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Searched refs:MM_F_OUT_CS (Results 1 – 5 of 5) sorted by relevance

/dports/biology/minimap2/minimap2-2.24/
H A Dmain.c247 opt.flag |= MM_F_OUT_CS | MM_F_CIGAR; in main()
253 opt.flag &= ~MM_F_OUT_CS; in main()
266 opt.flag |= MM_F_OUT_CS | MM_F_CIGAR | MM_F_OUT_CS_LONG; in main()
H A Dminimap.h14 #define MM_F_OUT_CS 0x040 macro
H A Doptions.c176 if (mo->split_prefix && (mo->flag & (MM_F_OUT_CS|MM_F_OUT_MD))) { in mm_check_opt()
H A Dformat.c328 if (r->p && (opt_flag & (MM_F_OUT_CS|MM_F_OUT_MD))) in mm_write_paf3()
535 if (r->p && (opt_flag & (MM_F_OUT_CS|MM_F_OUT_MD))) in mm_write_sam3()
H A Dmap.c569 if ((p->opt->flag & MM_F_OUT_CS) && !(mm_dbg_flag & MM_DBG_NO_KALLOC)) km = km_init(); in worker_pipeline()