| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/align_format/unit_test/ |
| H A D | aln_printer_unit_test.cpp | 186 "bimA") != NPOS); in BOOST_FIXTURE_TEST_SUITE()
211 BOOST_REQUIRE(output.find("*") != NPOS); in BOOST_AUTO_TEST_CASE()
220 "CGGTG") != NPOS); in BOOST_AUTO_TEST_CASE()
246 != NPOS); in BOOST_AUTO_TEST_CASE()
309 != NPOS); in BOOST_AUTO_TEST_CASE()
315 != NPOS); in BOOST_AUTO_TEST_CASE()
320 != NPOS); in BOOST_AUTO_TEST_CASE()
328 != NPOS); in BOOST_AUTO_TEST_CASE()
329 BOOST_REQUIRE(output.find("END;") != NPOS); in BOOST_AUTO_TEST_CASE()
355 != NPOS); in BOOST_AUTO_TEST_CASE()
[all …]
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| H A D | showalign_unit_test.cpp | 111 BOOST_REQUIRE(output.find("XP_011512980.1") != NPOS); in BOOST_AUTO_TEST_CASE()
112 BOOST_REQUIRE(output.find("NP_004146.1") != NPOS); in BOOST_AUTO_TEST_CASE()
113 BOOST_REQUIRE(output.find("AAH96218.1") != NPOS); in BOOST_AUTO_TEST_CASE()
144 BOOST_REQUIRE(output.find("NP_001263315.1") != NPOS); in BOOST_AUTO_TEST_CASE()
145 BOOST_REQUIRE(output.find("XP_015137661.1") != NPOS); in BOOST_AUTO_TEST_CASE()
146 BOOST_REQUIRE(output.find("AUD54591.1") != NPOS); in BOOST_AUTO_TEST_CASE()
147 BOOST_REQUIRE(output.find("BAM13279.1") != NPOS); in BOOST_AUTO_TEST_CASE()
148 BOOST_REQUIRE(output.find("P01014.1") != NPOS); in BOOST_AUTO_TEST_CASE()
185 BOOST_REQUIRE(output.find(">AE000304.1 ") != NPOS); in TestSimpleAlignment()
193 BOOST_REQUIRE(output.find("Length=11852") != NPOS); in TestSimpleAlignment()
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| H A D | tabularinof_unit_test.cpp | 99 BOOST_REQUIRE(output.find("# BLAST processed 1 queries") != NPOS); in BOOST_AUTO_TEST_CASE()
166 BOOST_REQUIRE(output.find("AE000111 AE000111 100.000 19568") != NPOS); in BOOST_AUTO_TEST_CASE()
167 BOOST_REQUIRE(output.find("AE000111 AE000310 94.595 56.5") != NPOS); in BOOST_AUTO_TEST_CASE()
168 BOOST_REQUIRE(output.find("AE000111 AE000509 80.508 76.8") != NPOS); in BOOST_AUTO_TEST_CASE()
199 BOOST_REQUIRE(output.find("AE000111 AE000111 10596 100.000 10596") != NPOS); in BOOST_AUTO_TEST_CASE()
201 BOOST_REQUIRE(output.find("AE000111 AE000116 48 98.039 12GA38") != NPOS); in BOOST_AUTO_TEST_CASE()
246 BOOST_REQUIRE(output.find(ref[i]) != NPOS); in BOOST_AUTO_TEST_CASE()
257 BOOST_REQUIRE(output.find(single_tax[i]) != NPOS); in BOOST_AUTO_TEST_CASE()
301 BOOST_REQUIRE_MESSAGE(output.find(ref[i]) != NPOS, msg); in BOOST_AUTO_TEST_CASE()
327 BOOST_REQUIRE_MESSAGE(output.find(ref[i]) != NPOS, msg); in BOOST_AUTO_TEST_CASE()
[all …]
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/align_format/unit_test/ |
| H A D | aln_printer_unit_test.cpp | 186 "bimA") != NPOS); in BOOST_FIXTURE_TEST_SUITE()
211 BOOST_REQUIRE(output.find("*") != NPOS); in BOOST_AUTO_TEST_CASE()
220 "CGGTG") != NPOS); in BOOST_AUTO_TEST_CASE()
246 != NPOS); in BOOST_AUTO_TEST_CASE()
309 != NPOS); in BOOST_AUTO_TEST_CASE()
315 != NPOS); in BOOST_AUTO_TEST_CASE()
320 != NPOS); in BOOST_AUTO_TEST_CASE()
328 != NPOS); in BOOST_AUTO_TEST_CASE()
329 BOOST_REQUIRE(output.find("END;") != NPOS); in BOOST_AUTO_TEST_CASE()
355 != NPOS); in BOOST_AUTO_TEST_CASE()
