Searched refs:MarukiLowModel (Results 1 – 3 of 3) sorted by relevance
| /dports/biology/stacks/stacks-2.4/src/ |
| H A D | models.cc | 712 double MarukiLowModel::calc_fixed_lnl(double n_tot, double n_M_tot) const { in calc_fixed_lnl()
721 double MarukiLowModel::calc_dimorph_lnl(double freq_MM, double freq_Mm, double freq_mm, const vecto… in calc_dimorph_lnl()
732 double MarukiLowModel::calc_ln_weighted_sum(double freq_MM, double freq_Mm, double freq_mm, const L… in calc_ln_weighted_sum()
746 double MarukiLowModel::calc_ln_weighted_sum_safe(double freq_MM, double freq_Mm, double freq_mm, co… in calc_ln_weighted_sum_safe()
764 SiteCall MarukiLowModel::call(const SiteCounts& depths) const { in call()
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| H A D | models.h | 186 class MarukiLowModel : public Model {
218 MarukiLowModel(double gt_alpha, double var_alpha) in MarukiLowModel() function
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| H A D | gstacks.cc | 779 const MarukiLowModel* m = dynamic_cast<const MarukiLowModel*>(model.get()); in main()
3191 case marukilow: model.reset(new MarukiLowModel(gt_alpha, var_alpha)); break; in parse_command_line()
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