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Searched refs:MolecState (Results 1 – 22 of 22) sorted by relevance

/dports/science/smoldyn/smoldyn-2.67/source/Smoldyn/
H A Dsmoldynfuncs.h56 enum MolecState molstring2ms(char *string);
57 char *molms2string(enum MolecState ms,char *string);
63 int molismobile(simptr sim,int species,enum MolecState ms);
80 void molsetexist(simptr sim,int ident,enum MolecState ms,int exist);
81 int molcount(simptr sim,int i,int *index,enum MolecState ms,int max);
85 double MolCalcDifcSum(simptr sim,int i1,enum MolecState ms1,int i2,enum MolecState ms2);
153 int rxnisprod(simptr sim,int i,enum MolecState ms,int code);
230 int issurfprod(simptr sim,int i,enum MolecState ms);
231 …dex2tristate(enum MolecState ms3,enum PanelFace face,enum MolecState ms4,enum MolecState *msptr,en…
257 …rate(surfaceptr srf,int ident,const int *index,enum MolecState ms,enum MolecState ms1,enum MolecSt…
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H A Dsmolmolec.c76 enum MolecState ans; in molstring2ms()
133 enum MolecState ms; in molstring2pattern()
863 else {mslo=(enum MolecState)(0);mshi=(enum MolecState)(MSMAX);} in molsetdifc()
892 else {mslo=(enum MolecState)(0);mshi=(enum MolecState)(MSMAX);} in molsetdifm()
929 else {mslo=(enum MolecState)(0);mshi=(enum MolecState)(MSMAX);} in molsetdrift()
964 else {mslo=(enum MolecState)(1);mshi=(enum MolecState)(MSMAX);} in molsetsurfdrift()
1015 else {mslo=(enum MolecState)(0);mshi=(enum MolecState)(MSMAX);} in molsetdisplaysize()
1064 for(ms1=(enum MolecState)0;ms1<(enum MolecState)MSMAX1;ms1=(enum MolecState)(ms1+1)) in molsetlistlookup()
1077 for(ms1=(enum MolecState)0;ms1<(enum MolecState)MSMAX1;ms1=(enum MolecState)(ms1+1)) in molsetlistlookup()
2564 for(ms4=(enum MolecState)0;ms4<(enum MolecState)MSMAX1;ms4=(enum MolecState)(ms4+1)) { in molgeneratespecies()
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H A Dlibsmoldyn.h103 enum ErrorCode smolSetSpeciesMobility(simptr sim,const char *species,enum MolecState state,double d…
104 enum ErrorCode smolSetMoleculeColor(simptr sim, const char *species, enum MolecState state, double …
105 enum ErrorCode smolSetMoleculeSize(simptr sim, const char *species, enum MolecState state, double s…
112 enum ErrorCode smolSetMolList(simptr sim,const char *species,enum MolecState state,const char *moll…
116 enum ErrorCode smolAddSurfaceMolecules(simptr sim,const char *species,enum MolecState state,int num…
117 int smolGetMoleculeCount(simptr sim,const char *species,enum MolecState state);
118 enum ErrorCode smolSetMoleculeStyle(simptr sim,const char *species,enum MolecState state,double siz…
128 …r sim,const char *surface,enum PanelFace face,const char *species,enum MolecState state,enum SrfAc…
129 …sim,const char *surface,const char *species,enum MolecState state,enum MolecState state1,enum Mole…
152 …*reactant1,enum MolecState rstate1,const char *reactant2,enum MolecState rstate2,int nproduct,cons…
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H A Dsmolrule.c482 enum MolecState *rctstate,*prdstate,ms; in RuleExpandRules()
563 ms=(enum MolecState) detailsi[0]; in RuleExpandRules()
569 ms=(enum MolecState) detailsi[0]; in RuleExpandRules()
575 ms=(enum MolecState) detailsi[0]; in RuleExpandRules()
581 ms=(enum MolecState) detailsi[0]; in RuleExpandRules()
587 ms=(enum MolecState) detailsi[0]; in RuleExpandRules()
593 ms=(enum MolecState) detailsi[0]; in RuleExpandRules()
599 ms=(enum MolecState) detailsi[0]; in RuleExpandRules()
605 ms=(enum MolecState) detailsi[0]; in RuleExpandRules()
612 ms=(enum MolecState) detailsi[0]; in RuleExpandRules()
