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Searched refs:MAX_GENOME_LENGTH (Results 1 – 11 of 11) sorted by relevance

/dports/biology/avida/avida-2.12.4-src/avida-core/include/public/avida/core/
H A DDefinitions.h29 const int MAX_GENOME_LENGTH = 2048; variable
/dports/biology/bbmap/bbmap/current/icecream/
H A DIceCreamMaker.java476 assert(genomeSize<=MAX_GENOME_LENGTH) : genomeSize; in genSynthGenome()
522 if(bb.length()+bases.length<=MAX_GENOME_LENGTH){ in loadData()
529 if(bb.length>=MAX_GENOME_LENGTH){ in loadData()
986 private static final long MAX_GENOME_LENGTH=2000000000;
/dports/biology/avida/avida-2.12.4-src/avida-core/source/cpu/
H A DcHardwareBase.cc155 const int max_size = Min(MAX_GENOME_LENGTH, static_cast<int>(genome_size * size_range)); in Divide_CheckViable()
283 if (!max_genome_size || max_genome_size > MAX_GENOME_LENGTH) max_genome_size = MAX_GENOME_LENGTH; in Divide_DoMutations()
583 … if (!max_genome_size || max_genome_size > MAX_GENOME_LENGTH) max_genome_size = MAX_GENOME_LENGTH; in doUniformMutation()
H A DcHardwareSMT.cc994 if( num_mut + injected_code.GetSize() > MAX_GENOME_LENGTH ){ in Inject_DoMutations()
995 num_mut = MAX_GENOME_LENGTH - injected_code.GetSize(); in Inject_DoMutations()
H A DcHardwareTransSMT.cc1064 if( num_mut + injected_code.GetSize() > MAX_GENOME_LENGTH ) in Inject_DoMutations()
1065 num_mut = MAX_GENOME_LENGTH - injected_code.GetSize(); in Inject_DoMutations()
H A DcHardwareGX.cc1059 if (new_size > MAX_GENOME_LENGTH || new_size < MIN_GENOME_LENGTH) { in Allocate_Main()
1924 MAX_GENOME_LENGTH - cur_size); in Inst_MaxAlloc()
3540 …_size = Min((int) (m_world->GetConfig().OFFSPRING_SIZE_RANGE.Get() * cur_size), MAX_GENOME_LENGTH); in Inst_ProgramidImplicitAllocate()
H A DcHardwareCPU.cc1674 if (new_size > MAX_GENOME_LENGTH || new_size < MIN_GENOME_LENGTH) { in Allocate_Main()
3218 MAX_GENOME_LENGTH - cur_size); in Inst_MaxAlloc()
3231 MAX_GENOME_LENGTH - cur_size); in Inst_MaxAllocMoveWriteHead()
H A DcHardwareExperimental.cc1456 if (new_size > MAX_GENOME_LENGTH || new_size < MIN_GENOME_LENGTH) { in Allocate_Main()
1990 MAX_GENOME_LENGTH - cur_size); in Inst_HeadAlloc()
/dports/biology/avida/avida-2.12.4-src/avida-core/source/main/
H A DcBirthChamber.cc196 if (new_size0 < MIN_GENOME_LENGTH || new_size0 > MAX_GENOME_LENGTH || in RegionSwap()
197 new_size1 < MIN_GENOME_LENGTH || new_size1 > MAX_GENOME_LENGTH) { in RegionSwap()
/dports/biology/avida/avida-2.12.4-src/avida-core/source/analyze/
H A DcAnalyze.cc3969 if (new_size0 < MIN_GENOME_LENGTH || new_size0 > MAX_GENOME_LENGTH || in AnalyzeMateSelection()
3970 new_size1 < MIN_GENOME_LENGTH || new_size1 > MAX_GENOME_LENGTH) { in AnalyzeMateSelection()
5882 if (new_size0 < MIN_GENOME_LENGTH || new_size0 > MAX_GENOME_LENGTH || in CommandSpecies()
5883 new_size1 < MIN_GENOME_LENGTH || new_size1 > MAX_GENOME_LENGTH) { in CommandSpecies()
5988 if (new_size0 < MIN_GENOME_LENGTH || new_size0 > MAX_GENOME_LENGTH || in CommandRecombine()
5989 new_size1 < MIN_GENOME_LENGTH || new_size1 > MAX_GENOME_LENGTH) { in CommandRecombine()
6088 if (new_size0 < MIN_GENOME_LENGTH || new_size0 > MAX_GENOME_LENGTH || in CommandRecombineSample()
6089 new_size1 < MIN_GENOME_LENGTH || new_size1 > MAX_GENOME_LENGTH) { in CommandRecombineSample()
6339 fp << MAX_GENOME_LENGTH << " "; in WriteClone()
6340 for (int i = 0; i < MAX_GENOME_LENGTH; i++) { in WriteClone()
/dports/biology/avida/avida-2.12.4-src/avida-core/source/actions/
H A DPrintActions.cc2873 tArray<cHistogram> inst_hist(MAX_GENOME_LENGTH); in Process()
2874 for (int i = 0; i < MAX_GENOME_LENGTH; i++) inst_hist[i].Resize(num_inst,-1); in Process()
2893 for (int j = length; j < MAX_GENOME_LENGTH; j++) { in Process()
2906 for (con_length = 0; con_length < MAX_GENOME_LENGTH; con_length++) { in Process()
2914 for (int i = 0; i < MAX_GENOME_LENGTH; i++) { in Process()