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Searched refs:MYREAL (Results 1 – 25 of 70) sorted by relevance

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/dports/biology/migrate/migrate-3.6.11/src/
H A Dmigration.h94 MYREAL date;
106 MYREAL ess;
107 MYREAL accept;
392 MYREAL min;
393 MYREAL mean;
394 MYREAL std;
395 MYREAL max;
599 MYREAL *mg;
691 MYREAL v;
1225 MYREAL *bf;
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H A Dcombroyden.h49 extern MYREAL calc_loci_like (helper_fmt * helper, MYREAL *param,
52 extern void calc_apgg (MYREAL thetax, MYREAL **apgg, nr_fmt * nr,
54 extern void set_gamma_param (MYREAL *paramn, MYREAL *paramo, MYREAL *lparamn,
57 MYREAL thetax, MYREAL theta1);
60 MYREAL *dv, MYREAL lamda, long nnn);
80 extern void set_logparam (MYREAL *loga, MYREAL *a, long size);
81 extern void set_expparam (MYREAL *expa, MYREAL *a, long size);
87 extern void replace_with (int mode, MYREAL *a, MYREAL *b, MYREAL *c, MYREAL m,
88 MYREAL *la, MYREAL *lb, MYREAL *lc, MYREAL ll);
89 MYREAL quadratic_lamda (MYREAL lamda, MYREAL a, MYREAL b, MYREAL c, MYREAL la,
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H A Dlaguerre.c69 MYREAL
109 MYREAL hermite (long n, MYREAL x);
111 MYREAL halfroot (MYREAL (*func) (long m, MYREAL x),
117 MYREAL glaguerre (long m, MYREAL b, MYREAL x);
135 MYREAL
136 glaguerre (long m, MYREAL b, MYREAL x) in glaguerre()
166 MYREAL
214 MYREAL
215 halfroot (MYREAL (*func) (long m, MYREAL x), in halfroot()
397 MYREAL *rate, MYREAL *probcat) in initgammacat()
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H A Dpriors.c51 MYREAL normal_rand(MYREAL mean, MYREAL std) in normal_rand()
72 MYREAL __gamma_rand(MYREAL alpha) in __gamma_rand()
97 MYREAL gamma_rand(MYREAL alpha, MYREAL beta) in gamma_rand()
112 MYREAL trunc_gamma_rand(MYREAL alpha, MYREAL beta, MYREAL lower, MYREAL upper) in trunc_gamma_rand()
126 MYREAL logpdf_gamma(MYREAL a, MYREAL b, MYREAL x) in logpdf_gamma()
134 MYREAL cdf_gamma(MYREAL a, MYREAL b, MYREAL x) in cdf_gamma()
140 MYREAL logpdf_truncgamma(MYREAL a, MYREAL b, MYREAL xmin, MYREAL xmax, MYREAL x) in logpdf_truncgamma()
149 MYREAL mean_truncgamma(MYREAL alpha, MYREAL beta, MYREAL lower, MYREAL upper) in mean_truncgamma()
166 MYREAL find_beta_truncgamma(MYREAL mean, MYREAL alpha, MYREAL lower, MYREAL upper) in find_beta_truncgamma()
215 MYREAL
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H A Dbroyden.h45 extern MYREAL absmaxvec (MYREAL *v, long n);
53 extern MYREAL calc_locus_like (nr_fmt * nr, MYREAL *param, MYREAL *lparam,
55 extern void calc_param (nr_fmt * nr, MYREAL *param, MYREAL lamda);
65 extern MYREAL probG (MYREAL *param, MYREAL *lparam, tarchive_fmt * tl,
68 extern void calc_cov (MYREAL **dd, MYREAL *d, MYREAL *param, long n);
70 extern void calc_dv (MYREAL *dv, MYREAL **hess, MYREAL *gxv, long n);
71 extern MYREAL calc_line (helper_fmt * helper, MYREAL a, MYREAL b, MYREAL c,
