Searched refs:PairedPatternSource (Results 1 – 4 of 4) sorted by relevance
279 class PairedPatternSource {282 virtual ~PairedPatternSource() { } in ~PairedPatternSource()319 static PairedPatternSource* setupPatternSources(344 class PairedSoloPatternSource : public PairedPatternSource {351 PairedPatternSource(p), in PairedSoloPatternSource()419 class PairedDualPatternSource : public PairedPatternSource {427 PairedPatternSource(p), cur_(0), srca_(srca), srcb_(srcb) in PairedDualPatternSource()592 WrappedPatternSourcePerThread(PairedPatternSource& __patsrc) : in WrappedPatternSourcePerThread()611 PairedPatternSource& patsrc_;619 WrappedPatternSourcePerThreadFactory(PairedPatternSource& patsrc) : in WrappedPatternSourcePerThreadFactory()[all …]
329 PairedPatternSource* PairedPatternSource::setupPatternSources(438 PairedPatternSource *patsrc = NULL;
1663 createPatsrcFactory(PairedPatternSource& _patsrc, int tid) { in createPatsrcFactory()1674 static PairedPatternSource* multiseed_patsrc;2818 PairedPatternSource& patsrc = *multiseed_patsrc; in multiseedSearchWorker_hisat_bp()3318 PairedPatternSource& patsrc, // pattern source in multiseedSearch()3433 PairedPatternSource *patsrc = PairedPatternSource::setupPatternSources( in driver()
1994 createPatsrcFactory(PairedPatternSource& _patsrc, int tid) { in createPatsrcFactory()2005 static PairedPatternSource* multiseed_patsrc;3152 PairedPatternSource& patsrc = *multiseed_patsrc; in multiseedSearchWorker_hisat2()3658 PairedPatternSource& patsrc, // pattern source in multiseedSearch()3744 PairedPatternSource *patsrc = PairedPatternSource::setupPatternSources( in driver()