { return m_hits; } in hits()
122 HitList m_hits;
144 typedef HitList result_type;
145 HitList operator ()(const Entity *entity) const;
146 virtual HitList pick(const Entity *entity) const = 0;
149 static void sortHits(HitList &results);
155 HitList pick(const Entity *entity) const override;
164 HitList pick(const Entity *entity) const override;
172 HitList pick(const Entity *entity) const override;
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H A Dpickboundingvolumeutils.cpp160 HitList hits;
225 HitList hits;
346 HitList hits;
394 HitList reduceToFirstHit(HitList &result, const HitList &intermediate) in reduceToFirstHit()
420 HitList operator()(HitList &result, const HitList &intermediate) in operator ()()
453 HitList reduceToAllHits(HitList &results, const HitList &intermediate) in reduceToAllHits()
530 std::function<HitList (HitList &, const HitList &)> reducerOp; in computeHits()
557 HitList result; in pick()
570 std::function<HitList (HitList &, const HitList &)> reducerOp; in computeHits()
617 std::function<HitList (HitList &, const HitList &)> reducerOp; in computeHits()
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H A Draycastingjob_p.h69 typedef QVector<RayCasting::QCollisionQueryResult::Hit> HitList; typedef
83 void dispatchHits(RayCaster *rayCaster, const PickingUtils::HitList &sphereHits);
H A Dpickboundingvolumejob_p.h77 typedef QVector<RayCasting::QCollisionQueryResult::Hit> HitList; typedef
98 const PickingUtils::HitList &sphereHits,
/dports/mail/mailscanner/MailScanner-5.3.4/usr/share/MailScanner/perl/MailScanner/
H A DRBLs.pm81 my ( @HitList, $Checked, $HitOrMiss );
224 push @HitList, $Checked if $HitOrMiss eq 'Hit';
315 $message->{id}, join( ', ', @HitList ) )
316 if @HitList && MailScanner::Config::Value('logspam');
323 my $temp = @HitList;
325 $temp = 0 unless $HitList[0] =~ /[a-z]/i;
326 return ( $temp, join( ', ', @HitList ) );
H A DSA.pm899 $HitList = "";
901 $HitList .= ($HitList?', ':'') . $Hit . ' ' .
932 print $pipe $HitList . "\n";
935 $HitList =~ tr/\n/\0/;
936 print $pipe $HitList . "\n";
1148 $HitList = "";
1150 $HitList .= ($HitList?', ':'') . $Hit . ' ' .
1172 $SAHitList = $HitList;
1174 $HitList = $spamness->get_report();
1175 $HitList =~ tr/\n/\0/;
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H A DMCP.pm291 my($spamness, $SAResult, $HitList, @HitNames, $Hit);
307 $HitList = $spamness->get_names_of_tests_hit();
309 @HitNames = split(/\s*,\s*/, $HitList);
310 $HitList = "";
312 $HitList .= ($HitList?', ':'') . $Hit . ' ' .
316 print $pipe $HitList . "\n";
/dports/www/grafana8/grafana-8.3.6/pkg/services/search/
H A Dhits.go31 type HitList []*Hit type
33 func (s HitList) Len() int { return len(s) }
34 func (s HitList) Swap(i, j int) { s[i], s[j] = s[j], s[i] }
35 func (s HitList) Less(i, j int) bool {
H A Dservice.go40 Result HitList
59 Result HitList
105 func sortedHits(unsorted HitList) HitList { argument
106 hits := make(HitList, 0)
/dports/graphics/rayshade/rayshade.4.0/libray/libobj/
H A Dcsg.c88 HitList *hit1, *hit2;
123 HitList *hitp; in csg_enter_obj()
135 HitList *hit1p, *hit2p, **hitclose;
139 HitList hitnext, *hittmp;
181 HitList *hit1p, *hit2p, **hitclose;
184 HitList *hittmp, hitnext;
225 HitList *hit1p, *hit2p, **hitclose;
229 HitList hitnext;
298 HitList *hitlist;
344 HitList *from, *to; in CsgHitlistCopy()
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H A Dgeom.h124 typedef struct HitList { struct
127 } HitList; argument
H A Dintersect.c40 HitList *hitlist; /* Intersection path */
135 HitList *hitlist; in AddToHitList()
/dports/graphics/embree/embree-3.13.2/tutorials/next_hit/
H A Dnext_hit_device.cpp37 struct HitList struct
39 HitList () in HitList() argument
114 IntersectContext(HitList& hits) in IntersectContext()
118 HitList& hits;
138 HitList& hits = context->hits; in gather_all_hits()
156 void single_pass(const Ray& ray_i, HitList& hits_o, RandomSampler& sampler, RayStats& stats) in single_pass()
206 HitList& hits = context->hits; in gather_next_hits()
219 HitList::Hit nhit(opaque, ray->tfar,hit->primID,hit->geomID,hit->instID[0]); in gather_next_hits()
275 context.hits.hits[context.hits.begin+i] = HitList::Hit(false,neg_inf); in multi_pass()
317 HitList hits; in renderPixelStandard()
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/dports/biology/wise/wise2.4.1/src/models/