72 MYREAL (*psi) (MYREAL, helper_fmt *));
73 extern void calc_hessian (MYREAL **hess, long n, MYREAL *delta, MYREAL *gama);
74 extern MYREAL psi (MYREAL lamda, helper_fmt * helper, MYREAL *param,
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H A Dspline.c71 MYREAL *a, MYREAL *b, MYREAL *c, MYREAL *d, MYREAL *p1, MYREAL *p2);
73 dtst_ (MYREAL *a, MYREAL *b, MYREAL *c, MYREAL *d, MYREAL *eps);
93 MYREAL *a, MYREAL *b, MYREAL *c, MYREAL *d,
115 MYREAL *x, MYREAL *y, MYREAL *d, MYREAL *d2,
166 MYREAL *a1, MYREAL *a2, MYREAL *h, MYREAL *d2,
177 …MYREAL *tb, MYREAL *l, MYREAL *laux0, MYREAL *laux1,MYREAL *laux2,MYREAL *y0tab,MYREAL *y1tab,MYRE…
191 …MYREAL *d, MYREAL *d2, MYREAL *tb, MYREAL *l, MYREAL *laux0, MYREAL *laux1, MYREAL *laux2, MYREAL …
202 MYREAL *a, MYREAL *b, MYREAL *c, MYREAL *d,
500 …MYREAL (*beta) (MYREAL *), MYREAL (*betai) (MYREAL *), MYREAL (*rho) (MYREAL *), MYREAL (*rhoi) (M… in dbvc_()
1833 …MYREAL *d, MYREAL *d2, MYREAL *tb, MYREAL *l, MYREAL *laux0, MYREAL *laux1, MYREAL *laux2, MYREAL … in dbntab_()
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H A Dspline.h42 extern int dbvssc_ (MYREAL *x, MYREAL *y, long *np, long *n, long *k,
43 long *opt, MYREAL *d0, MYREAL *dnp, MYREAL *d20,
44 MYREAL *d2np, long *constr, MYREAL *eps,
45 … MYREAL (*beta) (MYREAL *), MYREAL (*betai) (MYREAL *), MYREAL (*rho) (MYREAL *),
46 MYREAL (*rhoi) (MYREAL *), long *kmax, long *maxstp, long *errc,
47 MYREAL *d, MYREAL *d2, long *diagn, MYREAL *work,
50 extern int dbvsse_ (MYREAL *x, MYREAL *y, long *np, long *n, long *k,
51 MYREAL *xtab, long *ntab, long *sbopt, long *y0opt,
52 long *y1opt, long *y2opt, long *errc, MYREAL *d,
53 MYREAL *d2, MYREAL *y0tab, MYREAL *y1tab, MYREAL *y2tab,
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H A Dcombroyden2.c66 MYREAL (*calc_like) (helper_fmt *, MYREAL *, MYREAL *);
112 MYREAL psilo (MYREAL lamda, helper_fmt * helper, MYREAL *param,
125 MYREAL line_search (MYREAL *dv, MYREAL *gxv,
131 void replace_with (int mode, MYREAL *a, MYREAL *b, MYREAL *c, MYREAL m,
132 MYREAL *la, MYREAL *lb, MYREAL *lc, MYREAL ll);
133 MYREAL psil (MYREAL (*fpsi) (MYREAL lamda, helper_fmt * helper), MYREAL a,
135 MYREAL oldL, MYREAL *val1, MYREAL *val2);
136 MYREAL quadratic_lamda (MYREAL lamda, MYREAL a, MYREAL b, MYREAL c, MYREAL la,
846 replace_with (int mode, MYREAL *a, MYREAL *b, MYREAL *c, MYREAL m, MYREAL *la, in replace_with()
847 MYREAL *lb, MYREAL *lc, MYREAL ll) in replace_with()
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H A Dtools.h56 extern MYREAL incompletegamma (MYREAL tx, MYREAL talpha);
57 extern MYREAL polygamma (long n, MYREAL z);
59 extern boolean nrcheck (MYREAL **m, MYREAL **tm, MYREAL *v, long nrows,
61 extern MYREAL rannor (MYREAL mean, MYREAL sd);
62 extern MYREAL find_chi (long df, MYREAL prob);
65 extern MYREAL probchi (long df, MYREAL chi);
66 extern MYREAL chisquare (long df, MYREAL alpha);
70 extern MYREAL mylgamma (MYREAL z);
