Searched refs:NA12878_chr17_1k_CRAM (Results 1 – 3 of 3) sorted by relevance
| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/engine/spark/datasources/ |
| H A D | ReadsSparkSourceUnitTest.java | 42 {NA12878_chr17_1k_CRAM, v37_chr17_1Mb_Reference}, in loadReads()
59 {NA12878_chr17_1k_CRAM, v37_chr17_1Mb_Reference}, in loadReadsValidation()
86 …ReadsSparkSource.checkCramReference(ctx, new GATKPath(NA12878_chr17_1k_CRAM), new GATKPath(v37_chr… in testCheckCRAMReference()
171 doLoadReadsTest(NA12878_chr17_1k_CRAM, b37_2bit_reference_20_21); in testReject2BitCRAMReference()
176 doLoadReadsTest(NA12878_chr17_1k_CRAM, null); in testCRAMReferenceRequired()
216 final GATKPath cramSpecifier = new GATKPath(NA12878_chr17_1k_CRAM); in testCRAMReferenceFromHDFS()
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| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/ |
| H A D | GATKBaseTest.java | 99 …public static final String NA12878_chr17_1k_CRAM = publicTestDir + "NA12878.chr17_69k_70k.dictFix.… field in GATKBaseTest
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| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/engine/ |
| H A D | GATKToolUnitTest.java | 469 {NA12878_chr17_1k_CRAM, v37_chr17_1Mb_Reference, 493} in validationStringency()
480 final File bamFile = new File(NA12878_chr17_1k_CRAM); in testValidationStringency()
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