Searched refs:MIN_CALLED_QUALITY (Results 1 – 3 of 3) sorted by relevance
| /dports/biology/bbmap/bbmap/current/stream/ |
| H A D | Read.java | 139 …) : (char)bases[i]+", "+quality[i]+", "+i+", "+CHANGE_QUALITY+", "+MIN_CALLED_QUALITY+"\n"+toFastq… in checkQuality()
4036 private static byte MIN_CALLED_QUALITY=2; field in Read
4043 public static byte[] qMap=makeQmap(MIN_CALLED_QUALITY, MAX_CALLED_QUALITY);
4045 public static byte MIN_CALLED_QUALITY(){return MIN_CALLED_QUALITY;} in MIN_CALLED_QUALITY() method in Read
4052 qMap=makeQmap(MIN_CALLED_QUALITY, MAX_CALLED_QUALITY); in setMaxCalledQuality()
4058 if(x!=MIN_CALLED_QUALITY){ in setMinCalledQuality()
4059 MIN_CALLED_QUALITY=(byte)x; in setMinCalledQuality()
4060 qMap=makeQmap(MIN_CALLED_QUALITY, MAX_CALLED_QUALITY); in setMinCalledQuality()
4065 return (byte)Tools.mid(MIN_CALLED_QUALITY, q, MAX_CALLED_QUALITY); in capQuality()
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| /dports/biology/bbmap/bbmap/current/shared/ |
| H A D | ReadStats.java | 1075 final int qMin=Read.MIN_CALLED_QUALITY(), qMax=Read.MAX_CALLED_QUALITY(); in writeQualityAccuracyToFile()
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| H A D | Parser.java | 1149 Read.setMinCalledQuality(Tools.min(x, Read.MIN_CALLED_QUALITY())); in parseQualityAdjust()
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