/dports/science/getdp/getdp-3.4.0-source/Common/ |
H A D | ListUtils.h | 14 class List_T { 25 void List_Delete(List_T *liste); 26 void List_Realloc(List_T *liste,int n); 28 int List_Nbr(List_T *liste); 36 void List_Pop(List_T *liste); 55 void List_Invert(List_T *a, List_T *b); 56 void List_Reset(List_T *liste); 58 void List_Copy(List_T *a , List_T *b); 59 List_T *List_Copy(List_T *src); 60 void List_Merge(List_T *a , List_T *b); [all …]
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H A D | ListUtils.cpp | 53 List_T *liste; in List_Create() 60 liste = (List_T *) Malloc(sizeof(List_T)); in List_Create() 73 void List_Delete(List_T * liste) in List_Delete() 108 int List_Nbr(List_T * liste) in List_Nbr() 146 void List_Pop(List_T * liste) in List_Pop() 247 void List_Invert(List_T * a, List_T * b) in List_Invert() 256 void List_Reset(List_T * liste) in List_Reset() 271 void List_Copy(List_T * a, List_T * b) in List_Copy() 280 List_T *ListOfDouble2ListOfInt(List_T *dList) in ListOfDouble2ListOfInt() 383 List_T *List_Copy(List_T *src) in List_Copy() [all …]
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/dports/biology/gmap/gmap-2020-09-12/src/ |
H A D | pairpool.h | 24 extern List_T 27 extern List_T 29 extern List_T 32 extern List_T 35 extern List_T 37 extern List_T 39 extern List_T 40 Pairpool_transfer (List_T dest, List_T source); 41 extern List_T 42 Pairpool_transfer_n (List_T dest, List_T source, int n); [all …]
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H A D | hitlistpool.c | 37 List_T chunks; 42 List_T p; in Hitlistpool_free_memory() 100 List_T 103 List_T listcell; in Hitlist_push_actual() 104 List_T p; in Hitlist_push_actual() 127 List_T 130 List_T p; in Hitlist_push() 155 List_T p; in Hitlist_free_actual() 172 List_T 174 List_T head; in Hitlist_pop() [all …]
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H A D | stage3hr.h | 73 extern List_T 77 extern List_T 115 extern List_T 117 extern List_T 147 extern List_T 149 extern List_T 186 extern List_T 265 extern List_T 267 extern List_T 287 extern List_T [all …]
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H A D | listpool.c | 38 List_T chunks; 43 List_T p; in Listpool_free_memory() 69 static struct List_T * 73 chunk = (struct List_T *) MALLOC_KEEP(CHUNKSIZE*sizeof(struct List_T)); in add_new_chunk() 100 List_T 102 List_T listcell; in Listpool_push() 103 List_T p; in Listpool_push() 123 List_T 125 List_T head; in Listpool_pop() 137 List_T [all …]
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H A D | concordance.h | 21 extern List_T 23 List_T *distant_hitpairs, List_T hitpairs, 25 List_T hitlist5_gplus, List_T hitlist5_gminus, 26 List_T hitlist3_gplus, List_T hitlist3_gminus, 39 extern List_T 41 List_T *samechr, List_T *conc_transloc, List_T hitpairs, 43 List_T hitlist5_gplus, List_T hitlist5_gminus, 44 List_T hitlist3_gplus, List_T hitlist3_gminus,
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H A D | hitlistpool.h | 14 extern List_T 27 extern List_T 28 Hitlist_push (List_T list, T this, void *contents); 30 extern void Hitlist_free (List_T *old); 34 extern List_T 38 Hitlist_free (List_T *old) { in Hitlist_free() 39 *old = (List_T) NULL; in Hitlist_free() 54 extern List_T 55 Hitlist_pop (List_T list, void **contents); 56 extern List_T [all …]
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H A D | pair.h | 66 extern List_T 68 extern List_T 73 extern List_T 75 extern List_T 135 Pair_identical_p (List_T pairs1, List_T pairs2); 156 extern List_T 211 extern List_T 213 extern List_T 227 extern List_T 363 extern List_T [all …]