72 extern MYREAL calc_sum (MYREAL *vector, long n);
76 extern void onepass_mean_std_calc(MYREAL *mean, MYREAL *std, long *n, MYREAL x);
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H A Dpriors.h40 extern MYREAL find_beta_truncgamma(MYREAL mean, MYREAL alpha, MYREAL lower, MYREAL upper);
41 extern MYREAL propose_gamma_newparam (MYREAL param, long which, bayes_fmt * bayes, MYREAL *r);
42 extern MYREAL hastings_ratio_gamma(MYREAL newparam, MYREAL oldparam, MYREAL delta, MYREAL r, bayes_…
43 extern MYREAL log_prior_ratio_gamma(MYREAL newparam, MYREAL oldparam, bayes_fmt * bayes, long whi…
44 extern MYREAL log_prior_gamma(world_fmt *world, long numparam);
45 extern MYREAL log_prior_gamma1(world_fmt *world, long numparam, MYREAL val);
46 extern MYREAL hastings_ratio_gamma(MYREAL newparam, MYREAL oldparam, MYREAL delta, MYREAL r, bayes_…
H A Dbayes.c99 MYREAL (*hastings_ratiotheta) (MYREAL , MYREAL, MYREAL, MYREAL, bayes_fmt *, long );
100 MYREAL (*hastings_ratiomig) (MYREAL , MYREAL, MYREAL, MYREAL, bayes_fmt *, long );
101 MYREAL (*hastings_ratiorate) (MYREAL , MYREAL, MYREAL, MYREAL, bayes_fmt *, long );
189 …hastings_ratiotheta = (MYREAL (*) (MYREAL, MYREAL, MYREAL, MYREAL, bayes_fmt *, long)) hastings_ra… in which_theta_prior()
196 …hastings_ratiotheta = (MYREAL (*) (MYREAL, MYREAL, MYREAL, MYREAL, bayes_fmt *, long )) hastings_r… in which_theta_prior()
203 …hastings_ratiotheta = (MYREAL (*) (MYREAL, MYREAL, MYREAL, MYREAL, bayes_fmt *, long)) hastings_ra… in which_theta_prior()
239 …hastings_ratiomig = (MYREAL (*) (MYREAL, MYREAL, MYREAL, MYREAL, bayes_fmt *, long)) hastings_rati… in which_mig_prior()
246 …hastings_ratiomig = (MYREAL (*) (MYREAL, MYREAL, MYREAL, MYREAL, bayes_fmt *, long )) hastings_rat… in which_mig_prior()
253 …hastings_ratiomig = (MYREAL (*) (MYREAL, MYREAL, MYREAL, MYREAL, bayes_fmt *, long)) hastings_rati… in which_mig_prior()
290 …hastings_ratiorate = (MYREAL (*) (MYREAL, MYREAL, MYREAL, MYREAL, bayes_fmt *, long)) hastings_rat… in which_rate_prior()
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H A Dbroyden.c77 MYREAL probG2 (MYREAL *param, MYREAL *lparam, MYREAL *sm, MYREAL *kt,
81 MYREAL *apgmax, MYREAL *param, MYREAL *lparam, MYREAL *sm);
89 MYREAL calc_line (helper_fmt * helper, MYREAL a, MYREAL b, MYREAL c,
92 MYREAL psi (MYREAL lamda, helper_fmt * helper, MYREAL *param, MYREAL *lparam);
122 MYREAL normal_func_gradient_ok(MYREAL p1, MYREAL p0);
123 MYREAL normal_func_gradient_no(MYREAL p1, MYREAL p0);
127 MYREAL (*normal_func)(MYREAL *, MYREAL *, long);
128 MYREAL (*normal_func_gradient)(MYREAL, MYREAL);
142 calc_dv (MYREAL *dv, MYREAL **hess, MYREAL *gxv, long n) in calc_dv()
201 MYREAL low, MYREAL mid, MYREAL high, in quadratic_constants()
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H A Dgammalike.c51 MYREAL loggf (MYREAL r, MYREAL alpha, MYREAL theta1);
61 MYREAL dt_locus_gsum (long which, MYREAL x, MYREAL *param, nr_fmt * nr,
