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/dports/biology/py-macs2/MACS-2.2.7.1/
H A DINSTALL.md1 # INSTALL Guide For MACS
8 MACS v2.2.x requires Python3. We have tested MACS in Python3.6, 3.7
11 MACS also requires [Numpy](http://www.scipy.org/Download) (>=1.17).
13 GCC is required to compile `.c` codes in MACS v2 package, and python
19 [Cython](http://cython.org/) is **NOT** required although most of MACS
26 I strongly recommend installing your MACS program in a virtual
41 The easiest way to install MACS is through PyPI system. Get `pip` if
60 MACS is included in Debian Stretch/Buster/Unstable blessed by some
69 unpacked MACS, and simply run the install script:
92 order to install MACS. When Cython is available, this setup script
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H A DChangeLog2 MACS version 2.2.7.1
10 MACS version 2.2.7
48 MACS version 2.2.6
83 MACS version 2.2.5 (Py3 speed up)
116 MACS version 2.2.4 (Python3)
135 MACS version 2.1.4
156 MACS version 2.1.3.3
193 MACS version 2.1.2
230 MACS version 2.1.1 20160309
999 to let MACS keep all reads.
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H A DREADME.md1 # MACS: Model-based Analysis for ChIP-Seq
3 …MACS)](https://github.com/taoliu/MACS/blob/master/LICENSE) ![Programming languages](https://img.sh…
8 …b Release](https://img.shields.io/github/v/release/taoliu/MACS)](https://github.com/taoliu/MACS/re…
19 the **M**odel-based **A**nalysis of **C**hIP-**S**eq (MACS), for
20 identifying transcript factor binding sites. MACS captures the
22 enriched ChIP regions and MACS improves the spatial resolution of
24 position and orientation. MACS can be easily used for ChIP-Seq data
26 specificity. Moreover, as a general peak-caller, MACS can also be
31 ## Recent Changes for MACS (2.2.7.1)
268 compared with the *local biases* modeled by MACS.
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/dports/biology/py-macs2/MACS-2.2.7.1/DOCKER/
H A DDockerfile5 RUN git clone https://github.com/taoliu/MACS.git /MACS
6 …pi.python.org --upgrade pip && pip install --trusted-host pypi.python.org -r /MACS/requirements.txt
7 RUN cd /MACS && python setup.py install
H A DDockerfile-slim5 RUN git clone https://github.com/taoliu/MACS.git /MACS
6 …pi.python.org --upgrade pip && pip install --trusted-host pypi.python.org -r /MACS/requirements.txt
7 RUN cd /MACS && python setup.py install
/dports/devel/dasm/dasm-2.20.14.1/
H A DMakefile73 MACS=machines/atari2600/* machines/channel-f/* macro
83 CONTENTS=$(DOCS) $(MACS) $(SRCS) $(TSTS) $(OTHS)
88 CONTENTS=$(BINS) $(DOCS) $(MACS) $(SRCS) $(TSTS) $(OTHS)
110 -tar zcvf dasm-beta-`date +%F`.tar.gz README.BETA $(MACS) $(OTHS) $(SRCS) $(TSTS)
/dports/net-mgmt/ettercap/ettercap-0.8.3.1/plug-ins/rand_flood/
H A Drand_flood.c139 u_char MACS[ETH_ADDR_LEN], MACD[ETH_ADDR_LEN]; in EC_THREAD_FUNC() local
168 memcpy(MACS, &rnd, 4); in EC_THREAD_FUNC()
170 memcpy(MACS + 4, &rnd, 2); in EC_THREAD_FUNC()
181 memcpy(heth->sha, MACS, ETH_ADDR_LEN); in EC_THREAD_FUNC()
/dports/textproc/heirloom-doctools/heirloom-doctools-160308/troff/troff.d/tmac.d/
H A DMakefile.mk1 MACS = acm.me bib chars.me deltext.me e eqn.me \
13 all: $(MACS)
17 for i in $(MACS); \
/dports/devel/mspdebug/mspdebug-493f38b/simio/
H A Dsimio_hwmult.c31 #define MACS 0x0136 /* Multiply Signed and Accumulate/Operand 1 */ macro
120 case MACS: in hwmult_write()
137 case MACS: in hwmult_read()
/dports/devel/upp/upp/bazaar/ProtectServer/
H A DProtectDB.cpp237 SQL * Select(SqlAll()).From(MACS).Where(MAC == mac); in GetMACEMails()
287 SQL * Select(SqlAll()).From(MACS).Where(MAC == mac); in UpdateMac()
304 SQL * Update(MACS) in UpdateMac() local
310 SQL * Insert(MACS) in UpdateMac() local
/dports/security/libssh/libssh-0.9.6/tests/unittests/
H A Dtorture_bind_config.c226 "MACs "MACS"\n"); in setup_config_files()
230 "MACs "MACS"\n" in setup_config_files()
233 "MACs "MACS"\n" in setup_config_files()
253 "MACs "MACS"\n" in setup_config_files()
686 assert_string_equal(bind->wanted_methods[SSH_MAC_S_C], MACS); in torture_bind_config_macs()
689 assert_string_equal(bind->wanted_methods[SSH_MAC_C_S], MACS); in torture_bind_config_macs()
