| /dports/biology/ncbi-toolkit/ncbi/algo/blast/api/ |
| H A D | blast_seqalign.c | 38 extern ScorePtr MakeBlastScore (ScorePtr PNTR old, CharPtr scoretype,
95 MakeBlastScore(&score_set, "score", 0.0, score); in GetScoreSetFromBlastHsp()
101 MakeBlastScore(&score_set, scoretype, 0.0, score); in GetScoreSetFromBlastHsp()
112 MakeBlastScore(&score_set, scoretype, prob, 0); in GetScoreSetFromBlastHsp()
117 MakeBlastScore(&score_set, "bit_score", hsp->bit_score, 0); in GetScoreSetFromBlastHsp()
120 MakeBlastScore(&score_set, "num_ident", 0.0, hsp->num_ident); in GetScoreSetFromBlastHsp()
123 MakeBlastScore(&score_set, "comp_adjustment_method",0.0, in GetScoreSetFromBlastHsp()
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| /dports/biology/ncbi-toolkit/ncbi/tools/ |
| H A D | kappa.c | 528 MakeBlastScore(&score_set, "score", 0.0, score); in Kappa_GetScoreSetFromBlastHsp()
533 MakeBlastScore(&score_set, "sum_n", 0.0, hsp->num); in Kappa_GetScoreSetFromBlastHsp()
534 MakeBlastScore(&score_set, "sum_e", evalue, 0); in Kappa_GetScoreSetFromBlastHsp()
536 MakeBlastScore(&score_set, "small_gap", 0.0, 1); in Kappa_GetScoreSetFromBlastHsp()
539 MakeBlastScore(&score_set, "e_value", evalue, 0); in Kappa_GetScoreSetFromBlastHsp()
545 MakeBlastScore(&score_set, "bit_score", bit_score, 0); in Kappa_GetScoreSetFromBlastHsp()
550 MakeBlastScore(&score_set, "splice_junction", 0.0, 1); in Kappa_GetScoreSetFromBlastHsp()
554 MakeBlastScore(&score_set, "num_ident", 0.0, hsp->num_ident); in Kappa_GetScoreSetFromBlastHsp()
557 MakeBlastScore(&score_set, "comp_adjustment_method",0.0, in Kappa_GetScoreSetFromBlastHsp()
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| H A D | impatool.c | 499 MakeBlastScore(&returnScore,"score",0.0, rawScore); in addScoresToSeqAlign()
500 MakeBlastScore(&returnScore,"e_value",eValue,0); in addScoresToSeqAlign()
502 MakeBlastScore(&returnScore,"bit_score",bitScoreUnrounded, 0); in addScoresToSeqAlign()
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| H A D | blastkar.h | 614 ScorePtr MakeBlastScore PROTO((ScorePtr PNTR old, CharPtr scoretype, Nlm_FloatHi prob, Int4 score));
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| H A D | pseed3.c | 1133 MakeBlastScore(&returnScore,"score",0.0, rawScore); in putScoresInSeqAlign()
1134 MakeBlastScore(&returnScore,"e_value",eValue,0); in putScoresInSeqAlign()
1136 MakeBlastScore(&returnScore,"bit_score",bitScoreUnrounded, 0); in putScoresInSeqAlign()
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| H A D | blastutl.c | 11227 MakeBlastScore(&sap->score, "warning", expect_low, 0); in BlastPruneSeqAlignByEvalueRange()
12263 MakeBlastScore(&score_set, "score", 0.0, score); in GetScoreSetFromBlastResultHsp()
12269 MakeBlastScore(&score_set, scoretype, 0.0, score); in GetScoreSetFromBlastResultHsp()
12284 MakeBlastScore(&score_set, scoretype, prob, 0); in GetScoreSetFromBlastResultHsp()
12289 MakeBlastScore(&score_set, "bit_score", prob, 0); in GetScoreSetFromBlastResultHsp()
12292 MakeBlastScore(&score_set, "num_ident", 0.0, hsp->num_ident); in GetScoreSetFromBlastResultHsp()
12296 MakeBlastScore(&score_set, "small_gap", 0.0, 1); in GetScoreSetFromBlastResultHsp()
12299 MakeBlastScore(&score_set, "splice_junction", 0.0, 1); in GetScoreSetFromBlastResultHsp()
12304 MakeBlastScore(&score_set, "use_this_gi", 0.0, gi_list->data.intvalue); in GetScoreSetFromBlastResultHsp()
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| H A D | blastkar.c | 5001 MakeBlastScore (ScorePtr PNTR old, CharPtr scoretype, Nlm_FloatHi prob, Int4 score) in MakeBlastScore() function
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