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/dports/science/getdp/getdp-3.4.0-source/Common/
H A DListUtils.h14 class List_T {
25 void List_Delete(List_T *liste);
26 void List_Realloc(List_T *liste,int n);
28 int List_Nbr(List_T *liste);
36 void List_Pop(List_T *liste);
55 void List_Invert(List_T *a, List_T *b);
56 void List_Reset(List_T *liste);
58 void List_Copy(List_T *a , List_T *b);
59 List_T *List_Copy(List_T *src);
60 void List_Merge(List_T *a , List_T *b);
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H A DListUtils.cpp53 List_T *liste; in List_Create()
60 liste = (List_T *) Malloc(sizeof(List_T)); in List_Create()
73 void List_Delete(List_T * liste) in List_Delete()
108 int List_Nbr(List_T * liste) in List_Nbr()
146 void List_Pop(List_T * liste) in List_Pop()
247 void List_Invert(List_T * a, List_T * b) in List_Invert()
256 void List_Reset(List_T * liste) in List_Reset()
271 void List_Copy(List_T * a, List_T * b) in List_Copy()
280 List_T *ListOfDouble2ListOfInt(List_T *dList) in ListOfDouble2ListOfInt()
383 List_T *List_Copy(List_T *src) in List_Copy()
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/dports/biology/gmap/gmap-2020-09-12/src/
H A Dpairpool.h24 extern List_T
27 extern List_T
29 extern List_T
32 extern List_T
35 extern List_T
37 extern List_T
39 extern List_T
40 Pairpool_transfer (List_T dest, List_T source);
41 extern List_T
42 Pairpool_transfer_n (List_T dest, List_T source, int n);
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H A Dhitlistpool.c37 List_T chunks;
42 List_T p; in Hitlistpool_free_memory()
100 List_T
103 List_T listcell; in Hitlist_push_actual()
104 List_T p; in Hitlist_push_actual()
127 List_T
130 List_T p; in Hitlist_push()
155 List_T p; in Hitlist_free_actual()
172 List_T
174 List_T head; in Hitlist_pop()
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H A Dstage3hr.h73 extern List_T
77 extern List_T
115 extern List_T
117 extern List_T
147 extern List_T
149 extern List_T
186 extern List_T
265 extern List_T
267 extern List_T
287 extern List_T
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H A Dlistpool.c38 List_T chunks;
43 List_T p; in Listpool_free_memory()
69 static struct List_T *
73 chunk = (struct List_T *) MALLOC_KEEP(CHUNKSIZE*sizeof(struct List_T)); in add_new_chunk()
100 List_T
102 List_T listcell; in Listpool_push()
103 List_T p; in Listpool_push()
123 List_T
125 List_T head; in Listpool_pop()
137 List_T
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H A Dconcordance.h21 extern List_T
23 List_T *distant_hitpairs, List_T hitpairs,
25 List_T hitlist5_gplus, List_T hitlist5_gminus,
26 List_T hitlist3_gplus, List_T hitlist3_gminus,
39 extern List_T
41 List_T *samechr, List_T *conc_transloc, List_T hitpairs,
43 List_T hitlist5_gplus, List_T hitlist5_gminus,
44 List_T hitlist3_gplus, List_T hitlist3_gminus,
H A Dhitlistpool.h14 extern List_T
27 extern List_T
28 Hitlist_push (List_T list, T this, void *contents);
30 extern void Hitlist_free (List_T *old);
34 extern List_T
38 Hitlist_free (List_T *old) { in Hitlist_free()
39 *old = (List_T) NULL; in Hitlist_free()
54 extern List_T
55 Hitlist_pop (List_T list, void **contents);
56 extern List_T
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H A Dpair.h66 extern List_T
68 extern List_T
73 extern List_T
75 extern List_T
135 Pair_identical_p (List_T pairs1, List_T pairs2);
156 extern List_T
211 extern List_T
213 extern List_T
227 extern List_T
363 extern List_T
