/dports/biology/wise/wise2.4.1/src/dynlibsrc/ |
H A D | hitlist.h | 82 #define HitList Wise2_HitList macro 119 void Wise2_sort_HitList_by_score(HitList * hl); 250 void Wise2_write_alb_HitList(HitList * hl,FILE * ofp); 263 void Wise2_write_XML_HitList(HitList * hl,FILE * ofp); 509 int Wise2_flush_HitList(HitList * obj); 522 HitList * Wise2_HitList_alloc_std(void); 536 HitList * Wise2_HitList_alloc_len(int len); 551 HitList * Wise2_hard_link_HitList(HitList * obj); 564 HitList * Wise2_HitList_alloc(void); 579 HitList * Wise2_free_HitList(HitList * obj); [all …]
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H A D | hitlist.c | 15 void sort_HitList_by_score(HitList * hl) in sort_HitList_by_score() 83 HitList * out; in HitList_from_LinearHSPmanager() 299 void write_alb_HitList(HitList * hl,FILE * ofp) in write_alb_HitList() 324 void write_XML_HitList(HitList * hl,FILE * ofp) in write_XML_HitList() 1229 int flush_HitList(HitList * obj) in flush_HitList() 1256 HitList * HitList_alloc_std(void) in HitList_alloc_std() 1272 HitList * HitList_alloc_len(int len) in HitList_alloc_len() 1307 HitList * hard_link_HitList(HitList * obj) in hard_link_HitList() 1327 HitList * HitList_alloc(void) in HitList_alloc() 1333 if((out=(HitList *) ckalloc (sizeof(HitList))) == NULL) { in HitList_alloc() [all …]
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H A D | hitlist.dy | 43 struct HitList 59 void sort_HitList_by_score(HitList * hl) 98 Converts a LinearHSPmanager into a HitList 100 HitList * HitList_from_LinearHSPmanager(LinearHSPmanager * lm) 102 HitList * out; 230 Shows help for HitList output 243 void show_HitList_HitListOutputImpl(HitListOutputImpl * hloi,HitList * hl,FILE * ofp) 268 void write_alb_HitList(HitList * hl,FILE * ofp) 286 void write_XML_HitList(HitList * hl,FILE * ofp) 338 void write_tab_HitList(HitList * hl,FILE * ofp) [all …]
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/dports/graphics/qt5-3d/kde-qt3d-5.15.2p39/src/render/jobs/ |
H A D | pickboundingvolumeutils_p.h | 105 typedef QVector<RayCasting::QCollisionQueryResult::Hit> HitList; typedef 116 inline HitList hits() const { return m_hits; } in hits() 122 HitList m_hits; 144 typedef HitList result_type; 145 HitList operator ()(const Entity *entity) const; 146 virtual HitList pick(const Entity *entity) const = 0; 149 static void sortHits(HitList &results); 155 HitList pick(const Entity *entity) const override; 164 HitList pick(const Entity *entity) const override; 172 HitList pick(const Entity *entity) const override; [all …]
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H A D | pickboundingvolumeutils.cpp | 160 HitList hits; 225 HitList hits; 346 HitList hits; 394 HitList reduceToFirstHit(HitList &result, const HitList &intermediate) in reduceToFirstHit() 420 HitList operator()(HitList &result, const HitList &intermediate) in operator ()() 453 HitList reduceToAllHits(HitList &results, const HitList &intermediate) in reduceToAllHits() 530 std::function<HitList (HitList &, const HitList &)> reducerOp; in computeHits() 557 HitList result; in pick() 570 std::function<HitList (HitList &, const HitList &)> reducerOp; in computeHits() 617 std::function<HitList (HitList &, const HitList &)> reducerOp; in computeHits() [all …]
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H A D | raycastingjob_p.h | 69 typedef QVector<RayCasting::QCollisionQueryResult::Hit> HitList; typedef 83 void dispatchHits(RayCaster *rayCaster, const PickingUtils::HitList &sphereHits);
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H A D | pickboundingvolumejob_p.h | 77 typedef QVector<RayCasting::QCollisionQueryResult::Hit> HitList; typedef 98 const PickingUtils::HitList &sphereHits,
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/dports/mail/mailscanner/MailScanner-5.3.4/usr/share/MailScanner/perl/MailScanner/ |