H A Dhsp2aln_sw.h26 HitList * output;
286 HitList * Wise2_HitList_from_LinearHSPmanager_heuristic_threaded(LinearHSPmanager * lm,DPRunImpl * …
290 HitList * Wise2_HitList_from_LinearHSPmanager_heuristic_threaded(LinearHSPmanager * lm,DPRunImpl * …
292 HitList * Wise2_HitList_from_LinearHSPmanager_heuristic(LinearHSPmanager * lm,DPRunImpl * dpri,HSPs…
H A Dscanwisep.c296 HitList * hl;
322 HitList * HitList_from_LinearHSPmanager_sw(LinearHSPmanager * lm,DPRunImpl * dpri) in HitList_from_LinearHSPmanager_sw()
324 HitList * out; in HitList_from_LinearHSPmanager_sw()
371 HitList * HitList_from_HSP_HSP2HitListImpl(HSP2HitListImpl * conv,LinearHSPmanager * lm,DPRunImpl *… in HitList_from_HSP_HSP2HitListImpl()
373 HitList * processed = NULL; in HitList_from_HSP_HSP2HitListImpl()
374 HitList * temp; in HitList_from_HSP_HSP2HitListImpl()
491 HitList * hl; in main()
/dports/biology/hhsuite/hh-suite-3.3.0/src/
H A Dhhhitlist.cpp15 void HitList::PrintHitList(HMM* q, std::stringstream& out, in PrintHitList()
98 void HitList::PrintHitList(HMM* q, char* outfile, in PrintHitList()
140 void HitList::PrintHHR(HMM* q, std::stringstream& out, in PrintHHR()
179 void HitList::PrintAlignments(HMM* q, std::stringstream& out, in PrintAlignments()
228 void HitList::PrintScoreFile(HMM* q, char* outputfile) { in PrintScoreFile()
325 void HitList::PrintScoreFile(HMM* q, std::stringstream& outbuffer) { in PrintScoreFile()
375 void HitList::WriteToAlifile(HMM* q, char* alitabfile, in WriteToAlifile()
397 void HitList::WriteToAlifile(HMM* q, std::stringstream& out, in WriteToAlifile()
462 void HitList::CalculateHHblitsEvalues(HMM* q, const int dbsize, in CalculateHHblitsEvalues()
496 void HitList::CalculatePvalues(HMM* q, const char loc, const char ssm, in CalculatePvalues()
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H A Dhhhitlist.h28 class HitList : public List<Hit>
38 HitList() {blast_logPvals=NULL;} in HitList() function
39 ~HitList() {if (blast_logPvals) delete blast_logPvals;} in ~HitList()
H A Dhhblits.h152 HitList hitlist; // list of hits with one Hit object for each pairwise comparison done
154 …void mergeHitsToQuery(HitList &hitlist, Hash<Hit>* previous_hits, Hash<Hit>* premerged_hits, int& …
158 void add_hits_to_hitlist(std::vector<Hit>& hits, HitList& hitlist);
/dports/biology/clustal-omega/clustal-omega-1.2.4/src/hhalign/
H A Dhhhitlist.h27 class HitList : public List<Hit>
41 HitList() {blast_logPvals=NULL;} in HitList() function
42 ~HitList() {if (blast_logPvals) delete blast_logPvals;} in ~HitList()
H A Dhhhitlist-C.h158 HitList::PrintAlignments( in PrintAlignments()
305 HitList::PrintScoreFile(HMM& q) in PrintScoreFile()
410 HitList* mySelf = (HitList*) pt2hitlist; // explicitly cast to a pointer to Hitlist in RankOrderFitCorr_static()
439 HitList* mySelf = (HitList*) pt2hitlist; // explicitly cast to a pointer to Hitlist in LogLikelihoodCorr_static()
468 HitList* mySelf = (HitList*) pt2hitlist; // explicitly cast to a pointer to Hitlist in LogLikelihoodEVD_static()
1233 HitList::TransitiveScoring() in TransitiveScoring()
1598 HitList::TransitiveScoring2() in TransitiveScoring2()
1968 HitList::TransitiveScoring3() in TransitiveScoring3()
2333 HitList::TransitiveScoring4() in TransitiveScoring4()
2662 HitList::Score2Z(double S) in Score2Z()
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/dports/biology/ncbi-toolkit/ncbi/data/
H A Dblast.prt19 asn1 "BLAST0-HitList" ,
25 asn1 "BLAST0-HitList.hsps.E" ,
31 asn1 "BLAST0-HitList.seqs.E" ,
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/ms/omssa/
H A Domssa.cpp1900 TMSHitList& HitList = Peaks->GetHitList(iCharges); in CalcNSort() local
1904 int tempMass = HitList[iHitList].GetExpMass(); in CalcNSort()
1905 int Charge = HitList[iHitList].GetCharge(); in CalcNSort()
1924 MatchAndSort(Peaks, HitList[iHitList], Which, minintensity, in CalcNSort()
1928 MatchAndSort(Peaks, HitList[iHitList], Which, minintensity, in CalcNSort()
1949 double adjust = HitList[iHitList].GetMaxDelta() / in CalcNSort()
1976 if (HitList[iHitList].GetHits() < a) continue; in CalcNSort()
1996 …pval = HitList[iHitList].CalcPvalue(a, HitList[iHitList].CountHits(Threshold, Peaks->GetMaxI(Which… in CalcNSort()
1999 if (HitList[iHitList].GetM() != 0.0) { in CalcNSort()
2000 double Perf = HitList[iHitList].CalcRankProb(); in CalcNSort()
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