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H A D | transcript.h | 32 Transcript_gc (List_T *list); 35 extern List_T 36 Transcript_copy_list (List_T old); 38 Transcript_in_list_p (T x, List_T list); 40 Transcript_print_nums (List_T list); 42 Transcript_print_list (List_T list); 46 Transcript_intersect_p (int *min_insertlength, List_T transcripts5, List_T transcripts3); 50 Transcript_concordant_p (List_T transcripts5, List_T transcripts3); 53 Transcript_singleend_print (Filestring_T fp, List_T transcripts, Univ_IIT_T transcript_iit, 57 Transcript_concordance_print (Filestring_T fp, List_T transcripts5, List_T transcripts3,
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H A D | distant-rna.h | 17 List_T *sense_hits_plus, List_T *sense_hits_minus, 18 List_T *antisense_hits_plus, List_T *antisense_hits_minus, 20 List_T *startfrags_plus, List_T *endfrags_plus, 21 List_T *startfrags_minus, List_T *endfrags_minus, 23 List_T queryfwd_plus_set, List_T queryfwd_minus_set, 24 List_T queryrev_plus_set, List_T queryrev_minus_set,
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H A D | matchpool.c | 36 List_T matchchunks; 52 List_T p; in Matchpool_free_memory() 159 List_T 162 List_T listcell; in Matchpool_push() 164 List_T p; in Matchpool_push() 220 List_T 223 List_T p; in Matchpool_push_existing() 249 List_T 251 List_T head; in Matchpool_pop() 263 List_T [all …]
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H A D | diagpool.c | 41 List_T diagchunks; 46 List_T listcellchunks; 51 List_T p; in Diagpool_free_memory() 146 List_T 148 List_T listcell; in Diagpool_push() 150 List_T p; in Diagpool_push() 191 List_T 193 List_T head; in Diagpool_pop() 205 List_T 207 List_T listcell; in Diagpool_push_existing() [all …]
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H A D | pairpool.c | 179 List_T 261 List_T 304 List_T 374 List_T 455 List_T 503 List_T 526 List_T 554 List_T 605 List_T 644 List_T [all …]
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H A D | univdiagpool.c | 44 List_T univdiagchunks; 54 List_T p; in Univdiagpool_free_memory() 152 List_T p; in Univdiag_new() 178 List_T 180 List_T listcell; in Univdiagpool_push() 182 List_T p; in Univdiagpool_push() 222 List_T 224 List_T head; in Univdiagpool_pop() 236 List_T 238 List_T listcell; in Univdiagpool_push_existing() [all …]
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H A D | kmer-search.h | 22 extern List_T 30 List_T *sense_hits_gplus, List_T *sense_hits_gminus, 31 List_T *antisense_hits_gplus, List_T *antisense_hits_gminus, 44 List_T *sense_hits_gplus, List_T *sense_hits_gminus, 45 List_T *antisense_hits_gplus, List_T *antisense_hits_gminus, 54 List_T *sense_hits_gplus, List_T *sense_hits_gminus, 55 List_T *antisense_hits_gplus, List_T *antisense_hits_gminus,
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H A D | splicestringpool.c | 43 List_T objectchunks; 48 List_T listcellchunks; 53 List_T p; in Splicestringpool_free_memory() 112 static struct List_T * 114 struct List_T *chunk; in add_new_listcellchunk() 116 chunk = (struct List_T *) MALLOC_KEEP(CHUNKSIZE*sizeof(struct List_T)); in add_new_listcellchunk() 150 List_T 153 List_T listcell; in Splicestringpool_push() 155 List_T p; in Splicestringpool_push() 195 List_T [all …]
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H A D | cellpool.c | 43 List_T objectchunks; 48 List_T listcellchunks; 53 List_T p; in Cellpool_free_memory() 111 static struct List_T * 113 struct List_T *chunk; in add_new_listcellchunk() 115 chunk = (struct List_T *) MALLOC_KEEP(CHUNKSIZE*sizeof(struct List_T)); in add_new_listcellchunk() 149 List_T 152 List_T listcell; in Cellpool_push() 154 List_T p; in Cellpool_push() 198 List_T [all …]
