/dports/biology/viennarna/ViennaRNA-2.4.18/src/Kinwalker/ |
H A D | options.c | 12 static OptionS OptS; variable 53 return (&OptS); in decodeCML() 90 OptS.ExeName); in usage() 97 OptS.barrier_heuristic,OptS.dangle, OptS.grouping, OptS.lookahead); in usage() 104 … OptS.maxkeep,OptS.noLonelyPairs,OptS.transcribed, OptS.transcription_rate,OptS.windowsize); in usage() 134 OptS.printfront=0; in initializeOptions() 140 OptS.dangle=0; in initializeOptions() 142 OptS.lookahead=1; in initializeOptions() 144 OptS.maxkeep = 1; in initializeOptions() 172 OptS.testseq = 1; in processOptions() [all …]
|
H A D | main.cpp | 28 OptionS* OptS; in main() local 29 OptS = decodeCML(argc, argv); in main() 36 Node::ProcessOptions(OptS); in main() 37 InitializeEnergyModel(OptS,Node::sequence); in main() 38 …if(OptS->init_structure) Node:: trajectory.push_back(Node::front_structure+" "+Str(Node::Evaluate(… in main()
|
H A D | Node.cpp | 55 OptionS* Node::OptS=NULL; member in Node 113 Node::OptS=OptS; in ProcessOptions() 120 Node::verbose = OptS->verbose; in ProcessOptions() 121 Node::lookahead = OptS->lookahead; in ProcessOptions() 125 Node::windowsize=OptS->windowsize; in ProcessOptions() 128 Node::transcribed=OptS->transcribed; in ProcessOptions() 135 if(OptS->init_structure) { in ProcessOptions() 287 if(OptS->barrier_heuristic=='M') in CalculateFoldingPath() 331 OptS->barrier_heuristic='M'; in CalculatePathAndSaddle() 336 OptS->barrier_heuristic='S'; in CalculatePathAndSaddle() [all …]
|
H A D | Energy.cpp | 83 InitializeEnergyModel(OptionS* OptS, std::string sequence) in InitializeEnergyModel() argument 86 InitializeViennaRNA(sequence,OptS->dangle,OptS->transcribed); in InitializeEnergyModel()
|
H A D | Node.h | 76 static OptionS* OptS; variable 132 static void ProcessOptions(OptionS* OptS);
|
H A D | Energy.h | 32 InitializeEnergyModel(OptionS* OptS, std::string sequence);
|
H A D | MorganHiggs.cpp | 2161 OptionS* OptS; in main() local 2162 OptS = decodeCML(argc, argv); in main() 2172 OptS->transcribed=src.size(); in main() 2173 InitializeEnergyModel(OptS,sequence); in main() 2182 if(OptS->barrier_heuristic=='M'){ in main() 2183 path=MorganHiggsEnergy(sequence,src,tgt,saddlE,OptS->lookahead,OptS->grouping); in main() 2185 else if(OptS->barrier_heuristic=='S'){ in main() 2186 path=MorganHiggsStudlaEnergy(sequence,src,tgt,saddlE,OptS->lookahead,OptS->grouping); in main()
|
/dports/science/afni/afni-AFNI_21.3.16/src/SUMA/ |
H A D | SUMA_NikoMap.c | 359 char *stmp = NULL, *nameout = NULL, *histnote=NULL, sbuf[500], OptS[]={"DoProp"}; in main() local 368 if (SUMA_iswordin(OptS,"DoProp") == 1) { in main() 423 OffS_out = SUMA_FormNeighbOffset (SO, Opt->r, OptS, NULL, -1.0); in main()
|
/dports/lang/oo2c/oo2c_64-2.1.11/lib/src/XML/ |
H A D | Parser.Mod | 1300 END OptS; 1305 OptS (FALSE) 1314 OptS (TRUE) 1487 OptS (TRUE); CheckChar ("="); OptS (TRUE) 1553 OptS (TRUE); 2321 OptS (TRUE); 2547 OptS (FALSE); 2832 OptS (FALSE); 2861 OptS (FALSE); 3035 OptS (FALSE); [all …]
|
/dports/emulators/ucon64/ucon64-2.2.2-src/src/backup/ |
H A D | fal.c | 1290 int OptS = 0; in fal_main() local 1367 OptS = 1; in fal_main() 1490 if (OptS) in fal_main()
|
/dports/graphics/xfractint/xfractint-20.04p16/common/ |
H A D | comwin.mak | 27 Optsize = $(CC) /I$(HFD) $(OptS) $*.c >> f_errs.txt
|
H A D | common.mak | 29 Optsize = $(CC) /I$(HFD) $(OptS) $*.c >> f_errs.txt
|