P7_BUILDER (reference) in projects: dports

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Searched refs:P7_BUILDER (Results 1 – 25 of 25) sorted by relevance

/dports/biology/infernal/infernal-1.1.3/hmmer/src/
H A D	p7_builder.c	51 P7_BUILDER * 54 P7_BUILDER bld = NULL; in p7_builder_Create() 59 ESL_ALLOC(bld, sizeof(P7_BUILDER)); in p7_builder_Create() 347 p7_builder_Destroy(P7_BUILDER bld) in p7_builder_Destroy() 368 static int validate_msa (P7_BUILDER bld, ESL_MSA msa); 372 static int parameterize (P7_BUILDER bld, P7_HMM hmm); 414 p7_Builder(P7_BUILDER bld, ESL_MSA msa, P7_BG bg, in p7_Builder() 786 validate_msa(P7_BUILDER bld, ESL_MSA msa) in validate_msa() 808 relative_weights(P7_BUILDER bld, ESL_MSA msa) in relative_weights() 939 parameterize(P7_BUILDER bld, P7_HMM *hmm) in parameterize() [all …]
H A D	hmmer.h	1310 } P7_BUILDER; typedef 1319 extern int p7_Handmodelmaker(ESL_MSA msa, P7_BUILDER bld, P7_HMM *ret_hmm, P7_TRA… 1320 extern int p7_Fastmodelmaker(ESL_MSA msa, float symfrac, P7_BUILDER bld, P7_HMM ret_hmm, P7_TRA… 1333 extern int p7_Calibrate(P7_HMM hmm, P7_BUILDER cfg_b, ESL_RANDOMNESS byp_rng, P7_BG byp_bg, P… 1506 extern P7_BUILDER p7_builder_Create(const ESL_GETOPTS go, const ESL_ALPHABET abc); 1507 extern int p7_builder_LoadScoreSystem(P7_BUILDER bld, const char matrix, … 1508 extern int p7_builder_SetScoreSystem (P7_BUILDER bld, const char mxfile, const char env,… 1509 extern void p7_builder_Destroy(P7_BUILDER bld); 1511 extern int p7_Builder (P7_BUILDER bld, ESL_MSA msa, P7_BG bg, P7_HMM opt_hmm, P7_TRACE … 1512 extern int p7_SingleBuilder(P7_BUILDER bld, ESL_SQ sq, P7_BG bg, P7_HMM *opt_hmm, P7_TRACE …
H A D	build.c	`81 p7_Handmodelmaker(ESL_MSA msa, P7_BUILDER bld, P7_HMM ret_hmm, P7_TRACE opt_tr) in p7_Handmodelmaker() 155 p7_Fastmodelmaker(ESL_MSA msa, float symfrac, P7_BUILDER bld, P7_HMM ret_hmm, P7_TRACE **opt_t… in p7_Fastmodelmaker()`
H A D	seqmodel.c	`246 P7_BUILDER *bld = NULL; in utest_normalization()`
H A D	hmmbuild.c	`37 P7_BUILDER bld; 905 P7_BUILDER bld = NULL; in mpi_worker() 1017 P7_BUILDER *bld = NULL; in serial_loop()`
H A D	alimask.c	`27 P7_BUILDER *bld;`
H A D	phmmer.c	`394 …P7_BUILDER bld = NULL; / HMM construction configuration … in serial_master() 881 …P7_BUILDER bld = NULL; / HMM construction configuration … in mpi_master() 1230 …P7_BUILDER bld = NULL; / HMM construction configuration … in mpi_worker()`
H A D	evalues.c	`58 p7_Calibrate(P7_HMM hmm, P7_BUILDER cfg_b, ESL_RANDOMNESS byp_rng, P7_BG byp_bg, P7_PROFILE *… in p7_Calibrate()`
H A D	jackhmmer.c	`440 …P7_BUILDER bld = NULL; / HMM construction configuration … in serial_master() 994 …P7_BUILDER bld = NULL; / HMM construction configuration … in mpi_master() 1376 …P7_BUILDER bld = NULL; / HMM construction configuration … in mpi_worker()`
H A D	hmmdwrkr.c	`554 P7_BUILDER bld = NULL; / HMM construction configuration */ in search_thread()`
H A D	hmmdwrkr_shard.c	`583 P7_BUILDER bld = NULL; / HMM construction configuration */ in search_thread()`
