Searched refs:PartitionModelPlen (Results 1 – 4 of 4) sorted by relevance
| /dports/biology/iqtree/IQ-TREE-2.0.6/model/ |
| H A D | partitionmodelplen.cpp | 22 PartitionModelPlen::PartitionModelPlen() in PartitionModelPlen() function in PartitionModelPlen
28 PartitionModelPlen::PartitionModelPlen(Params ¶ms, PhyloSuperTreePlen *tree, ModelsBlock *model… in PartitionModelPlen() function in PartitionModelPlen
34 PartitionModelPlen::~PartitionModelPlen() in ~PartitionModelPlen()
38 void PartitionModelPlen::startCheckpoint() { in startCheckpoint()
42 void PartitionModelPlen::saveCheckpoint() { in saveCheckpoint()
57 void PartitionModelPlen::restoreCheckpoint() { in restoreCheckpoint()
75 double PartitionModelPlen::optimizeParameters(int fixed_len, bool write_info, double logl_epsilon, … in optimizeParameters()
196 double PartitionModelPlen::optimizeParametersGammaInvar(int fixed_len, bool write_info, double logl… in optimizeParametersGammaInvar()
201 void PartitionModelPlen::writeInfo(ostream &out) { in writeInfo()
213 double PartitionModelPlen::optimizeGeneRate(double gradient_epsilon) in optimizeGeneRate()
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| H A D | partitionmodelplen.h | 15 class PartitionModelPlen : public PartitionModel
18 PartitionModelPlen();
27 PartitionModelPlen(Params ¶ms, PhyloSuperTreePlen *tree, ModelsBlock *models_block);
29 ~PartitionModelPlen();
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| H A D | modelmarkov.h | 49 friend class PartitionModelPlen; variable
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| /dports/biology/iqtree/IQ-TREE-2.0.6/tree/ |
| H A D | iqtree.cpp | 950 … setModelFactory(new PartitionModelPlen(params, (PhyloSuperTreePlen*) this, models_block)); in initializeModel()
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