[all …]
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| H A D | showalign_unit_test.cpp | 111 BOOST_REQUIRE(output.find("XP_011512980.1") != NPOS); in BOOST_AUTO_TEST_CASE()
112 BOOST_REQUIRE(output.find("NP_004146.1") != NPOS); in BOOST_AUTO_TEST_CASE()
113 BOOST_REQUIRE(output.find("AAH96218.1") != NPOS); in BOOST_AUTO_TEST_CASE()
144 BOOST_REQUIRE(output.find("NP_001263315.1") != NPOS); in BOOST_AUTO_TEST_CASE()
145 BOOST_REQUIRE(output.find("XP_015137661.1") != NPOS); in BOOST_AUTO_TEST_CASE()
146 BOOST_REQUIRE(output.find("AUD54591.1") != NPOS); in BOOST_AUTO_TEST_CASE()
147 BOOST_REQUIRE(output.find("BAM13279.1") != NPOS); in BOOST_AUTO_TEST_CASE()
148 BOOST_REQUIRE(output.find("P01014.1") != NPOS); in BOOST_AUTO_TEST_CASE()
185 BOOST_REQUIRE(output.find(">AE000304.1 ") != NPOS); in TestSimpleAlignment()
193 BOOST_REQUIRE(output.find("Length=11852") != NPOS); in TestSimpleAlignment()
[all …]
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| H A D | tabularinof_unit_test.cpp | 99 BOOST_REQUIRE(output.find("# BLAST processed 1 queries") != NPOS); in BOOST_AUTO_TEST_CASE()
166 BOOST_REQUIRE(output.find("AE000111 AE000111 100.000 19568") != NPOS); in BOOST_AUTO_TEST_CASE()
167 BOOST_REQUIRE(output.find("AE000111 AE000310 94.595 56.5") != NPOS); in BOOST_AUTO_TEST_CASE()
168 BOOST_REQUIRE(output.find("AE000111 AE000509 80.508 76.8") != NPOS); in BOOST_AUTO_TEST_CASE()
199 BOOST_REQUIRE(output.find("AE000111 AE000111 10596 100.000 10596") != NPOS); in BOOST_AUTO_TEST_CASE()
201 BOOST_REQUIRE(output.find("AE000111 AE000116 48 98.039 12GA38") != NPOS); in BOOST_AUTO_TEST_CASE()
246 BOOST_REQUIRE(output.find(ref[i]) != NPOS); in BOOST_AUTO_TEST_CASE()
257 BOOST_REQUIRE(output.find(single_tax[i]) != NPOS); in BOOST_AUTO_TEST_CASE()
301 BOOST_REQUIRE_MESSAGE(output.find(ref[i]) != NPOS, msg); in BOOST_AUTO_TEST_CASE()
327 BOOST_REQUIRE_MESSAGE(output.find(ref[i]) != NPOS, msg); in BOOST_AUTO_TEST_CASE()
[all …]
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| /dports/math/mumps/mumps-5.1.2/src/ |
| H A D | zfac_mem_stack_aux.F | 91 INTEGER(8) :: APOS, NPOS local
101 NPOS = IPTRLU + SIZECB
106 NPOS = NPOS
110 NPOS = NPOS - ( int(NBROW_ALREADY_STACKED,8) *
122 NPOS = NPOS - int(NBCOL_STACK,8)
131 A(NPOS - J + 1_8) = ZERO
134 NPOS = NPOS + int(- NBCOL_STACK + I,8)
142 NPOS = NPOS - int(I,8)
185 A(NPOS+J-1_8) = A(APOS+J-1_8)
189 A(NPOS+J-1_8)=A(APOS+J-1_8)
[all …]
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| H A D | cfac_mem_stack_aux.F | 91 INTEGER(8) :: APOS, NPOS local
101 NPOS = IPTRLU + SIZECB
106 NPOS = NPOS
110 NPOS = NPOS - ( int(NBROW_ALREADY_STACKED,8) *
122 NPOS = NPOS - int(NBCOL_STACK,8)
131 A(NPOS - J + 1_8) = ZERO
134 NPOS = NPOS + int(- NBCOL_STACK + I,8)
142 NPOS = NPOS - int(I,8)
185 A(NPOS+J-1_8) = A(APOS+J-1_8)
189 A(NPOS+J-1_8)=A(APOS+J-1_8)
[all …]
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| H A D | sfac_mem_stack_aux.F | 91 INTEGER(8) :: APOS, NPOS local
101 NPOS = IPTRLU + SIZECB
106 NPOS = NPOS
110 NPOS = NPOS - ( int(NBROW_ALREADY_STACKED,8) *
122 NPOS = NPOS - int(NBCOL_STACK,8)
131 A(NPOS - J + 1_8) = ZERO
134 NPOS = NPOS + int(- NBCOL_STACK + I,8)