65 MYREAL
66 gamma_loci_like(helper_fmt *helper, MYREAL *oparam, MYREAL *olparam, MYREAL denom) in gamma_loci_like()
84 MYREAL find_gamma_summ(MYREAL la, MYREAL theta1, nr_fmt *nr, MYREAL *oparam, MYREAL *olparam,
88 MYREAL
141 MYREAL
215 MYREAL find_gamma_summ(MYREAL lla, MYREAL theta1, nr_fmt *nr, MYREAL *oparam, MYREAL *olparam, in find_gamma_summ()
245 MYREAL
246 gamma_locus_like (nr_fmt * nr, MYREAL *oparam, MYREAL *olparam, MYREAL denom, in gamma_locus_like()
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H A Dslice.c76 extern MYREAL norm (MYREAL *d, long size);
123 MYREAL slice (MYREAL *startval, long which, world_fmt * world, MYREAL (*func) (MYREAL, MYREAL, bay… in slice() argument
131 MYREAL x; in slice()
133 MYREAL y; in slice()
134 MYREAL r; in slice()
251 MYREAL expslice (MYREAL *startval, long which, world_fmt * world, MYREAL (*func) (MYREAL, MYREAL, … in expslice() argument
449 void sphere_random(MYREAL *lower, MYREAL *values, MYREAL *upper, in sphere_random()
450 MYREAL *r, MYREAL stick, long numparam, MYREAL *minparam, MYREAL *maxparam) in sphere_random()
465 void sphere_x_random(MYREAL *lower, MYREAL *values, MYREAL *upper, in sphere_x_random()
466 MYREAL *r, long numparam, MYREAL * minparam, MYREAL * maxparam) in sphere_x_random()
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H A Dfst.c59 void solveNm_vartheta (MYREAL *fw, MYREAL *fb, long numpop, MYREAL *params);
60 void solveNm_varm (MYREAL *fw, MYREAL *fb, long numpop, MYREAL *params);
61 void solveNm_sym (MYREAL *fw, MYREAL *fb, long numpop, MYREAL *params);
64 static void (*solveNm) (MYREAL *, MYREAL *, long, MYREAL *);
74 (void (*)(MYREAL *, MYREAL *, long, MYREAL *)) solveNm_vartheta; in fst_type()
77 solveNm = (void (*)(MYREAL *, MYREAL *, long, MYREAL *)) solveNm_varm; in fst_type()
81 solveNm = (void (*)(MYREAL *, MYREAL *, long, MYREAL *)) solveNm_sym; in fst_type()
216 calc_fw (MYREAL ***f, long numpop, long locus, MYREAL *fw) in calc_fw()
316 solveNm_varm (MYREAL *fw, MYREAL *fb, long numpop, MYREAL *params) in solveNm_varm()
361 solveNm_vartheta (MYREAL *fw, MYREAL *fb, long numpop, MYREAL *params) in solveNm_vartheta()
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H A Dreporter.c58 void both_chain_means (MYREAL *mc, MYREAL *lc, MYREAL *tc, long len,
60 void calc_gelmanb (MYREAL *gelmanb, MYREAL *mc, MYREAL *tc, MYREAL *lc,
62 void calc_gelmanw (MYREAL *gelmanw, world_fmt * world, MYREAL *mc, MYREAL *tc,
64 void calc_gelmanr (MYREAL *gelmanr, MYREAL *gelmanw, MYREAL *gelmanb,
73 void calc_gelmanw2 (MYREAL *gelmanw, MYREAL *s1, MYREAL *s2, long len);
257 both_chain_means (MYREAL *mc, MYREAL *lc, MYREAL *tc, long len, long lastn, in both_chain_means()
295 calc_gelmanb (MYREAL *gelmanb, MYREAL *mc, MYREAL *tc, MYREAL *lc, long len, in calc_gelmanb()
386 MYREAL *autocorr, MYREAL *effsample) in print_bayes_ess()
566 MYREAL single_chain_var(world_fmt *world, long T, MYREAL *variance, MYREAL *autoc, MYREAL *effsampl… in single_chain_var()