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H A Dtranscript.h32 Transcript_gc (List_T *list);
35 extern List_T
36 Transcript_copy_list (List_T old);
38 Transcript_in_list_p (T x, List_T list);
40 Transcript_print_nums (List_T list);
42 Transcript_print_list (List_T list);
46 Transcript_intersect_p (int *min_insertlength, List_T transcripts5, List_T transcripts3);
50 Transcript_concordant_p (List_T transcripts5, List_T transcripts3);
53 Transcript_singleend_print (Filestring_T fp, List_T transcripts, Univ_IIT_T transcript_iit,
57 Transcript_concordance_print (Filestring_T fp, List_T transcripts5, List_T transcripts3,
H A Ddistant-rna.h17 List_T *sense_hits_plus, List_T *sense_hits_minus,
18 List_T *antisense_hits_plus, List_T *antisense_hits_minus,
20 List_T *startfrags_plus, List_T *endfrags_plus,
21 List_T *startfrags_minus, List_T *endfrags_minus,
23 List_T queryfwd_plus_set, List_T queryfwd_minus_set,
24 List_T queryrev_plus_set, List_T queryrev_minus_set,
H A Dmatchpool.c36 List_T matchchunks;
52 List_T p; in Matchpool_free_memory()
159 List_T
162 List_T listcell; in Matchpool_push()
164 List_T p; in Matchpool_push()
220 List_T
223 List_T p; in Matchpool_push_existing()
249 List_T
251 List_T head; in Matchpool_pop()
263 List_T
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H A Ddiagpool.c41 List_T diagchunks;
46 List_T listcellchunks;
51 List_T p; in Diagpool_free_memory()
146 List_T
148 List_T listcell; in Diagpool_push()
150 List_T p; in Diagpool_push()
191 List_T
193 List_T head; in Diagpool_pop()
205 List_T
207 List_T listcell; in Diagpool_push_existing()
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H A Dpairpool.c179 List_T
261 List_T
304 List_T
374 List_T
455 List_T
503 List_T
526 List_T
554 List_T
605 List_T
644 List_T
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H A Dunivdiagpool.c44 List_T univdiagchunks;
54 List_T p; in Univdiagpool_free_memory()
152 List_T p; in Univdiag_new()
178 List_T
180 List_T listcell; in Univdiagpool_push()
182 List_T p; in Univdiagpool_push()
222 List_T
224 List_T head; in Univdiagpool_pop()
236 List_T
238 List_T listcell; in Univdiagpool_push_existing()
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H A Dkmer-search.h22 extern List_T
30 List_T *sense_hits_gplus, List_T *sense_hits_gminus,
31 List_T *antisense_hits_gplus, List_T *antisense_hits_gminus,
44 List_T *sense_hits_gplus, List_T *sense_hits_gminus,
45 List_T *antisense_hits_gplus, List_T *antisense_hits_gminus,
54 List_T *sense_hits_gplus, List_T *sense_hits_gminus,
55 List_T *antisense_hits_gplus, List_T *antisense_hits_gminus,
H A Dsplicestringpool.c43 List_T objectchunks;
48 List_T listcellchunks;
53 List_T p; in Splicestringpool_free_memory()
112 static struct List_T *
114 struct List_T *chunk; in add_new_listcellchunk()
116 chunk = (struct List_T *) MALLOC_KEEP(CHUNKSIZE*sizeof(struct List_T)); in add_new_listcellchunk()
150 List_T
153 List_T listcell; in Splicestringpool_push()
155 List_T p; in Splicestringpool_push()
195 List_T
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H A Dcellpool.c43 List_T objectchunks;
48 List_T listcellchunks;
53 List_T p; in Cellpool_free_memory()
111 static struct List_T *
113 struct List_T *chunk; in add_new_listcellchunk()
115 chunk = (struct List_T *) MALLOC_KEEP(CHUNKSIZE*sizeof(struct List_T)); in add_new_listcellchunk()
149 List_T
152 List_T listcell; in Cellpool_push()
154 List_T p; in Cellpool_push()
198 List_T
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H A Dsmooth.h8 Smooth_reset (List_T pairs);
