Searched refs:IsCDS (Results 1 – 4 of 4) sorted by relevance
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/hgvs/ |
| H A D | post_process.cpp | 136 …eSeqLiteral(const CSeq_literal& literal, const CSeq_loc& location, CScope* scope, bool IsCDS=false) in s_ValidateSeqLiteral() argument
138 if (IsCDS) { in s_ValidateSeqLiteral()
161 …t::ValidateIdentityInst(const CVariation_inst& identity_inst, const CSeq_loc& location, bool IsCDS) in ValidateIdentityInst() argument
211 s_ValidateSeqLiteral(literal, location, &m_Scope, IsCDS); in ValidateIdentityInst()
217 …t::ValidateMicrosatelliteInst(const CVariation_inst& ms_inst, const CSeq_loc& location, bool IsCDS) in ValidateMicrosatelliteInst() argument
257 IsCDS); in ValidateMicrosatelliteInst()
262 void g_ValidateVariationSeqfeat(const CSeq_feat& feat, CScope* scope, bool IsCDS) in g_ValidateVariationSeqfeat() argument
278 validator.ValidateMicrosatelliteInst(var_inst, feat.GetLocation(), IsCDS); in g_ValidateVariationSeqfeat()
368 validator.ValidateIdentityInst(reference_inst, feat.GetLocation(), IsCDS); in g_ValidateVariationSeqfeat()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/readers/hgvs/ |
| H A D | post_process.hpp | 49 bool IsCDS=false);
53 bool IsCDS=false);
63 bool IsCDS=false);
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/hgvsreader/ |
| H A D | hgvsreader.cpp | 125 bool IsCDS = (seq_type == eVariantSeqType_c); in Run() local
127 g_ValidateVariationSeqfeat(*seq_feat, scope, IsCDS); in Run()
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| /dports/biology/ncbi-toolkit/ncbi/api/ |
| H A D | sqnutil4.c | 4999 || IsCDS (sfp) in IsRecognizedFeature()
5505 || (match == IsCDS in FindBestMatchCandidate()
5941 if ( ! IsCDS (sfp)) in GroupSegmentedCDSs()
6012 && (IsCDS (sfp) in AddGeneToClauses()
6035 && IsCDS (sfp)) in AddGeneToClauses()
6048 && IsCDS (sfp)) in AddGeneToClauses()
6122 else if (IsCDS (sfp) in AddmRNAToClauses()
6573 IsCDS, IsmRNA, IstRNA
6883 if (IsCDS (sfp)) in GetGenericInterval()
9071 if ( IsCDS (main_feat)) in ShouldRemoveExon()
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