858 calc_gelmanw (MYREAL *gelmanw, world_fmt * world, MYREAL *mc, MYREAL *tc, in calc_gelmanw()
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H A Dpretty.h53 extern void pdf_print_mutationrate_weights(MYREAL *murates, long *segregs, MYREAL *wattersons, long…
61 …ta_fmt *data, option_fmt *options, MYREAL ***freq, MYREAL ** total, MYREAL *grandtotal, MY…
69 …nmin, float binmax, float lx, float ly, float width, float height, boolean nofreq, MYREAL *priors);
70 …s, MYREAL *std, char *set50, char *set95, long bins, float bindelta, float binmin, float binmax, f…
79 extern void pdf_bayes_factor_rawscores(long locus, MYREAL rawtermo, MYREAL beziertermo, MYREAL harm…
80 void pdf_bayes_factor_rawscores_harmo(long locus, MYREAL harmo);
81 …d pdf_bayes_factor(world_fmt *world, MYREAL tsum, MYREAL tsum2, MYREAL hsum, MYREAL asum, long max…
104 extern long prepare_profile_table(char method, long which, MYREAL *likes, MYREAL **param, world_fmt…
108 extern void pdf_print_lrt_header(MYREAL aicfull, long aicfullparamnum, float *page_width, float *…
110 … MYREAL like0, MYREAL like1,MYREAL lrt, MYREAL chiprob, MYREAL chiprob2, MYREAL aic, long df,
H A Djoint-chains.c57 MYREAL *tmp; in create_multiapg0()
59 MYREAL reps = LOG ((MYREAL) (nr->repstop - nr->repstart)); in create_multiapg0()
61 tmp = (MYREAL *) mycalloc (nr->repstop, sizeof (MYREAL)); in create_multiapg0()
98 MYREAL *diff, *oldiff; in interpolate_like()
99 MYREAL delta = 0.; in interpolate_like()
100 MYREAL *oldlike; in interpolate_like()
105 oldlike = (MYREAL *) mycalloc (repdiff, sizeof (MYREAL)); in interpolate_like()
108 newlike = (MYREAL *) mycalloc (repdiff, sizeof (MYREAL)); in interpolate_like()
109 diff = (MYREAL *) mycalloc (repdiff, sizeof (MYREAL)); in interpolate_like()
110 oldiff = (MYREAL *) mycalloc (repdiff, sizeof (MYREAL)); in interpolate_like()
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H A Dreporter.h44 extern void calc_chain_s(MYREAL *cs, MYREAL *cm, world_fmt *world, long replicate);
46 extern void chain_means (MYREAL *thischainmeans, world_fmt * world);
48 extern MYREAL single_chain_var(world_fmt *world, long T, MYREAL *variance, MYREAL *autoc, MYREAL *e…
49 extern boolean max_ess(const MYREAL * ess, const long n, const MYREAL minimum, MYREAL *miness);
51 MYREAL *autocorr, MYREAL *effsample);
52 …d calculate_ess_frombayes(world_fmt *world, long T, MYREAL *params, long locus, MYREAL *autoc, MYR…
H A Dprofile.c64 long find_profilelike (MYREAL testlike, MYREAL prob, long whichprob, MYREAL minparam,
65 MYREAL maxparam, MYREAL **testparam, MYREAL *llike,
81 MYREAL interpolate (MYREAL xl, MYREAL xc, MYREAL xh, MYREAL low,
82 MYREAL center, MYREAL high, MYREAL testlike);
97 MYREAL *diff, MYREAL *diff2, long *diagn, MYREAL *work,
111 void calc_spline_diff (MYREAL *diff, MYREAL *param, MYREAL *likes, long n);
113 MYREAL recalc_profilelike (MYREAL testparam, MYREAL *param, MYREAL *like,
