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Searched refs:Pkmid (Results 1 – 8 of 8) sorted by relevance

/dports/biology/pbbam/pbbam-0.18.0/include/pbbam/internal/
H A DBamRecordView.inl57 inline std::vector<float> BamRecordView::Pkmid() const function in PacBio::BAM::BamRecordView
58 { return record_.Pkmid(orientation_, aligned_, exciseSoftClips_, pulseBehavior_); }
/dports/biology/pbbam/pbbam-0.18.0/include/pbbam/
H A DBamRecordView.h81 std::vector<float> Pkmid() const;
H A DBamRecord.h591 std::vector<float> Pkmid(Orientation orientation = Orientation::NATIVE, bool aligned = false,
963 BamRecord& Pkmid(const std::vector<float>& photons);
970 BamRecord& Pkmid(const std::vector<uint16_t>& encodedPhotons);
/dports/biology/pbbam/pbbam-0.18.0/tests/src/
H A Dtest_WhitelistedZmwReadStitcher.cpp73 EXPECT_EQ(b1.Pkmid(), b2.Pkmid()); in Compare()
H A Dtest_ZmwReadStitcher.cpp74 EXPECT_EQ(b1.Pkmid(), b2.Pkmid()); in Compare()
/dports/biology/pbbam/pbbam-0.18.0/src/
H A DVirtualZmwBamRecord.cpp136 if (b.HasPkmid()) MoveAppend(b.Pkmid(), pm); in StitchSources()
227 if (!pm.empty()) this->Pkmid(pm); in StitchSources()
H A DBamRecord.cpp628 internal::ClipPulse(Pkmid(Orientation::NATIVE), p2bCache, clipFrom, clipLength)); in ClipTags()
1668 std::vector<float> BamRecord::Pkmid(Orientation orientation, bool aligned, bool exciseSoftClips, in Pkmid() function in PacBio::BAM::BamRecord
1674 BamRecord& BamRecord::Pkmid(const std::vector<float>& photons) in Pkmid() function in PacBio::BAM::BamRecord
1676 Pkmid(EncodePhotons(photons)); in Pkmid()
1680 BamRecord& BamRecord::Pkmid(const std::vector<uint16_t>& encodedPhotons) in Pkmid() function in PacBio::BAM::BamRecord
/dports/biology/pbbam/pbbam-0.18.0/
H A DCHANGELOG.md252 - Added BamRecord::Pkmean2 & Pkmid2, 2D equivalent of Pkmean/Pkmid, for internal
451 - Pkmid()