H A D | RBLs.pm | 81 my ( @HitList, $Checked, $HitOrMiss ); 224 push @HitList, $Checked if $HitOrMiss eq 'Hit'; 315 $message->{id}, join( ', ', @HitList ) ) 316 if @HitList && MailScanner::Config::Value('logspam'); 323 my $temp = @HitList; 325 $temp = 0 unless $HitList[0] =~ /[a-z]/i; 326 return ( $temp, join( ', ', @HitList ) );
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H A D | SA.pm | 899 $HitList = ""; 901 $HitList .= ($HitList?', ':'') . $Hit . ' ' . 932 print $pipe $HitList . "\n"; 935 $HitList =~ tr/\n/\0/; 936 print $pipe $HitList . "\n"; 1148 $HitList = ""; 1150 $HitList .= ($HitList?', ':'') . $Hit . ' ' . 1172 $SAHitList = $HitList; 1174 $HitList = $spamness->get_report(); 1175 $HitList =~ tr/\n/\0/; [all …]
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H A D | MCP.pm | 291 my($spamness, $SAResult, $HitList, @HitNames, $Hit); 307 $HitList = $spamness->get_names_of_tests_hit(); 309 @HitNames = split(/\s*,\s*/, $HitList); 310 $HitList = ""; 312 $HitList .= ($HitList?', ':'') . $Hit . ' ' . 316 print $pipe $HitList . "\n";
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/dports/www/grafana8/grafana-8.3.6/pkg/services/search/ |
H A D | hits.go | 31 type HitList []*Hit type 33 func (s HitList) Len() int { return len(s) } 34 func (s HitList) Swap(i, j int) { s[i], s[j] = s[j], s[i] } 35 func (s HitList) Less(i, j int) bool {
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H A D | service.go | 40 Result HitList 59 Result HitList 105 func sortedHits(unsorted HitList) HitList { argument 106 hits := make(HitList, 0)
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/dports/graphics/rayshade/rayshade.4.0/libray/libobj/ |
H A D | csg.c | 88 HitList *hit1, *hit2; 123 HitList *hitp; in csg_enter_obj() 135 HitList *hit1p, *hit2p, **hitclose; 139 HitList hitnext, *hittmp; 181 HitList *hit1p, *hit2p, **hitclose; 184 HitList *hittmp, hitnext; 225 HitList *hit1p, *hit2p, **hitclose; 229 HitList hitnext; 298 HitList *hitlist; 344 HitList *from, *to; in CsgHitlistCopy() [all …]
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H A D | geom.h | 124 typedef struct HitList { struct 127 } HitList; argument
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H A D | intersect.c | 40 HitList *hitlist; /* Intersection path */ 135 HitList *hitlist; in AddToHitList()
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/dports/graphics/embree/embree-3.13.2/tutorials/next_hit/ |
H A D | next_hit_device.cpp | 37 struct HitList struct 39 HitList () in HitList() argument 114 IntersectContext(HitList& hits) in IntersectContext() 118 HitList& hits; 138 HitList& hits = context->hits; in gather_all_hits() 156 void single_pass(const Ray& ray_i, HitList& hits_o, RandomSampler& sampler, RayStats& stats) in single_pass() 206 HitList& hits = context->hits; in gather_next_hits() 219 HitList::Hit nhit(opaque, ray->tfar,hit->primID,hit->geomID,hit->instID[0]); in gather_next_hits() 275 context.hits.hits[context.hits.begin+i] = HitList::Hit(false,neg_inf); in multi_pass() 317 HitList hits; in renderPixelStandard() [all …]
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/dports/biology/wise/wise2.4.1/src/models/ |
H A D | hsp2aln_sw.h | 26 HitList * output; 286 HitList * Wise2_HitList_from_LinearHSPmanager_heuristic_threaded(LinearHSPmanager * lm,DPRunImpl * … 290 HitList * Wise2_HitList_from_LinearHSPmanager_heuristic_threaded(LinearHSPmanager * lm,DPRunImpl * … 292 HitList * Wise2_HitList_from_LinearHSPmanager_heuristic(LinearHSPmanager * lm,DPRunImpl * dpri,HSPs…
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H A D | scanwisep.c | 296 HitList * hl; 322 HitList * HitList_from_LinearHSPmanager_sw(LinearHSPmanager * lm,DPRunImpl * dpri) in HitList_from_LinearHSPmanager_sw() 324 HitList * out; in HitList_from_LinearHSPmanager_sw() 371 HitList * HitList_from_HSP_HSP2HitListImpl(HSP2HitListImpl * conv,LinearHSPmanager * lm,DPRunImpl *… in HitList_from_HSP_HSP2HitListImpl() 373 HitList * processed = NULL; in HitList_from_HSP_HSP2HitListImpl() 374 HitList * temp; in HitList_from_HSP_HSP2HitListImpl() 491 HitList * hl; in main()