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H A D | smooth.h | 8 Smooth_reset (List_T pairs); 9 extern List_T 10 Smooth_pairs_by_netgap (bool *deletep, List_T pairs, Pairpool_T pairpool); 11 extern List_T 12 Smooth_pairs_by_size (bool *shortp, bool *deletep, List_T pairs, Pairpool_T pairpool, int stage2_in… 13 extern List_T 14 Smooth_mark_short_exons (List_T pairs, Pairpool_T pairpool, int stage2_indexsize); 15 extern List_T 16 Smooth_pairs_by_intronprobs (bool *badp, List_T pairs, Pairpool_T pairpool);
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/dports/cad/gmsh/gmsh-4.9.2-source/Common/ |
H A D | ListUtils.h | 9 class List_T { 20 void List_Delete(List_T *liste); 23 void List_Add(List_T *liste, int data); 24 int List_Nbr(List_T *liste); 28 void List_Pop(List_T *liste); 43 void List_Invert(List_T *a, List_T *b); 44 void List_Reset(List_T *liste); 46 void List_Copy(List_T *a, List_T *b); 47 void List_Remove(List_T *a, int i); 48 void List_Insert_In_List(List_T *a, int i, List_T *b); [all …]
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H A D | ListUtils.cpp | 48 List_T *liste; in List_Create() 53 liste = (List_T *)Malloc(sizeof(List_T)); in List_Create() 66 void List_Delete(List_T *liste) in List_Delete() 106 int List_Nbr(List_T *liste) in List_Nbr() 146 void List_Pop(List_T *liste) in List_Pop() 259 void List_Invert(List_T *a, List_T *b) in List_Invert() 269 void List_Reset(List_T *liste) in List_Reset() 283 void List_Copy(List_T *a, List_T *b) in List_Copy() 293 void List_Remove(List_T *a, int i) in List_Remove() 302 void List_Insert_In_List(List_T *a, int i, List_T *b) in List_Insert_In_List() [all …]
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/dports/science/getdp/getdp-3.4.0-source/Kernel/ |
H A D | ExtendedGroup.h | 14 void Generate_ElementaryEntities(List_T * InitialList, List_T ** ExtendedList, 16 void Generate_GroupsOfNodes(List_T * InitialList, List_T ** ExtendedList) ; 17 void Generate_GroupsOfEdges(List_T * InitialList, int Type_SuppList, 18 List_T * InitialSuppList, List_T ** ExtendedList) ; 19 void Generate_GroupsOfFacets(List_T * InitialList, List_T ** ExtendedList) ; 20 void Generate_EdgesConnectedToNodesOf(List_T *InitialList, List_T *NodeList, 21 List_T ** ExtendedList) ; 22 void Generate_Elements(List_T * InitialList, 23 int Type_SuppList, List_T * InitialSuppList, 24 int Type_SuppList2, List_T * InitialSuppList2, [all …]
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H A D | GeoData.h | 14 List_T * Bricks; 22 List_T * Nodes, * Elements ; 30 List_T * GroupForPRE ; 39 List_T * PeriodicNodes; 42 int Geo_AddGeoData(List_T * GeoData_L, 99 void Geo_GenerateEdgesOfTree(List_T * InitialList, bool isInitialListEL, 102 int SuppListType2, List_T ** ExtendedList); 103 void Geo_GenerateFacetsOfTree(List_T * InitialList, List_T * InitialSuppList, 104 List_T * InitialSuppList2, 105 List_T ** ExtendedList) ; [all …]
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/dports/science/getdp/getdp-3.4.0-source/Interface/ |
H A D | ProData.h | 244 List_T *Couples; 330 List_T *Case; 479 List_T *Table; 1011 List_T *Save; 1036 List_T *Save; 1118 List_T *Time; 1166 List_T *Names; 1167 List_T *id; 1172 List_T *id; 1177 List_T *id; [all …]
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/dports/cad/gmsh/gmsh-4.9.2-source/Geo/ |
H A D | Geo.h | 88 List_T *Control_Points; 107 List_T *Curves; 119 List_T *Generatrices; 121 List_T *TrsfPoints; 136 List_T *Surfaces; 147 List_T *TrsfPoints; 148 List_T *Surfaces; 150 List_T *SurfacesByTag; 157 List_T *Entities; 189 Curve *CreateCurve(int Num, int Typ, int Order, List_T *Liste, List_T *Knots, [all …]
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