142 NPOS = NPOS - int(I,8)
185 A(NPOS+J-1_8) = A(APOS+J-1_8)
189 A(NPOS+J-1_8)=A(APOS+J-1_8)
[all …]
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| H A D | dfac_mem_stack_aux.F | 91 INTEGER(8) :: APOS, NPOS local
101 NPOS = IPTRLU + SIZECB
106 NPOS = NPOS
110 NPOS = NPOS - ( int(NBROW_ALREADY_STACKED,8) *
122 NPOS = NPOS - int(NBCOL_STACK,8)
131 A(NPOS - J + 1_8) = ZERO
134 NPOS = NPOS + int(- NBCOL_STACK + I,8)
142 NPOS = NPOS - int(I,8)
185 A(NPOS+J-1_8) = A(APOS+J-1_8)
189 A(NPOS+J-1_8)=A(APOS+J-1_8)
[all …]
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/biblio/ |
| H A D | citation_base.cpp | 73 SIZE_TYPE hyphen_pos = NPOS, lhs_digit_pos = NPOS, lhs_letter_pos = NPOS, in FixPages()
74 digit_pos = NPOS, letter_pos = NPOS; in FixPages()
80 if (digit_pos == NPOS) { in FixPages()
82 } else if (letter_pos > digit_pos && letter_pos != NPOS) { in FixPages()
86 if (letter_pos == NPOS) { in FixPages()
88 } else if (digit_pos > letter_pos && digit_pos != NPOS) { in FixPages()
91 } else if (c == '-' && digit_pos != NPOS && hyphen_pos == NPOS) { in FixPages()
95 digit_pos = letter_pos = NPOS; in FixPages()
106 if (lhs_letter_pos > 0 && lhs_letter_pos != NPOS) { in FixPages()
124 } else if (letter_pos == NPOS && digit_pos != NPOS) { in FixPages()
[all …]
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objects/biblio/ |
| H A D | citation_base.cpp | 73 SIZE_TYPE hyphen_pos = NPOS, lhs_digit_pos = NPOS, lhs_letter_pos = NPOS, in FixPages()
74 digit_pos = NPOS, letter_pos = NPOS; in FixPages()
80 if (digit_pos == NPOS) { in FixPages()
82 } else if (letter_pos > digit_pos && letter_pos != NPOS) { in FixPages()
86 if (letter_pos == NPOS) { in FixPages()
88 } else if (digit_pos > letter_pos && digit_pos != NPOS) { in FixPages()
91 } else if (c == '-' && digit_pos != NPOS && hyphen_pos == NPOS) { in FixPages()
95 digit_pos = letter_pos = NPOS; in FixPages()
106 if (lhs_letter_pos > 0 && lhs_letter_pos != NPOS) { in FixPages()
124 } else if (letter_pos == NPOS && digit_pos != NPOS) { in FixPages()
[all …]
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| /dports/misc/libemos/libemos-4.5.9-Source/interpolation/ |
| H A D | jnorsgg.F | 113 INTEGER J202, NPOS, NPLAT, NGGLAT, IGUESS
154 NPOS = J202
156 NPOS = J202 - KUP
164 NPOS = 2*KNUM
174 IF ( NPOS .LT. 1 ) NPOS = 1
176 JNORSGG = NPOS
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/phy_tree/phytree_format/unit_test/ |
| H A D | phytree_format_unit_test.cpp | 640 BOOST_REQUIRE(output.find("#NEXUS") != NPOS); in BOOST_AUTO_TEST_CASE()
644 != NPOS); in BOOST_AUTO_TEST_CASE()
647 != NPOS); in BOOST_AUTO_TEST_CASE()
660 != NPOS); in BOOST_AUTO_TEST_CASE()
663 != NPOS); in BOOST_AUTO_TEST_CASE()
676 != NPOS); in BOOST_AUTO_TEST_CASE()
679 != NPOS); in BOOST_AUTO_TEST_CASE()
692 != NPOS); in BOOST_AUTO_TEST_CASE()
695 != NPOS); in BOOST_AUTO_TEST_CASE()
710 != NPOS); in BOOST_AUTO_TEST_CASE()
[all …]
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/winmask/ |
| H A D | seq_masker_istat_ascii.cpp | 91 if( name_end == NPOS || val_start == NPOS ) in CSeqMaskerIstatAscii()
103 NStr::StringToUInt(line.substr(val_start, NPOS), 0, 0)); in CSeqMaskerIstatAscii()