696 assert_string_equal(bind->wanted_methods[SSH_MAC_S_C], MACS); in torture_bind_config_macs()
699 assert_string_equal(bind->wanted_methods[SSH_MAC_C_S], MACS); in torture_bind_config_macs()
706 assert_string_equal(bind->wanted_methods[SSH_MAC_S_C], MACS); in torture_bind_config_macs()
709 assert_string_equal(bind->wanted_methods[SSH_MAC_C_S], MACS); in torture_bind_config_macs()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/unit_test/bedreader_test_cases/
H A Dgood4.asn3 name "MACS peaks for Mouse_h3k27ac_FL1_p00001",
9 data str "MACS peaks for Mouse_h3k27ac_FL1_p00001"
H A Dgood4.bed1 track name="MACS peaks for Mouse_h3k27ac_FL1_p00001"
/dports/sysutils/munin-contrib/contrib-c31cb28/plugins/network/
H A Dbrc_rssi58 0) MACS="$(echo "$AL" | cut -d' ' -f2)";;
63 for M in $MACS; do
/dports/net-mgmt/netdot/Netdot-netdot-1.0.7/bin/
H A Dprune_db.pl50 "M|macs" => \$self{MACS},
72 unless ( $self{FWT} || $self{ARP} || $self{MACS} ||
99 if ( $self{MACS} ){
/dports/biology/ugene/ugene-40.1/data/workflow_samples/NGS/cistrome/
H A Dchip_seq.uwl2 #ChIP-seq analysis is started from MACS tool. CEAS then takes peak regions and signal wiggle file t…
10 name:"Find Peaks with MACS";
84 …ctx.warning("MACS tool supports the following formats: ELAND, BED, ELANDMULTI, ELANDEXPORT, ELANDM…
259 title:"MACS input";
270 title:MACS;
421 title:"MACS output";
H A Dchip_seq_with_control.uwl2 #ChIP-seq analysis is started from MACS tool. CEAS then takes peak regions and signal wiggle file t…
10 name:"Find Peaks with MACS";
88 …ctx.warning("MACS tool supports the following formats: ELAND, BED, ELANDMULTI, ELANDEXPORT, ELANDM…
132 …ctx.warning("MACS tool supports the following formats: ELAND, BED, ELANDMULTI, ELANDEXPORT, ELANDM…
335 title:MACS;
486 title:"MACS output";
/dports/multimedia/handbrake/ffmpeg-4.4/libavcodec/
H A Dmpegaudiodsp_template.c43 #define MACS(rt, ra, rb) rt+=(ra)*(rb) macro
66 # define MACS(rt, ra, rb) MAC64(rt, ra, rb) macro
146 SUM8(MACS, sum, w, p); in RENAME()
158 SUM8P2(sum, MACS, sum2, MLSS, w, w2, p); in RENAME()
/dports/multimedia/ffmpeg/ffmpeg-4.4.1/libavcodec/
H A Dmpegaudiodsp_template.c43 #define MACS(rt, ra, rb) rt+=(ra)*(rb) macro
66 # define MACS(rt, ra, rb) MAC64(rt, ra, rb) macro
146 SUM8(MACS, sum, w, p); in RENAME()
158 SUM8P2(sum, MACS, sum2, MLSS, w, w2, p); in RENAME()
/dports/www/firefox/firefox-99.0/media/ffvpx/libavcodec/
H A Dmpegaudiodsp_template.c43 #define MACS(rt, ra, rb) rt+=(ra)*(rb) macro
66 # define MACS(rt, ra, rb) MAC64(rt, ra, rb) macro
146 SUM8(MACS, sum, w, p); in RENAME()
158 SUM8P2(sum, MACS, sum2, MLSS, w, w2, p); in RENAME()
/dports/emulators/vice/vice-3.5/src/lib/libffmpeg/libavcodec/
H A Dmpegaudiodsp_template.c40 #define MACS(rt, ra, rb) rt+=(ra)*(rb) macro
63 # define MACS(rt, ra, rb) MAC64(rt, ra, rb) macro
143 SUM8(MACS, sum, w, p); in RENAME()
155 SUM8P2(sum, MACS, sum2, MLSS, w, w2, p); in RENAME()
/dports/www/firefox-esr/firefox-91.8.0/media/ffvpx/libavcodec/
H A Dmpegaudiodsp_template.c40 #define MACS(rt, ra, rb) rt+=(ra)*(rb) macro
63 # define MACS(rt, ra, rb) MAC64(rt, ra, rb) macro
143 SUM8(MACS, sum, w, p); in RENAME()
155 SUM8P2(sum, MACS, sum2, MLSS, w, w2, p); in RENAME()
/dports/multimedia/gstreamer1-libav/gst-libav-1.16.2/gst-libs/ext/libav/libavcodec/
H A Dmpegaudiodsp_template.c40 #define MACS(rt, ra, rb) rt+=(ra)*(rb) macro
63 # define MACS(rt, ra, rb) MAC64(rt, ra, rb) macro
143 SUM8(MACS, sum, w, p); in RENAME()
155 SUM8P2(sum, MACS, sum2, MLSS, w, w2, p); in RENAME()
/dports/www/qt5-webengine/qtwebengine-everywhere-src-5.15.2/src/3rdparty/chromium/third_party/ffmpeg/libavcodec/
H A Dmpegaudiodsp_template.c40 #define MACS(rt, ra, rb) rt+=(ra)*(rb) macro
63 # define MACS(rt, ra, rb) MAC64(rt, ra, rb) macro
143 SUM8(MACS, sum, w, p); in RENAME()
155 SUM8P2(sum, MACS, sum2, MLSS, w, w2, p); in RENAME()
/dports/emulators/libretro-vice/vice-libretro-5725415/vice/src/lib/libffmpeg/libavcodec/
H A Dmpegaudiodsp_template.c40 #define MACS(rt, ra, rb) rt+=(ra)*(rb) macro
63 # define MACS(rt, ra, rb) MAC64(rt, ra, rb) macro
143 SUM8(MACS, sum, w, p); in RENAME()
155 SUM8P2(sum, MACS, sum2, MLSS, w, w2, p); in RENAME()

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