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/dports/biology/hhsuite/hh-suite-3.3.0/src/ |
H A D | hhhitlist.cpp | 15 void HitList::PrintHitList(HMM* q, std::stringstream& out, in PrintHitList() 98 void HitList::PrintHitList(HMM* q, char* outfile, in PrintHitList() 140 void HitList::PrintHHR(HMM* q, std::stringstream& out, in PrintHHR() 179 void HitList::PrintAlignments(HMM* q, std::stringstream& out, in PrintAlignments() 228 void HitList::PrintScoreFile(HMM* q, char* outputfile) { in PrintScoreFile() 325 void HitList::PrintScoreFile(HMM* q, std::stringstream& outbuffer) { in PrintScoreFile() 375 void HitList::WriteToAlifile(HMM* q, char* alitabfile, in WriteToAlifile() 397 void HitList::WriteToAlifile(HMM* q, std::stringstream& out, in WriteToAlifile() 462 void HitList::CalculateHHblitsEvalues(HMM* q, const int dbsize, in CalculateHHblitsEvalues() 496 void HitList::CalculatePvalues(HMM* q, const char loc, const char ssm, in CalculatePvalues() [all …]
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H A D | hhhitlist.h | 28 class HitList : public List<Hit> 38 HitList() {blast_logPvals=NULL;} in HitList() function 39 ~HitList() {if (blast_logPvals) delete blast_logPvals;} in ~HitList()
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H A D | hhblits.h | 152 HitList hitlist; // list of hits with one Hit object for each pairwise comparison done 154 …void mergeHitsToQuery(HitList &hitlist, Hash<Hit>* previous_hits, Hash<Hit>* premerged_hits, int& … 158 void add_hits_to_hitlist(std::vector<Hit>& hits, HitList& hitlist);
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/dports/biology/clustal-omega/clustal-omega-1.2.4/src/hhalign/ |
H A D | hhhitlist.h | 27 class HitList : public List<Hit> 41 HitList() {blast_logPvals=NULL;} in HitList() function 42 ~HitList() {if (blast_logPvals) delete blast_logPvals;} in ~HitList()
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H A D | hhhitlist-C.h | 158 HitList::PrintAlignments( in PrintAlignments() 305 HitList::PrintScoreFile(HMM& q) in PrintScoreFile() 410 HitList* mySelf = (HitList*) pt2hitlist; // explicitly cast to a pointer to Hitlist in RankOrderFitCorr_static() 439 HitList* mySelf = (HitList*) pt2hitlist; // explicitly cast to a pointer to Hitlist in LogLikelihoodCorr_static() 468 HitList* mySelf = (HitList*) pt2hitlist; // explicitly cast to a pointer to Hitlist in LogLikelihoodEVD_static() 1233 HitList::TransitiveScoring() in TransitiveScoring() 1598 HitList::TransitiveScoring2() in TransitiveScoring2() 1968 HitList::TransitiveScoring3() in TransitiveScoring3() 2333 HitList::TransitiveScoring4() in TransitiveScoring4() 2662 HitList::Score2Z(double S) in Score2Z() [all …]
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/dports/biology/ncbi-toolkit/ncbi/data/ |
H A D | blast.prt | 19 asn1 "BLAST0-HitList" , 25 asn1 "BLAST0-HitList.hsps.E" , 31 asn1 "BLAST0-HitList.seqs.E" ,
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/ms/omssa/ |
H A D | omssa.cpp | 1900 TMSHitList& HitList = Peaks->GetHitList(iCharges); in CalcNSort() local 1904 int tempMass = HitList[iHitList].GetExpMass(); in CalcNSort() 1905 int Charge = HitList[iHitList].GetCharge(); in CalcNSort() 1924 MatchAndSort(Peaks, HitList[iHitList], Which, minintensity, in CalcNSort() 1928 MatchAndSort(Peaks, HitList[iHitList], Which, minintensity, in CalcNSort() 1949 double adjust = HitList[iHitList].GetMaxDelta() / in CalcNSort() 1976 if (HitList[iHitList].GetHits() < a) continue; in CalcNSort() 1996 …pval = HitList[iHitList].CalcPvalue(a, HitList[iHitList].CountHits(Threshold, Peaks->GetMaxI(Which… in CalcNSort() 1999 if (HitList[iHitList].GetM() != 0.0) { in CalcNSort() 2000 double Perf = HitList[iHitList].CalcRankProb(); in CalcNSort() [all …]
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