107 NStr::StringToUInt(line.substr(val_start, NPOS), 0, 0)); in CSeqMaskerIstatAscii()
111 NStr::StringToUInt(line.substr(val_start, NPOS), 0, 0)); in CSeqMaskerIstatAscii()
115 NStr::StringToUInt(line.substr(val_start, NPOS), 0, 0)); in CSeqMaskerIstatAscii()
132 if( unit_start == NPOS || unit_end == NPOS || cnt_start == NPOS ) in CSeqMaskerIstatAscii()
|
| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/winmask/ |
| H A D | seq_masker_istat_ascii.cpp | 91 if( name_end == NPOS || val_start == NPOS ) in CSeqMaskerIstatAscii()
103 NStr::StringToUInt(line.substr(val_start, NPOS), 0, 0)); in CSeqMaskerIstatAscii()
107 NStr::StringToUInt(line.substr(val_start, NPOS), 0, 0)); in CSeqMaskerIstatAscii()
111 NStr::StringToUInt(line.substr(val_start, NPOS), 0, 0)); in CSeqMaskerIstatAscii()
115 NStr::StringToUInt(line.substr(val_start, NPOS), 0, 0)); in CSeqMaskerIstatAscii()
132 if( unit_start == NPOS || unit_end == NPOS || cnt_start == NPOS ) in CSeqMaskerIstatAscii()
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/data_loaders/bam/test/ |
| H A D | vdb_user_agent.cpp | 83 if ( pos == NPOS ) { in s_GetKey()
191 size_t pos = NPOS; in x_CheckLine()
192 if ( pos == NPOS ) { in x_CheckLine()
194 if ( pos != NPOS ) { in x_CheckLine()
198 if ( pos == NPOS ) { in x_CheckLine()
200 if ( pos != NPOS ) { in x_CheckLine()
204 if ( pos == NPOS ) { in x_CheckLine()
206 if ( pos != NPOS ) { in x_CheckLine()
211 if ( pos == NPOS || end == NPOS ) { in x_CheckLine()
235 if ( p_begin != NPOS && p_end != NPOS ) { in x_CheckLine()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/util/ |
| H A D | seqtitle.cpp | 441 if (title.find("LOW-PASS") == NPOS) { in GetTitle()
476 if (title.find("complete sequence") == NPOS) { in GetTitle()
482 if (title.find("mRNA sequence") == NPOS) { in GetTitle()
773 if (title.find("LOW-PASS") == NPOS) { in GetTitle()
805 if (title.find("mRNA sequence") == NPOS) { in GetTitle()
898 if (pos == NPOS) { in s_EndsWithStrain()
1091 if (lc_name.find("virus") != NPOS || lc_name.find("phage") != NPOS) { in x_TitleFromChromosome()
1139 if (lc_name.find("plasmid") != NPOS) { in x_TitleFromChromosome()
1160 if (segment.find("DNA") == NPOS && segment.find("RNA") == NPOS in x_TitleFromChromosome()
1161 && segment.find("segment") == NPOS in x_TitleFromChromosome()
[all …]
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| H A D | create_defline.cpp | 1441 if (pos == NPOS) { in x_EndsWithStrain()
1445 if (pos == NPOS) { in x_EndsWithStrain()
2249 if (pos != NPOS) { in x_SetTitleFromProteinIdx()
2446 if (pos != NPOS) { in x_SetTitleFromProtein()
2933 if (pos != NPOS) { in s_TrimMainTitle()
2991 return NPOS; in s_TitleEndsInOrganism()
3000 size_t pos, tpos = NPOS, opos = NPOS; in x_AdjustProteinTitleSuffixIdx()
3079 if (opos != NPOS) { in x_AdjustProteinTitleSuffixIdx()
3150 size_t pos, tpos = NPOS, opos = NPOS; in x_AdjustProteinTitleSuffix()
3232 if (opos != NPOS) { in x_AdjustProteinTitleSuffix()
[all …]
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/util/ |
| H A D | seqtitle.cpp | 441 if (title.find("LOW-PASS") == NPOS) { in GetTitle()