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H A Dsmolreact.c44 enum MolecState rxnpackstate(int order,enum MolecState *mstate);
45 void rxnunpackstate(int order,enum MolecState mspack,enum MolecState *mstate);
249 enum MolecState rxnpackstate(int order,enum MolecState *mstate) { in rxnpackstate()
266 enum MolecState ms; in rxnallstates()
271 for(ms=(enum MolecState)0;ms<(enum MolecState)nms2o && rxn->permit[ms];ms=(enum MolecState)(ms+1)); in rxnallstates()
538 enum MolecState ms; in rxnalloc()
579 …for(ms=(enum MolecState)0;ms<(enum MolecState)nms2o;ms=(enum MolecState)(ms+1)) rxn->permit[ms]=0;… in rxnalloc()
784 for(ms=(enum MolecState)0;ms<nms2o;ms=(enum MolecState)(ms + 1)) { in rxnoutput()
963 for(ms=(enum MolecState)0;ms<MSMAX;ms=(enum MolecState)(ms+1)) in writereactions()
1323 for(ms1=(enum MolecState)0;ms1<MSMAX;ms1=(enum MolecState)(ms1+1)) in rxnsetrate()
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H A Dsmolsurface.c48 int srfsamestate(enum MolecState ms1,enum PanelFace face1,enum MolecState ms2,enum MolecState *ms3p…
49 …erseaction(enum MolecState ms1,enum PanelFace face1,enum MolecState ms2,enum MolecState *ms3ptr,en…
50 …istate2index(enum MolecState ms,enum MolecState ms1,enum MolecState ms2,enum MolecState *ms3ptr,en…
581 int srfsamestate(enum MolecState ms1,enum PanelFace face1,enum MolecState ms2,enum MolecState *ms3p… in srfsamestate()
604 …erseaction(enum MolecState ms1,enum PanelFace face1,enum MolecState ms2,enum MolecState *ms3ptr,en… in srfreverseaction()
647 …istate2index(enum MolecState ms,enum MolecState ms1,enum MolecState ms2,enum MolecState *ms3ptr,en… in srftristate2index()
675 …dex2tristate(enum MolecState ms3,enum PanelFace face,enum MolecState ms4,enum MolecState *msptr,en… in srfindex2tristate()
1047 for(ms=(enum MolecState)0;ms<MSMAX;ms=(enum MolecState)(ms+1)) in surfacealloc()
1060 for(ms=(enum MolecState)0;ms<MSMAX;ms=(enum MolecState)(ms+1)) in surfacealloc()
1122 for(ms=(enum MolecState)0;ms<MSMAX;ms=(enum MolecState)(ms+1)) in surfacefree()
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H A Dsmolbng.c123 enum MolecState *mslist; in bngalloc()
235 CHECKMEM(mslist=(enum MolecState *)calloc(newmax,sizeof(enum MolecState))); in bngalloc()
270 CHECKMEM(mslist=(enum MolecState *)calloc(newmax,sizeof(enum MolecState))); in bngalloc()
695 enum MolecState newstate; in bngaddmonomer()
880 enum MolecState ms,trialms; in bngmakedefaultstate()
911 enum MolecState ms; in bngmakedifc()
943 enum MolecState ms; in bngmakedisplaysize()
972 enum MolecState ms; in bngmakecolor()
1011 enum MolecState ms; in bngmakesurfaction()
1138 for(ms4=(enum MolecState)0;ms4<(enum MolecState)MSMAX1;ms4=(enum MolecState)(ms4+1)) { in bngparsespecies()
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H A Dsmoldyn.h234 enum MolecState enum
272 enum MolecState mstate; // physical state of molecule (ms)
377 enum MolecState* rctstate; // list of reactant states [rct]
381 enum MolecState* prdstate; // list of product states [prd]
920 enum MolecState* monomerstate; // default monomer state [index]
929 enum MolecState* bspstate; // default species state [index]
H A Dsmolcmd.c500 enum MolecState ms; in cmdifno()
519 enum MolecState ms; in cmdifless()
541 enum MolecState ms; in cmdifmore()
563 enum MolecState ms; in cmdifincmpt()
612 enum MolecState ms; in cmdifchange()
668 enum MolecState ms; in cmdwarnescapee()
720 enum MolecState ms; in cmdwarnescapeecmpt()
908 enum MolecState ms; in fnmolcount()
944 enum MolecState ms; in fnmolcountonsurf()
1173 enum MolecState ms; in cmdmolcountincmpt2()
