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Searched refs:OccA (Results 1 – 4 of 4) sorted by relevance

/dports/biology/muscle/muscle-3.8.1551/
H A Dglbalignle.cpp22 FCOUNT *OccA; member
73 delete[] DPM.OccA; in AllocDPMem()
85 DPM.OccA = new FCOUNT[uLength]; in AllocDPMem()
142 FCOUNT *OccA = DPM.OccA; in GlobalAlignLE() local
155 OccA[i] = PA[i].m_fOcc; in GlobalAlignLE()
207 MPrev[0] = (logf(scoreSum) - g_scoreCenter)*OccA[0]*OccB[0]; in GlobalAlignLE()
240 MPrev[j] = (logf(scoreSum) - g_scoreCenter)*OccA[0]*OccB[j] + in GlobalAlignLE()
284 const FCOUNT OccAi = OccA[i]; in GlobalAlignLE()
/dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/umuscle/src/muscle/
H A Dglbalignle.cpp82 delete[] DPM.OccA; in AllocDPMem()
94 DPM.OccA = new FCOUNT[uLength]; in AllocDPMem()
155 FCOUNT *OccA = DPM.OccA; in GlobalAlignLE() local
168 OccA[i] = PA[i].m_fOcc; in GlobalAlignLE()
220 MPrev[0] = (logf(scoreSum) - g_scoreCenter)*OccA[0]*OccB[0]; in GlobalAlignLE()
253 MPrev[j] = (logf(scoreSum) - g_scoreCenter)*OccA[0]*OccB[j] + in GlobalAlignLE()
297 const FCOUNT OccAi = OccA[i]; in GlobalAlignLE()
H A Dmuscle_context.h349 FCOUNT *OccA; member
H A Dmuscle_context.cpp508 delete[] glbalignle.DPM.OccA; in ~MuscleContext()