476 if (title.find("complete sequence") == NPOS) { in GetTitle()
482 if (title.find("mRNA sequence") == NPOS) { in GetTitle()
773 if (title.find("LOW-PASS") == NPOS) { in GetTitle()
805 if (title.find("mRNA sequence") == NPOS) { in GetTitle()
898 if (pos == NPOS) { in s_EndsWithStrain()
1091 if (lc_name.find("virus") != NPOS || lc_name.find("phage") != NPOS) { in x_TitleFromChromosome()
1139 if (lc_name.find("plasmid") != NPOS) { in x_TitleFromChromosome()
1160 if (segment.find("DNA") == NPOS && segment.find("RNA") == NPOS in x_TitleFromChromosome()
1161 && segment.find("segment") == NPOS in x_TitleFromChromosome()
[all …]
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/cgi/ |
| H A D | user_agent.cpp | 905 if (pos != NPOS) { in x_Parse()
916 if (pos != NPOS) { in x_Parse()
950 if (pos != NPOS) { in x_Parse()
967 if (pos != NPOS) { in x_Parse()
1015 if (pos != NPOS) { in x_Parse()
1036 if (pos != NPOS) { in x_Parse()
1086 if (pos == NPOS) { in x_Parse()
1090 if (pos != NPOS) { in x_Parse()
1101 if (pos != NPOS) { in x_Parse()
1126 if (pos != NPOS) { in x_Parse()
[all …]
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/cgi/ |
| H A D | user_agent.cpp | 905 if (pos != NPOS) { in x_Parse()
916 if (pos != NPOS) { in x_Parse()
950 if (pos != NPOS) { in x_Parse()
967 if (pos != NPOS) { in x_Parse()
1015 if (pos != NPOS) { in x_Parse()
1036 if (pos != NPOS) { in x_Parse()
1086 if (pos == NPOS) { in x_Parse()
1090 if (pos != NPOS) { in x_Parse()
1101 if (pos != NPOS) { in x_Parse()
1126 if (pos != NPOS) { in x_Parse()
[all …]
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/speedtest/ |
| H A D | speedtest.cpp | 564 if (NStr::Find (km, "b") != NPOS) { in Run()
567 if (NStr::Find (km, "s") != NPOS) { in Run()
574 if (NStr::Find (im, "f") != NPOS) { in Run()
581 if (NStr::Find (sm, "S") != NPOS) { in Run()
585 if (NStr::Find (sm, "s") != NPOS) { in Run()
589 if (NStr::Find (sm, "r") != NPOS) { in Run()
592 if (NStr::Find (sm, "D") != NPOS) { in Run()
596 if (NStr::Find (sm, "d") != NPOS) { in Run()
600 if (NStr::Find (sm, "f") != NPOS) { in Run()
603 if (NStr::Find (sm, "t") != NPOS) { in Run()
[all …]
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/corelib/ |
| H A D | ncbi_url.cpp | 71 if (end == NPOS) { in x_SetIndexString()
99 if (err_pos != NPOS) { in SetQueryString()
146 if (mid == NPOS) { in SetQueryString()
157 if (end == NPOS) { in SetQueryString()
392 if (port_end != NPOS) { in x_IsHostPort()
433 if (pos != NPOS) { in SetUrl()
445 if (pos != NPOS) { in SetUrl()
453 if (pos != NPOS) { in SetUrl()
482 pos = NPOS; in SetUrl()
488 if (pos != NPOS) { in SetUrl()
[all …]
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/corelib/ |
| H A D | ncbi_url.cpp | 71 if (end == NPOS) { in x_SetIndexString()
99 if (err_pos != NPOS) { in SetQueryString()
146 if (mid == NPOS) { in SetQueryString()
157 if (end == NPOS) { in SetQueryString()
392 if (port_end != NPOS) { in x_IsHostPort()
433 if (pos != NPOS) { in SetUrl()
445 if (pos != NPOS) { in SetUrl()
453 if (pos != NPOS) { in SetUrl()
482 pos = NPOS; in SetUrl()
488 if (pos != NPOS) { in SetUrl()
[all …]
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