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H A Dlibsmoldyn.cpp885 enum MolecState ms; in smolGetSpecies()
900 for(ms=(enum MolecState)0;ms<(enum MolecState)MSMAX;ms=(enum MolecState)(ms+1)) { in smolGetSpecies()
1016 extern CSTRING enum ErrorCode smolSetMolList(simptr sim,const char *species,enum MolecState state,c… in smolSetMolList()
1132 extern CSTRING int smolGetMoleculeCount(simptr sim,const char *species,enum MolecState state) { in smolGetMoleculeCount()
1147 simptr sim, const char *species, enum MolecState state, double *color) in smolSetMoleculeColor()
1174 simptr sim, const char *species, enum MolecState state, double size) in smolSetMoleculeSize()
1196 extern CSTRING enum ErrorCode smolSetMoleculeStyle(simptr sim,const char *species,enum MolecState s… in smolSetMoleculeStyle()
1338 …sim,const char *surface,const char *species,enum MolecState state,enum MolecState state1,enum Mole… in smolSetSurfaceRate()
1774 …*reactant1,enum MolecState rstate1,const char *reactant2,enum MolecState rstate2,int nproduct,cons… in smolAddReaction()
1778 enum MolecState rctstate[MAXORDER]; in smolAddReaction()
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H A Dsmoldynhybrid.c27 double evaluateSurfActionRate(simptr sim, surfactionptr actdetails, MolecState ms, double* pos, cha… in evaluateSurfActionRate()
H A Dsmolport.c418 int portgetmols(simptr sim,portptr port,int ident,enum MolecState ms,int remove) { in portgetmols()
436 int portgetmols2(simptr sim,portptr port,int ident,enum MolecState ms,int remove, double **position… in portgetmols2()
H A Dsmolgraphics.c567 enum MolecState ms; in graphicssettextitem()
1160 enum MolecState ms; in RenderMolecs()
1261 enum MolecState ms; in RenderText()
H A Dsmollattice.c702 enum MolecState ms; in latticereadstring()
H A Dsmolcomparts.c1224 enum MolecState ms; in comparttranslate()
H A Dsmolsim.cpp572 enum MolecState ms,rctstate[MAXORDER]; in simreadstring()
/dports/science/smoldyn/smoldyn-2.67/source/python/
H A Dmodule.cpp161 .value("up", MolecState::MSup) in PYBIND11_MODULE()
712 MolecState state, in PYBIND11_MODULE()
798 MolecState state, in PYBIND11_MODULE()
826 MolecState state, in PYBIND11_MODULE()
835 MolecState state, in PYBIND11_MODULE()
852 MolecState state, in PYBIND11_MODULE()
909 MolecState state, in PYBIND11_MODULE()
930 MolecState state, in PYBIND11_MODULE()
931 MolecState state1, in PYBIND11_MODULE()
932 MolecState state2, in PYBIND11_MODULE()
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/dports/science/smoldyn/smoldyn-2.67/source/python/smoldyn/
H A Dsmoldyn.py72 def _toMS(st: Union[str, _smoldyn.MolecState]) -> _smoldyn.MolecState: argument
81 return _smoldyn.MolecState.__members__[st] if isinstance(st, str) else st
136 if state not in _smoldyn.MolecState.__members__:
189 _smoldyn.MolecState.__members__[state]
247 size = {_smoldyn.MolecState.all: size}
251 _smoldyn.MolecState.__members__[state]
293 state = _smoldyn.MolecState.__members__["none"]
303 SpeciesState = Union[_smoldyn.MolecState, str]
828 sname, sstate = sp, _smoldyn.MolecState.soln
831 sstate = _smoldyn.MolecState.__members__[sstate]
/dports/science/smoldyn/smoldyn-2.67/examples/S97_libsmoldyn/
H A Dtest1.c29 enum MolecState states[1] = {MSsoln}; in main()
/dports/science/smoldyn/smoldyn-2.67/tests/
H A Dtest_libsmoldyn.py33 MS = CppApi.MolecState # enum MolcState
/dports/science/smoldyn/smoldyn-2.67/examples/S97_libsmoldyn/testcode/
H A Dtestcode.c31 enum MolecState prodstates[2]; in main()
/dports/science/smoldyn/smoldyn-2.67/examples/S15_python/
H A DDimensionalityEffect.py26 MS = S.MolecState