9 extern List_T
10 Smooth_pairs_by_netgap (bool *deletep, List_T pairs, Pairpool_T pairpool);
11 extern List_T
12 Smooth_pairs_by_size (bool *shortp, bool *deletep, List_T pairs, Pairpool_T pairpool, int stage2_in…
13 extern List_T
14 Smooth_mark_short_exons (List_T pairs, Pairpool_T pairpool, int stage2_indexsize);
15 extern List_T
16 Smooth_pairs_by_intronprobs (bool *badp, List_T pairs, Pairpool_T pairpool);
/dports/cad/gmsh/gmsh-4.9.2-source/Common/
H A DListUtils.h9 class List_T {
20 void List_Delete(List_T *liste);
23 void List_Add(List_T *liste, int data);
24 int List_Nbr(List_T *liste);
28 void List_Pop(List_T *liste);
43 void List_Invert(List_T *a, List_T *b);
44 void List_Reset(List_T *liste);
46 void List_Copy(List_T *a, List_T *b);
47 void List_Remove(List_T *a, int i);
48 void List_Insert_In_List(List_T *a, int i, List_T *b);
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H A DListUtils.cpp48 List_T *liste; in List_Create()
53 liste = (List_T *)Malloc(sizeof(List_T)); in List_Create()
66 void List_Delete(List_T *liste) in List_Delete()
106 int List_Nbr(List_T *liste) in List_Nbr()
146 void List_Pop(List_T *liste) in List_Pop()
259 void List_Invert(List_T *a, List_T *b) in List_Invert()
269 void List_Reset(List_T *liste) in List_Reset()
283 void List_Copy(List_T *a, List_T *b) in List_Copy()
293 void List_Remove(List_T *a, int i) in List_Remove()
302 void List_Insert_In_List(List_T *a, int i, List_T *b) in List_Insert_In_List()
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/dports/science/getdp/getdp-3.4.0-source/Kernel/
H A DExtendedGroup.h14 void Generate_ElementaryEntities(List_T * InitialList, List_T ** ExtendedList,
16 void Generate_GroupsOfNodes(List_T * InitialList, List_T ** ExtendedList) ;
17 void Generate_GroupsOfEdges(List_T * InitialList, int Type_SuppList,
18 List_T * InitialSuppList, List_T ** ExtendedList) ;
19 void Generate_GroupsOfFacets(List_T * InitialList, List_T ** ExtendedList) ;
20 void Generate_EdgesConnectedToNodesOf(List_T *InitialList, List_T *NodeList,
21 List_T ** ExtendedList) ;
22 void Generate_Elements(List_T * InitialList,
23 int Type_SuppList, List_T * InitialSuppList,
24 int Type_SuppList2, List_T * InitialSuppList2,
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H A DGeoData.h14 List_T * Bricks;
22 List_T * Nodes, * Elements ;
30 List_T * GroupForPRE ;
39 List_T * PeriodicNodes;
42 int Geo_AddGeoData(List_T * GeoData_L,
99 void Geo_GenerateEdgesOfTree(List_T * InitialList, bool isInitialListEL,
102 int SuppListType2, List_T ** ExtendedList);
103 void Geo_GenerateFacetsOfTree(List_T * InitialList, List_T * InitialSuppList,
104 List_T * InitialSuppList2,
105 List_T ** ExtendedList) ;
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/dports/science/getdp/getdp-3.4.0-source/Interface/
H A DProData.h244 List_T *Couples;
330 List_T *Case;
479 List_T *Table;
1011 List_T *Save;
1036 List_T *Save;
1118 List_T *Time;
1166 List_T *Names;
1167 List_T *id;
1172 List_T *id;
1177 List_T *id;
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/dports/cad/gmsh/gmsh-4.9.2-source/Geo/
H A DGeo.h88 List_T *Control_Points;
107 List_T *Curves;
119 List_T *Generatrices;
121 List_T *TrsfPoints;
136 List_T *Surfaces;
147 List_T *TrsfPoints;
148 List_T *Surfaces;
150 List_T *SurfacesByTag;
157 List_T *Entities;
189 Curve *CreateCurve(int Num, int Typ, int Order, List_T *Liste, List_T *Knots,
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