H A D	nhmmer.c	`520 P7_BUILDER *builder = NULL; in serial_master()`
/dports/biology/hmmer/hmmer-3.3/src/
H A D	p7_builder.c	51 P7_BUILDER * 54 P7_BUILDER bld = NULL; in p7_builder_Create() 59 ESL_ALLOC(bld, sizeof(P7_BUILDER)); in p7_builder_Create() 347 p7_builder_Destroy(P7_BUILDER bld) in p7_builder_Destroy() 368 static int validate_msa (P7_BUILDER bld, ESL_MSA msa); 372 static int parameterize (P7_BUILDER bld, P7_HMM hmm); 414 p7_Builder(P7_BUILDER bld, ESL_MSA msa, P7_BG bg, in p7_Builder() 786 validate_msa(P7_BUILDER bld, ESL_MSA msa) in validate_msa() 808 relative_weights(P7_BUILDER bld, ESL_MSA msa) in relative_weights() 939 parameterize(P7_BUILDER bld, P7_HMM *hmm) in parameterize() [all …]
H A D	hmmer.h	1310 } P7_BUILDER; typedef 1319 extern int p7_Handmodelmaker(ESL_MSA msa, P7_BUILDER bld, P7_HMM *ret_hmm, P7_TRA… 1320 extern int p7_Fastmodelmaker(ESL_MSA msa, float symfrac, P7_BUILDER bld, P7_HMM ret_hmm, P7_TRA… 1333 extern int p7_Calibrate(P7_HMM hmm, P7_BUILDER cfg_b, ESL_RANDOMNESS byp_rng, P7_BG byp_bg, P… 1506 extern P7_BUILDER p7_builder_Create(const ESL_GETOPTS go, const ESL_ALPHABET abc); 1507 extern int p7_builder_LoadScoreSystem(P7_BUILDER bld, const char matrix, … 1508 extern int p7_builder_SetScoreSystem (P7_BUILDER bld, const char mxfile, const char env,… 1509 extern void p7_builder_Destroy(P7_BUILDER bld); 1511 extern int p7_Builder (P7_BUILDER bld, ESL_MSA msa, P7_BG bg, P7_HMM opt_hmm, P7_TRACE … 1512 extern int p7_SingleBuilder(P7_BUILDER bld, ESL_SQ sq, P7_BG bg, P7_HMM *opt_hmm, P7_TRACE …
H A D	build.c	`81 p7_Handmodelmaker(ESL_MSA msa, P7_BUILDER bld, P7_HMM ret_hmm, P7_TRACE opt_tr) in p7_Handmodelmaker() 155 p7_Fastmodelmaker(ESL_MSA msa, float symfrac, P7_BUILDER bld, P7_HMM ret_hmm, P7_TRACE **opt_t… in p7_Fastmodelmaker()`
H A D	seqmodel.c	`246 P7_BUILDER *bld = NULL; in utest_normalization()`
H A D	hmmbuild.c	`37 P7_BUILDER bld; 905 P7_BUILDER bld = NULL; in mpi_worker() 1017 P7_BUILDER *bld = NULL; in serial_loop()`
H A D	alimask.c	`27 P7_BUILDER *bld;`
H A D	phmmer.c	`394 …P7_BUILDER bld = NULL; / HMM construction configuration … in serial_master() 881 …P7_BUILDER bld = NULL; / HMM construction configuration … in mpi_master() 1230 …P7_BUILDER bld = NULL; / HMM construction configuration … in mpi_worker()`
H A D	evalues.c	`58 p7_Calibrate(P7_HMM hmm, P7_BUILDER cfg_b, ESL_RANDOMNESS byp_rng, P7_BG byp_bg, P7_PROFILE *… in p7_Calibrate()`
H A D	jackhmmer.c	`440 …P7_BUILDER bld = NULL; / HMM construction configuration … in serial_master() 994 …P7_BUILDER bld = NULL; / HMM construction configuration … in mpi_master() 1376 …P7_BUILDER bld = NULL; / HMM construction configuration … in mpi_worker()`
H A D	hmmdwrkr.c	`554 P7_BUILDER bld = NULL; / HMM construction configuration */ in search_thread()`
H A D	hmmdwrkr_shard.c	`583 P7_BUILDER bld = NULL; / HMM construction configuration */ in search_thread()`
H A D	nhmmer.c	`520 P7_BUILDER *builder = NULL; in serial_master()`
/dports/biology/infernal/infernal-1.1.3/src/
H A D	cmbuild.c	`207 P7_BUILDER fp7_bld; / the P7_BUILDER */`