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Searched refs:LnProbGamma (Results 1 – 5 of 5) sorted by relevance

/dports/biology/mrbayes/MrBayes-3.2.7/src/
H A Dproposal.c1944 (*lnPriorRatio) -= LnProbGamma(a->length/igrvar, a->length/igrvar, igrRate[a->index]); in Move_ExtFossilSPRClock()
1945 (*lnPriorRatio) -= LnProbGamma(u->length/igrvar, u->length/igrvar, igrRate[u->index]); in Move_ExtFossilSPRClock()
2176 (*lnPriorRatio) += LnProbGamma (a->length/igrvar, a->length/igrvar, igrRate[a->index]); in Move_ExtFossilSPRClock()
3380 (*lnPriorRatio) -= LnProbGamma(a->length/igrvar, a->length/igrvar, igrRate[a->index]); in Move_ExtSPRClock()
3381 (*lnPriorRatio) -= LnProbGamma(u->length/igrvar, u->length/igrvar, igrRate[u->index]); in Move_ExtSPRClock()
5268 (*lnPriorRatio) = LnProbGamma (p->length/igrvar, p->length/igrvar, newRate) in Move_IgrBranchRate()
5269 - LnProbGamma (p->length/igrvar, p->length/igrvar, oldRate); in Move_IgrBranchRate()
5344 (*lnPriorRatio) = LnProbGamma (p->length/igrvar, p->length/igrvar, newRate) in Move_IgrBranchRate2()
5345 - LnProbGamma (p->length/igrvar, p->length/igrvar, oldRate); in Move_IgrBranchRate2()
5532 (*lnPriorRatio) -= LnProbGamma (p->length/mxvar, p->length/mxvar, oldRate); in Move_MixedBranchRate()
[all …]
H A Dbest.c1638 …(*lnPriorRatio) -= LnProbGamma (oldLeftLength/igrvar, oldLeftLength/igrvar, igrRate[p->left->index… in Move_NodeSliderGeneTree()
1639 …(*lnPriorRatio) -= LnProbGamma (oldRightLength/igrvar, oldRightLength/igrvar, igrRate[p->right->in… in Move_NodeSliderGeneTree()
1640 …(*lnPriorRatio) += LnProbGamma (p->left->length/igrvar, p->left->length/igrvar, igrRate[p->left->i… in Move_NodeSliderGeneTree()
1641 …(*lnPriorRatio) += LnProbGamma (p->right->length/igrvar, p->right->length/igrvar, igrRate[p->right… in Move_NodeSliderGeneTree()
1645 … (*lnPriorRatio) -= LnProbGamma (oldPLength/igrvar, oldPLength/igrvar, igrRate[p->index]); in Move_NodeSliderGeneTree()
1646 … (*lnPriorRatio) += LnProbGamma (p->length /igrvar, p->length /igrvar, igrRate[p->index]); in Move_NodeSliderGeneTree()
H A Dutils.h265 MrBFlt LnProbGamma (MrBFlt alpha, MrBFlt beta, MrBFlt x);
H A Dutils.c13024 MrBFlt LnProbGamma (MrBFlt alpha, MrBFlt beta, MrBFlt x) in LnProbGamma() function
H A Dmcmc.c8289 … lnPrior += LnProbGamma (branch->length/igrvar, branch->length/igrvar, st[branch->index]); in LogPrior()