114 long nn, MYREAL *diff, MYREAL *diff2, MYREAL *work,
1374 calc_spline_diff (MYREAL *diff, MYREAL *param, MYREAL *likes, long n) in calc_spline_diff()
1613 MYREAL maxparam, MYREAL **testparam, MYREAL *llike, in find_profilelike()
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H A Dsort.c80 if (*(MYREAL *) v1 < *(MYREAL *) v2) in numcmp()
86 if (*(MYREAL *) v1 > *(MYREAL *) v2) in numcmp()
98 if (((MYREAL *) v1)[1] < ((MYREAL *) v2)[1]) in paircmp()
104 if (((MYREAL *) v1)[1] > ((MYREAL *) v2)[1]) in paircmp()
116 if (((MYREAL *) v1)[0] < ((MYREAL *) v2)[0]) in paircmp_first()
122 if (((MYREAL *) v1)[0] > ((MYREAL *) v2)[0]) in paircmp_first()
223 MYREAL xa = xx->age; in agecmp()
224 MYREAL ya = yy->age; in agecmp()
281 MYREAL xx = (MYREAL) *((MYREAL *) x); in searchagecmp()
282 MYREAL age = (MYREAL) ((vtlist *) y)->age; in searchagecmp()
H A Dinthp.c30 int inthp (MYREAL *a, MYREAL *b, MYREAL *d__, MYREAL (*f) (MYREAL, void *),
31 long *m, MYREAL *p, MYREAL *eps, long *inf, void *helper,
32 MYREAL *quadr);
37 inthp (MYREAL *a, MYREAL *b, MYREAL *d__, MYREAL (*f) (MYREAL, void *), in inthp() argument
38 long *m, MYREAL *p, MYREAL *eps, long *inf, void *helper, in inthp()
39 MYREAL *quadr) in inthp()
42 MYREAL r__1; in inthp()
43 MYREAL zero = ZERO; in inthp()
483 h0 = -(MYREAL) h0; in inthp()
486 h__ = -(MYREAL) h__; in inthp()
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H A Dslice.h29 extern MYREAL slice (MYREAL *startval, long which, world_fmt * world, MYREAL (*func) (MYREAL, MYRE…
30 extern MYREAL expslice (MYREAL *startval, long which, world_fmt * world, MYREAL (*func) (MYREAL, M…
31 extern void expallslice (MYREAL *values, MYREAL *rateval, long which, world_fmt * world);
H A Dcorrelation.c49 *v = (MYREAL **) mycalloc (size1, sizeof (MYREAL *)); in doublevec2d()
50 (*v)[0] = (MYREAL *) mycalloc (size1 * size2, sizeof (MYREAL)); in doublevec2d()
72 MYREAL nk = 0; in covarianceBayes()
73 MYREAL *x; in covarianceBayes()
74 MYREAL *xn; in covarianceBayes()
75 MYREAL **cn; in covarianceBayes()
76 MYREAL *n; in covarianceBayes()
81 n = (MYREAL *) mycalloc(nn,sizeof(MYREAL)); in covarianceBayes()
127 MYREAL sqrtcovkk; in correlationBayes()
158 MYREAL **cov; in covariance_summary()
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H A Dtools.c79 MYREAL incompletegamma (MYREAL tx, MYREAL talpha);
80 MYREAL polygamma (long n, MYREAL z);
82 boolean nrcheck (MYREAL **m, MYREAL **tm, MYREAL *v, long nrows, MYREAL *r1,
84 MYREAL rannor (MYREAL mean, MYREAL sd);
87 MYREAL calc_sum (MYREAL *vector, long n);
92 MYREAL mylgamma (MYREAL z);
97 void onepass_mean_std_calc(MYREAL *mean, MYREAL *std, long *n, MYREAL x);
103 MYREAL bezier(MYREAL x0, MYREAL y0, MYREAL x1, MYREAL y1);
159 MYREAL alnorm (MYREAL x, int up);
2007 nrcheck (MYREAL **m, MYREAL **tm, MYREAL *v, long nrows, MYREAL *r1, in nrcheck()
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