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Searched refs:PopcountBitRange (Results 1 – 14 of 14) sorted by relevance

/dports/biology/plink/plink-ng-79b2df8c/2.0/
H A Dplink2_pvar.cc750 *exclude_ct_ptr += PopcountBitRange(variant_include, orig_x_start, par1_end); in SplitPar()
760 *exclude_ct_ptr += PopcountBitRange(variant_include, par1_end, par2_start); in SplitPar()
765 *exclude_ct_ptr += PopcountBitRange(variant_include, par2_start, orig_x_end); in SplitPar()
H A Dplink2_glm.cc3444 …literal_covar_ct = PopcountBitRange(cur_parameter_subset, 2 + domdev_present, 2 + domdev_present +… in GlmLogisticThread()
4927 … cur_variant_bidx_end = variant_bidx + PopcountBitRange(variant_include, variant_uidx1, chr_end); in ReadLocalCovarBlock()
5175 const uint32_t row_ct = PopcountBitRange(variant_include, variant_uidx, next_variant_uidx); in ReadRfmix2Block()
5210 row_ct = PopcountBitRange(variant_include, variant_uidx, local_chr_start_vidx); in ReadRfmix2Block()
5255 row_ct = PopcountBitRange(variant_include, variant_uidx, variant_uidx_chr_end); in ReadRfmix2Block()
5321 local_skip_chr = !PopcountBitRange(variant_include, chr_start_vidx, chr_end_vidx); in ReadRfmix2Block()
6568 …literal_covar_ct = PopcountBitRange(cur_parameter_subset, 2 + domdev_present, 2 + domdev_present +… in GlmLinearThread()
11807 … const uint32_t variant_ct_before_x = PopcountBitRange(early_variant_include, 0, x_start); in GlmMain()
11817 … const uint32_t variant_ct_before_y = PopcountBitRange(early_variant_include, 0, y_start); in GlmMain()
12405 … const uint32_t variant_ct_before_x = PopcountBitRange(early_variant_include, 0, x_start); in GlmMain()
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H A Dplink2_filter.cc104 …const uint32_t new_variant_ct = PopcountBitRange(variant_include, variant_uidx_start, variant_uidx… in FromToFlag()
3691 …prefilter_variant_ct -= PopcountBitRange(variant_include, x_start, cip->chr_fo_vidx_start[x_chr_fo…
3988 …relevant_variant_ct -= PopcountBitRange(variant_include, cip->chr_fo_vidx_start[chr_fo_idx], cip->… in EnforceImpR2Thresh()
3993 …relevant_variant_ct -= PopcountBitRange(variant_include, cip->chr_fo_vidx_start[chr_fo_idx], cip->… in EnforceImpR2Thresh()
H A Dplink2_common.h869 return PopcountBitRange(variant_include, min_idx, max_idx); in CountChrVariantsUnsafe()
H A Dplink2_common.cc2299 variant_idx += PopcountBitRange(variant_include, variant_uidx, chr_end_variant_uidx); in FillSubsetChrFoVidxStart()
2747 uint32_t cur_variant_ct = PopcountBitRange(variant_include, variant_uidx, variant_uidx_end); in GetMaxAltAlleleBlockSize()
H A Dplink2_cmdline.h1417 uintptr_t PopcountBitRange(const uintptr_t* bitvec, uintptr_t start_idx, uintptr_t end_idx);
H A Dplink2_cmdline.cc1784 uintptr_t PopcountBitRange(const uintptr_t* bitvec, uintptr_t start_idx, uintptr_t end_idx) { in PopcountBitRange() function
2088 …const uint32_t variant_ct = PopcountBitRange(variant_include, variant_uidx_start, variant_uidx_end… in CountExtraAlleles()
H A Dplink2_ld.cc1219 … const uint32_t chr_variant_ct = PopcountBitRange(variant_include, initial_variant_uidx, chr_end); in LdPruneSubcontigSplitAll()
1282 … const uint32_t chr_variant_ct = PopcountBitRange(variant_include, first_variant_uidx, chr_end); in LdPruneSubcontigSplitAll()
H A Dplink2_data.cc2770 cur_allele_ct = PopcountBitRange(allele_presents, old_offset_start, old_offset_end);
7938 chr_idx_to_size[chr_idx] = PopcountBitRange(variant_include, vidx_start, vidx_end);
H A Dplink2_matrix_calc.cc3734 prev_missing_nz_ct = PopcountBitRange(missing_nz, 0, row_start_idx); in CalcDblMissingThread()
7287 variant_ct -= PopcountBitRange(variant_include, x_start, x_end); in Vscore()
H A Dplink2.cc546 variant_ct_y = PopcountBitRange(variant_include, y_start, y_end); in ReportGenotypingRate()
628 *variant_ct_ptr = PopcountBitRange(variant_include, variant_uidx_start, variant_uidx_end); in ApplyVariantBpFilters()
H A Dplink2_misc.cc4936 …variant_skip_ct += PopcountBitRange(variant_include, cip->chr_fo_vidx_start[chr_fo_idx], cip->chr_…
H A Dplink2_export.cc1245 …if (unlikely((chr_end != raw_variant_ct) && (PopcountBitRange(variant_include, variant_uidx_start,…
H A Dplink2_import.cc11822 …uint32_t chr_filter_present = (PopcountBitRange(cip->chr_mask, 0, autosome_ct_p1) != autosome_ct_p… in OxBgenToPgen()