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Searched refs:MASK_SOFT (Results 1 – 10 of 10) sorted by relevance

/dports/biology/vsearch/vsearch-2.17.1/src/
H A Dmask.h64 #define MASK_SOFT 2 macro
H A Dmask.cc268 } else if ((opt_qmask == MASK_SOFT) && (opt_hardmask)) { in maskfasta()
322 } else if ((opt_qmask == MASK_SOFT) && (opt_hardmask)) { in fastx_mask()
H A Dsearch.cc293 else if ((opt_qmask == MASK_SOFT) && (opt_hardmask)) in search_query()
645 } else if ((opt_dbmask == MASK_SOFT) && (opt_hardmask)) { in search_prep()
H A Dsearchexact.cc367 else if ((opt_qmask == MASK_SOFT) && (opt_hardmask)) in search_exact_query()
694 } else if ((opt_dbmask == MASK_SOFT) && (opt_hardmask)) { in search_exact_prep()
H A Dorient.cc171 } else if ((opt_dbmask == MASK_SOFT) && (opt_hardmask)) { in orient()
H A Dallpairs.cc669 } else if ((opt_qmask == MASK_SOFT) && (opt_hardmask)) { in allpairs_global()
H A Dchimera.cc1730 } else if ((opt_dbmask == MASK_SOFT) && (opt_hardmask)) { in chimera()
1756 } else if ((opt_qmask == MASK_SOFT) && (opt_hardmask)) { in chimera()
H A Dudb.cc849 } else if ((opt_dbmask == MASK_SOFT) && (opt_hardmask)) { in udb_make()
H A Dcluster.cc1221 } else if ((opt_qmask == MASK_SOFT) && (opt_hardmask)) { in cluster()
H A Dvsearch.cc1757 opt_qmask = MASK_SOFT; in args_init()
1770 opt_dbmask = MASK_SOFT; in args_init()